Name: Streptomyces niveoruber Tü 32
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15426

Type strain:

Species: Streptomyces niveoruber

Strain Designation: Tü 32

Culture col. no.: DSM 40638, ATCC 14971, CGMCC AS 4.1395, IFO 15428, IMET 43354, JCM 4234, KCC S-0234, NBRC 15428, NRRL B-2724, ETH 17860, CGMCC 4.1395, NBIMCC 1172

Strain history: KCC S-0234 <-- Y. Okami <-- ETH 17860 <-- R. Corbaz.

NCBI tax ID(s): 68243 (species)

SI-ID 405188

DSM 40638

Special Collections

Other strains from Streptomyces niveoruber

Section

When using BacDive for research please cite our paper

Streptomyces niveoruber Tü 32 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces niveoruber**
	Full Scientific Name (LPSN)	Streptomyces niveoruber Ettlinger et al. 1958 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	positive Confidence in %99.6

[Ref.: #18664]	Colony color	Yellow orange (2000)
[Ref.: #18664]	Incubation period	10-14 days
[Ref.: #18664]	Cultivation medium used	ISP 2

[Ref.: #18664]	Colony color	Colorless
[Ref.: #18664]	Incubation period	10-14 days
[Ref.: #18664]	Cultivation medium used	ISP 3

[Ref.: #18664]	Colony color	Colorless
[Ref.: #18664]	Incubation period	10-14 days
[Ref.: #18664]	Cultivation medium used	ISP 4

[Ref.: #18664]	Colony color	Colorless
[Ref.: #18664]	Incubation period	10-14 days
[Ref.: #18664]	Cultivation medium used	ISP 5

[Ref.: #18664]	Colony color	Colorless
[Ref.: #18664]	Incubation period	10-14 days
[Ref.: #18664]	Cultivation medium used	ISP 6

[Ref.: #18664]	Colony color	Yellow
[Ref.: #18664]	Incubation period	10-14 days
[Ref.: #18664]	Cultivation medium used	ISP 7

[Ref.: #18664]	Multicellular complex forming ability	yes
[Ref.: #18664]	Multicellular complex name	Aerial Mycelium
[Ref.: #18664]	Multicellular complex color	Beige
[Ref.: #18664]	Medium Name (multicellularity)	ISP 2

[Ref.: #18664]	Multicellular complex forming ability	yes
[Ref.: #18664]	Multicellular complex name	Aerial Mycelium
[Ref.: #18664]	Multicellular complex color	Reddish
[Ref.: #18664]	Medium Name (multicellularity)	ISP 3

[Ref.: #18664]	Multicellular complex forming ability	yes
[Ref.: #18664]	Multicellular complex name	Aerial Mycelium
[Ref.: #18664]	Multicellular complex color	Reddish
[Ref.: #18664]	Medium Name (multicellularity)	ISP 4

[Ref.: #18664]	Multicellular complex forming ability	yes
[Ref.: #18664]	Multicellular complex name	Aerial Mycelium
[Ref.: #18664]	Multicellular complex color	White
[Ref.: #18664]	Medium Name (multicellularity)	ISP 5

[Ref.: #18664]	Multicellular complex forming ability	no
[Ref.: #18664]	Medium Name (multicellularity)	ISP 6

[Ref.: #18664]	Multicellular complex forming ability	yes
[Ref.: #18664]	Multicellular complex name	Aerial Mycelium
[Ref.: #18664]	Multicellular complex color	White
[Ref.: #18664]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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		Temperature
[Ref.: #9685]	growth	28 °C
[Ref.: #18664]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %90.744
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.4

[Ref.: #18664]	Spore description	Formation of spore chains (spirales)(Sp), spore surface smooth
[Ref.: #18664]	Ability of spore formation	yes
[Ref.: #125439]	Ability of spore formation	yes Confidence in %95
[Ref.: #125438]	Ability of spore formation	yes Confidence in %92.48

[Ref.: #9685]	Name of produced compound	cinerubin
[Ref.: #20216]	Name of produced compound	Cinerubine

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18664]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18664]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18664]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18664]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18664]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18664]	mannitol ChEBI	+
[Ref.: #18664]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18664]	raffinose ChEBI	-
[Ref.: #18664]	rhamnose ChEBI	-
[Ref.: #18664]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18664]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	cinerubin R	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18664]	181	-	+	+	+	-	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9685]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18664]	Biosafety level	1	German classification
[Ref.: #9685]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces niveoruber gene for 16S rRNA, partial sequence, strain: NBRC 15428	AB184675	1464	GenBank ENA	68243 tax ID
[Ref.: #20218]	Streptomyces niveoruber gene for 16S ribosomal RNA, partial sequence, strain: JCM 4234	D44035	120	GenBank ENA	68243 tax ID	*
[Ref.: #20218]	Streptomyces niveoruber strain NRRL B-2724 16S ribosomal RNA gene, partial sequence	DQ445796	1540	GenBank ENA	68243 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces niveoruber JCM 4234	GCA_014649135	scaffold	GenBank ENA	68243 tax ID	*
[Ref.: #66792]	Streptomyces niveoruber strain JCM 4234	68243.3	wgs	PATRIC	68243 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces niveoruber JCM 4234 NCBI: GCA_014649135.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	85.833	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.915	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	90.744	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	92.48	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces niveoruber JCM 4234 NCBI: GCA_014649135
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	95
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	89.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.4

Availability in culture collections External links

[Ref.: #9685]

Culture collection no.

DSM 40638, ATCC 14971, CGMCC AS 4.1395, IFO 15428, IMET 43354, JCM 4234, KCC S-0234, NBRC 15428, NRRL B-2724, ETH 17860, CGMCC 4.1395, NBIMCC 1172

[Ref.: #84513]

SI-ID 405188

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces zinciresistens sp. nov., a zinc-resistant actinomycete isolated from soil from a copper and zinc mine.	Lin YB, Wang XY, Li HF, Wang NN, Wang HX, Tang M, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.024018-0	2010	*
Phylogeny	Streptomyces alni sp. nov., a daidzein-producing endophyte isolated from a root of Alnus nepalensis D. Don.	Liu N, Wang H, Liu M, Gu Q, Zheng W, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65769-0	2009	*

References

#9685

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40638

#18664

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#84513

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405188.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Streptomyces niveoruber JCM 4234

Streptomyces niveoruber JCM 4234

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