Herbidospora galbida (DSM 109827, CCTCC AA 2018040, JCM 33459)

Name: Herbidospora galbida (DSM 109827, CCTCC AA 2018040, JCM 33459)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159631

Type strain

Strain Designation NEAU-GS14

Culture col. no. DSM 109827 CCTCC AA 2018040 JCM 33459 NEAU-GS14

NCBI tax ID(s) 2575442

Special Collections DSMZ JCM

Links

Herbidospora galbida NEAU-GS14 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406951

JCM 33459,DSM 109827

@ref 20215

Last LPSN update 2025-12-16 10:08:18

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Herbidospora

Species Herbidospora galbida

Full scientific name Herbidospora galbida Han et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.4

Multimedia

@ref:	66467
multimedia content:	DSM_109827.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_109827.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
66467	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
66467	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
66467	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66467	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.7

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₆)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66467	soil	Hainan province, Sanya city (18° 15' 26.6'' N, 109° 31' 54.7'' E)	China	CHN	Asia	18.2574	109.532 18.2574/109.532
67770	Soil of a flower bed in a residential area in Sanya	Hainan Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence MH782158 (>99% sequence identity) for Herbidospora from Microbeatlas

Aquatic Samples	8
Soil Samples	294
Animal Samples	18
Plant Samples	30
Total Samples	350

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM523383v1 assembly for Herbidospora galbida NEAU-GS14	contig	GCA_005233835	2575442.3	2890725172	2575442	46.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66467	Herbidospora galbida strain NEAU-GS14 16S ribosomal RNA gene, partial sequence	MH782158	1512		2575442

GC content

@ref	GC-content (mol%)	Method
66467	70.6	sequence analysis
67770	70.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Herbidospora galbida NEAU-GS14
NCBI: GCA_005233835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	61.50	no
125439	motility	BacteriaNetⓘ	no	82.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Herbidospora solisilvae sp. nov., a novel cellulose-degrading actinobacterium isolated from forest soil.	Yu M, Zhou R, Li J, Han L, Wang H, Zhang S, Zhao J, Wang X, Song J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-021-01542-6	2021
Phylogeny	Herbidospora galbida sp. nov., a novel actinobacterium isolated from soil.	Han L, Yu M, Zhao J, Jiang H, Guo X, Shen G, Shen Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003922	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66467	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109827
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Herbidospora galbida (DSM 109827, CCTCC AA 2018040, JCM 33459)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_005233835

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media