Name: Herbidospora galbida NEAU-GS14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159631

Type strain:

Species: Herbidospora galbida

Strain Designation: NEAU-GS14

Culture col. no.: DSM 109827, CCTCC AA 2018040, JCM 33459

Strain history: J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-GS14.

NCBI tax ID(s): 2575442 (species)

SI-ID 406951

DSM 109827

Section

Herbidospora galbida NEAU-GS14 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Herbidospora*
	Species	**Herbidospora galbida**
	Full Scientific Name (LPSN)	Herbidospora galbida Han et al. 2020

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #66467]

Caption:

Medium 65 28°C

[Ref.: #66467]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66467]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #66467]

Culture medium growth

[Ref.: #66467]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #66467]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #66467]

Culture medium growth

[Ref.: #66467]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66467]

Culture medium composition

expand / minimize

[Ref.: #66467]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #66467]

Culture medium growth

[Ref.: #66467]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66467]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66467]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #66467]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66467]	Sample type/isolated from	soil
[Ref.: #66467]	Geographic location (country and/or sea, region)	Hainan province, Sanya city (18° 15' 26.6'' N, 109° 31' 54.7'' E)
[Ref.: #66467]	Country	China
[Ref.: #66467]	Country ISO 3 Code	CHN
[Ref.: #66467]	Continent	Asia
[Ref.: #66467]	Geographic location	18.2574°/109.5320°

[Ref.: #67770]	Sample type/isolated from	Soil of a flower bed in a residential area in Sanya
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MH782158 (>99% sequence identity) for Herbidospora from Microbeatlas

Aquatic Samples	8
Soil Samples	294
Animal Samples	18
Plant Samples	30
Total Samples	350

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66467]	Herbidospora sp. strain NEAU-GS14 16S ribosomal RNA gene, partial sequence	MH782158	1512	ENA	2575442 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbidospora galbida NEAU-GS14	GCA_005233835	contig	GenBank	2575442 tax ID
[Ref.: #66792]	Herbidospora galbida NEAU-GS14	2890725172	draft	JGI IMG/M	2575442 tax ID	*

[Ref.: #66467]	GC-content	70.6 mol%	sequence analysis
[Ref.: #67770]	GC-content	70.6 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #66467]

Culture collection no.

DSM 109827, CCTCC AA 2018040, JCM 33459

[Ref.: #112105]

SI-ID 406951

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Herbidospora solisilvae sp. nov., a novel cellulose-degrading actinobacterium isolated from forest soil.	Yu M, Zhou R, Li J, Han L, Wang H, Zhang S, Zhao J, Wang X, Song J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-021-01542-6	2021	*
Phylogeny	Herbidospora galbida sp. nov., a novel actinobacterium isolated from soil.	Han L, Yu M, Zhao J, Jiang H, Guo X, Shen G, Shen Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003922	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66467

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109827

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#112105

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406951.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Herbidospora galbida in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF