Strain identifier

BacDive ID: 159631

Type strain: Yes

Species: Herbidospora galbida

Strain Designation: NEAU-GS14

Strain history: J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-GS14.

NCBI tax ID(s): 2575442 (species)

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General

@ref: 66467

BacDive-ID: 159631

DSM-Number: 109827

keywords: genome sequence, 16S sequence, Bacteria

description: Herbidospora galbida NEAU-GS14 is a bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 2575442
  • Matching level: species

strain history

@refhistory
66467<- J. Zhao, School of Life Science, Northeast Agricultural University; NEAU-GS14 <- L. Han, School of Life Science, Northeast Agricultural University; NEAU-GS14
67770J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-GS14.

doi: 10.13145/bacdive159631.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Herbidospora
  • species: Herbidospora galbida
  • full scientific name: Herbidospora galbida Han et al. 2020

@ref: 66467

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Streptosporangiaceae

genus: Herbidospora

species: Herbidospora galbida

full scientific name: Herbidospora galbida Han et al. 2019

strain designation: NEAU-GS14

type strain: yes

Morphology

multimedia

  • @ref: 66467
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_109827.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66467ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
66467GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
66467GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
66467positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-10(H4), MK-10(H6)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
66467soilHainan province, Sanya city (18° 15' 26.6'' N, 109° 31' 54.7'' E)ChinaCHNAsia18.2574109.532
67770Soil of a flower bed in a residential area in SanyaHainan ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1812.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_910;97_1196;98_1432;99_1812&stattab=map
  • Last taxonomy: Herbidospora
  • 16S sequence: MH782158
  • Sequence Identity:
  • Total samples: 350
  • soil counts: 294
  • aquatic counts: 8
  • animal counts: 18
  • plant counts: 30

Sequence information

16S sequences

  • @ref: 66467
  • description: Herbidospora galbida strain NEAU-GS14 16S ribosomal RNA gene, partial sequence
  • accession: MH782158
  • length: 1512
  • database: nuccore
  • NCBI tax ID: 2575442

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Herbidospora galbida NEAU-GS142890725172draftimg2575442
67770Herbidospora galbida NEAU-GS14GCA_005233835contigncbi2575442

GC content

@refGC-contentmethod
6646770.6sequence analysis
6777070.6genome sequence analysis

External links

@ref: 66467

culture collection no.: DSM 109827, CCTCC AA 2018040, JCM 33459

straininfo link

  • @ref: 112105
  • straininfo: 406951

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny31829915Herbidospora galbida sp. nov., a novel actinobacterium isolated from soil.Han L, Yu M, Zhao J, Jiang H, Guo X, Shen G, Shen Y, Wang X, Xiang WInt J Syst Evol Microbiol10.1099/ijsem.0.0039222020Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryTranscriptome
Phylogeny33649883Herbidospora solisilvae sp. nov., a novel cellulose-degrading actinobacterium isolated from forest soil.Yu M, Zhou R, Li J, Han L, Wang H, Zhang S, Zhao J, Wang X, Song J, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-021-01542-62021Actinobacteria, Bacterial Typing Techniques, *Cellulose, DNA, Bacterial/genetics, Fatty Acids, Forests, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, Soil Microbiology, Vitamin K 2Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66467Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-109827Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109827)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
112105Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406951.1