Name: Streptomyces noboritoensis IPCR 97
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15427

Type strain:

Species: Streptomyces noboritoensis

Strain Designation: IPCR 97

Culture col. no.: DSM 40223, ATCC 25477, CBS 887.69, IFO 13065, ISP 5223, JCM 4065, JCM 4557, NBRC 13065, NRRL B-12152, RIA 1257, BCRC 11553, CGMCC 4.1457, KCTC 9060, LMG 19337, NBIMCC 1862, VKM Ac-1012

Strain history: KCC S-0065 <-- S. Suzuki 97.

NCBI tax ID(s): 67337 (species)

SI-ID 13348

LMG 19337, ATCC 25477, CCRC 11553, DSM 40223, IFO 13065, JCM 4065, JCM 4557, NRRL B-12152, VKM Ac-1012, AS 4.1457, IMET 43914, KCTC 9060, NBRC 13065, BCRC 11553, NBIMCC 1862, CGMCC 4.1457, CBS 887.69

Other strains from Streptomyces noboritoensis

S. noboritoensis KITA V-1179, DSM 40192, ATCC 23937, ...

Section

Streptomyces noboritoensis IPCR 97 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces noboritoensis**
	Full Scientific Name (LPSN)	Streptomyces noboritoensis Isono et al. 1957 (Approved Lists 1980)

Synonym

Streptomyces melanogenes

Information on morphological and physiological properties Morphology

[Ref.: #19426]	Colony color	Brown/Red
[Ref.: #19426]	Incubation period	10-14 days
[Ref.: #19426]	Cultivation medium used	ISP 2

[Ref.: #19426]	Colony color	Brown/Red
[Ref.: #19426]	Incubation period	10-14 days
[Ref.: #19426]	Cultivation medium used	ISP 3

[Ref.: #19426]	Colony color	Brown/Red
[Ref.: #19426]	Incubation period	10-14 days
[Ref.: #19426]	Cultivation medium used	ISP 4

[Ref.: #19426]	Colony color	Brown
[Ref.: #19426]	Incubation period	10-14 days
[Ref.: #19426]	Cultivation medium used	ISP 5

[Ref.: #19426]	Colony color	Brown
[Ref.: #19426]	Incubation period	10-14 days
[Ref.: #19426]	Cultivation medium used	ISP 6

[Ref.: #19426]	Colony color	Brown
[Ref.: #19426]	Incubation period	10-14 days
[Ref.: #19426]	Cultivation medium used	ISP 7

[Ref.: #19426]	Multicellular complex forming ability	yes
[Ref.: #19426]	Multicellular complex name	Aerial Mycelium
[Ref.: #19426]	Multicellular complex color	White
[Ref.: #19426]	Medium Name (multicellularity)	ISP 2

[Ref.: #19426]	Multicellular complex forming ability	yes
[Ref.: #19426]	Multicellular complex name	Aerial Mycelium
[Ref.: #19426]	Multicellular complex color	White
[Ref.: #19426]	Medium Name (multicellularity)	ISP 3

[Ref.: #19426]	Multicellular complex forming ability	yes
[Ref.: #19426]	Multicellular complex name	Aerial Mycelium
[Ref.: #19426]	Multicellular complex color	White
[Ref.: #19426]	Medium Name (multicellularity)	ISP 4

[Ref.: #19426]	Multicellular complex forming ability	yes
[Ref.: #19426]	Multicellular complex name	Aerial Mycelium
[Ref.: #19426]	Multicellular complex color	White
[Ref.: #19426]	Medium Name (multicellularity)	ISP 5

[Ref.: #19426]	Multicellular complex forming ability	yes
[Ref.: #19426]	Multicellular complex name	Aerial Mycelium
[Ref.: #19426]	Multicellular complex color	White
[Ref.: #19426]	Medium Name (multicellularity)	ISP 6

[Ref.: #19426]	Multicellular complex forming ability	yes
[Ref.: #19426]	Multicellular complex name	Aerial Mycelium
[Ref.: #19426]	Multicellular complex color	White
[Ref.: #19426]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9280]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9280]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9280]

Culture medium composition

expand / minimize

[Ref.: #19426]

Culture medium

ISP 2

[Ref.: #19426]

Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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[Ref.: #19426]

Culture medium

ISP 6

[Ref.: #19426]

Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #19426]

Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9280]	growth	28 °C
[Ref.: #19426]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9280]	Temperature range	mesophilic
[Ref.: #19426]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19426]	Spore description	Formation of spore chains: rectiflixibilis, spore surface: smooth
[Ref.: #19426]	Ability of spore formation	yes

[Ref.: #9280]	Name of produced compound	blastomycin
[Ref.: #9280]	Name of produced compound	hygromycin
[Ref.: #20216]	Name of produced compound	Hygromycin
[Ref.: #20216]	Name of produced compound	Totomycin (Homomycin)
[Ref.: #20216]	Name of produced compound	Blastomycin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19426]		NaCl		maximum	2.5	%

[Ref.: #19426]	Name of tolerated compound	Lysozyme
[Ref.: #19426]	Tolerance percentage	0.1

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #67770]	hygromycin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19426]	290	+	+	+	+	+	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9280]	Sample type/isolated from	soil
[Ref.: #9280]	Geographic location (country and/or sea, region)	Kanagawa Prefecture, Kawasaki, Inada-Noborito
[Ref.: #9280]	Country	Japan
[Ref.: #9280]	Country ISO 3 Code	JPN
[Ref.: #9280]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Inada-Noborito, Kawasaki, Kanagawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9280]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19426]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9280]	Streptomyces noboritoensis strain NBRC 13065 16S ribosomal RNA, partial sequence	NR_041107	1477	GenBank	67337 tax ID
[Ref.: #20218]	Streptomyces noboritoensis gene for 16S rRNA, partial sequence	AB122756	564	ENA	67337 tax ID	*
[Ref.: #20218]	Streptomyces noboritoensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4557	D44229	120	ENA	67337 tax ID	*
[Ref.: #20218]	Streptomyces noboritoensis strain KCTC 9060 16S ribosomal RNA gene, partial sequence	AY999830	1421	ENA	67337 tax ID	*
[Ref.: #20218]	Streptomyces noboritoensis gene for 16S rRNA, partial sequence, strain: NBRC 13065	AB184287	1477	ENA	67337 tax ID	*

Availability in culture collections External links

[Ref.: #9280]

Culture collection no.

DSM 40223, ATCC 25477, CBS 887.69, IFO 13065, ISP 5223, JCM 4065, JCM 4557, NBRC 13065, NRRL B-12152, RIA 1257, BCRC 11553, CGMCC 4.1457, KCTC 9060, LMG 19337, NBIMCC 1862, VKM Ac-1012

[Ref.: #84514]

SI-ID 13348

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces sanyensis sp. nov., isolated from mangrove sediment.	Sui JL, Xu XX, Qu Z, Wang HL, Lin HP, Xie QY, Ruan JS, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.023515-0	2010	*

References

#9280

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40223

#19426

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#84514

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13348.1 )

* These data were automatically processed and therefore are not curated

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