Roseburia porci (DSM 107448, MUC/MUC-530-WT-4D, JCM 34376)

Name: Roseburia porci (DSM 107448, MUC/MUC-530-WT-4D, JCM 34376)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159630

Type strain

Strain Designation MUC/MUC-530-WT-4D

Culture col. no. DSM 107448 MUC/MUC-530-WT-4D JCM 34376

NCBI tax ID(s) 2605790

Special Collections DSMZ JCM Pig DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; JCM <-- B. Abt; DSMZ, Germany; DSM 107448 (=MUC/MUC-530-WT-4D) <-- T. Clavel; RWTH Aachen, Germany.

Links

Roseburia porci MUC/MUC-530-WT-4D is a bacterium that was isolated from pig, WT. 37 weeks old, feces.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403531

JCM 34376,DSM 107448

@ref 20215

Last LPSN update 2026-05-29 08:44:14

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Roseburia

Species Roseburia porci

Full scientific name Roseburia porci Wylensek et al. 2021

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66466	BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c)		Medium recipe at MediaDive	Name: BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c) Composition: Brain heart infusion 37.0 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66466	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	93.925
125439	facultative anaerobe	96.74

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	+		from API rID32A
68380	histidine arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
66466	-	-	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66466	pig, WT. 37 weeks old, feces	Kranzberg (Bavaria)	Germany	DEU	Europe
67770	Feces of a German Landrace pig (minipig breed)	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537536 (>99% sequence identity) for Roseburia porci subclade from Microbeatlas

Aquatic Samples	59
Soil Samples	73
Animal Samples	5447
Plant Samples	35
Total Samples	5614

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969576v1 assembly for Roseburia porci MUC/MUC-530-WT-4D	contig	GCA_009695765	2605790.3	2896066257	2605790	57.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66466	Roseburia porci strain MUC/MUC-530-WT-4D 16S ribosomal RNA gene, partial sequence	MN537536	1432		2652284

GC content

@ref	GC-content (mol%)	Method
67770	41.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM969576v1 assembly for Roseburia porci MUC/MUC-530-WT-4D
BV-BRC: 2605790.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.74	no
125439	motility	BacteriaNetⓘ	yes	81.79	no
125439	gram_stain	BacteriaNetⓘ	variable	65.13	no
125439	spore_formation	BacteriaNetⓘ	yes	70.81	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Roseburia sp. MUC/MUC-530-WT-4D
PATRIC: 2605790.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	73.71	no
125438	anaerobic	anaerobicⓘ	yes	93.93	no
125438	spore-forming	spore-formingⓘ	yes	52.96	no
125438	aerobic	aerobicⓘ	no	95.54	no
125438	thermophilic	thermophileⓘ	no	91.65	yes
125438	flagellated	motile2+ⓘ	yes	77.26	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66466	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107448
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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