Strain identifier

BacDive ID: 159630

Type strain: Yes

Species: Roseburia porci

Strain Designation: MUC/MUC-530-WT-4D

Strain history: B. Abt; DSMZ, Germany; DSM 107448 (=MUC/MUC-530-WT-4D) <-- T. Clavel; RWTH Aachen, Germany.

NCBI tax ID(s): 2605790 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 9.1 (current version)

General

@ref: 66466

BacDive-ID: 159630

DSM-Number: 107448

keywords: genome sequence, 16S sequence, Bacteria, anaerobe

description: Roseburia porci MUC/MUC-530-WT-4D is an anaerobe bacterium that was isolated from pig, WT. 37 weeks old, feces.

NCBI tax id

  • NCBI tax id: 2605790
  • Matching level: species

strain history

@refhistory
66466<- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
67770B. Abt; DSMZ, Germany; DSM 107448 (=MUC/MUC-530-WT-4D) <-- T. Clavel; RWTH Aachen, Germany.

doi: 10.13145/bacdive159630.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Roseburia
  • species: Roseburia porci
  • full scientific name: Roseburia porci Wylensek et al. 2021

@ref: 66466

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Lachnospiraceae

genus: Roseburia

species: Roseburia porci

full scientific name: Roseburia porci

strain designation: MUC/MUC-530-WT-4D

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 66466
  • name: BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/215c
  • composition: Name: BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c) Composition: Brain heart infusion 37.0 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l Distilled water

culture temp

@refgrowthtypetemperature
66466positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 93.925

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
66466--++-++----------+-+-----++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
66466pig, WT. 37 weeks old, fecesKranzberg (Bavaria)GermanyDEUEurope
67770Feces of a German Landrace pig (minipig breed)FreisingGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_24364.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_10438;97_12619;98_18327;99_24364&stattab=map
  • Last taxonomy: Roseburia porci subclade
  • 16S sequence: MN537536
  • Sequence Identity:
  • Total samples: 5614
  • soil counts: 73
  • aquatic counts: 59
  • animal counts: 5447
  • plant counts: 35

Sequence information

16S sequences

  • @ref: 66466
  • description: Roseburia porci strain MUC/MUC-530-WT-4D 16S ribosomal RNA gene, partial sequence
  • accession: MN537536
  • length: 1432
  • database: nuccore
  • NCBI tax ID: 2652284

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Roseburia porci MUC/MUC-530-WT-4DGCA_009695765contigncbi2605790
66792Roseburia sp. MUC/MUC-530-WT-4D2605790.3wgspatric2605790

GC content

  • @ref: 67770
  • GC-content: 41.7
  • method: genome sequence analysis

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno79no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes73.712no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes93.925no
69480spore-formingspore-formingAbility to form endo- or exosporesyes52.955no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no95.538no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno91.653yes
69480flagellatedmotile2+Ability to perform flagellated movementyes77.26no

External links

@ref: 66466

culture collection no.: DSM 107448, JCM 34376

straininfo link

  • @ref: 112104
  • straininfo: 403531

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66466Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107448Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107448)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112104Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403531.1