Name: Herbidospora galbida NEAU-GS14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159631

Type strain:

Species: Herbidospora galbida

Strain Designation: NEAU-GS14

Culture col. no.: DSM 109827, CCTCC AA 2018040, JCM 33459

Strain history: J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-GS14.

NCBI tax ID(s): 2575442 (species)

SI-ID 406951

DSM 109827

Special Collections

DSMZ
JCM

Section

Herbidospora galbida NEAU-GS14 is a bacterium that was isolated from soil.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Herbidospora*
	Species	**Herbidospora galbida**
	Full Scientific Name (LPSN)	Herbidospora galbida Han et al. 2020

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66467]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

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Observation

quinones: MK-10(H₄), MK-10(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66467]	Sample type/isolated from	soil
[Ref.: #66467]	Geographic location (country and/or sea, region)	Hainan province, Sanya city (18° 15' 26.6'' N, 109° 31' 54.7'' E)
[Ref.: #66467]	Country	China
[Ref.: #66467]	Country ISO 3 Code	CHN
[Ref.: #66467]	Continent	Asia
[Ref.: #66467]	Geographic location	18.2574°/109.5320°

[Ref.: #67770]	Sample type/isolated from	Soil of a flower bed in a residential area in Sanya
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence MH782158 (>99% sequence identity) for Herbidospora from Microbeatlas

Aquatic Samples	8
Soil Samples	294
Animal Samples	18
Plant Samples	30
Total Samples	350

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66467]	Herbidospora galbida strain NEAU-GS14 16S ribosomal RNA gene, partial sequence	MH782158	1512	GenBank ENA	2575442 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbidospora galbida NEAU-GS14	GCA_005233835	contig	GenBank ENA	2575442 tax ID
[Ref.: #66792]	Herbidospora galbida NEAU-GS14	2890725172	draft	JGI IMG/M	2575442 tax ID	*

[Ref.: #66467]	GC-content	70.6 mol%	sequence analysis
[Ref.: #67770]	GC-content	70.6 mol%	genome sequence analysis

Availability in culture collections External links

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Culture collection no.

DSM 109827, CCTCC AA 2018040, JCM 33459

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SI-ID 406951

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Herbidospora solisilvae sp. nov., a novel cellulose-degrading actinobacterium isolated from forest soil.	Yu M, Zhou R, Li J, Han L, Wang H, Zhang S, Zhao J, Wang X, Song J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-021-01542-6	2021	*
Phylogeny	Herbidospora galbida sp. nov., a novel actinobacterium isolated from soil.	Han L, Yu M, Zhao J, Jiang H, Guo X, Shen G, Shen Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003922	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

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Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109827

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#112105

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406951.1 )

* These data were automatically processed and therefore are not curated

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