Strain identifier
BacDive ID: 15427
Type strain: 
Species: Streptomyces noboritoensis
Strain Designation: IPCR 97
Strain history: KCC S-0065 <-- S. Suzuki 97.
NCBI tax ID(s): 67337 (species)
version 8.1 (current version)
General
@ref: 9280
BacDive-ID: 15427
DSM-Number: 40223
keywords: 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production
description: Streptomyces noboritoensis IPCR 97 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.
NCBI tax id
- NCBI tax id: 67337
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9280 | <- E.B. Shirling, ISP <- Y. Yagisawa <- S. Suzuki, IPCR, 97 |
| 67770 | KCC S-0065 <-- S. Suzuki 97. |
doi: 10.13145/bacdive15427.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces noboritoensis
- full scientific name: Streptomyces noboritoensis Isono et al. 1957 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Streptomyces melanogenes
@ref: 9280
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces noboritoensis
full scientific name: Streptomyces noboritoensis Isono et al. 1957 emend. Idris et al. 2017
strain designation: IPCR 97
type strain: yes
Morphology
colony morphology
| @ref | colony color | incubation period | medium used |
|---|---|---|---|
| 19426 | Brown/Red | 10-14 days | ISP 2 |
| 19426 | Brown/Red | 10-14 days | ISP 3 |
| 19426 | Brown/Red | 10-14 days | ISP 4 |
| 19426 | Brown | 10-14 days | ISP 5 |
| 19426 | Brown | 10-14 days | ISP 6 |
| 19426 | Brown | 10-14 days | ISP 7 |
multicellular morphology
| @ref | forms multicellular complex | complex name | complex color | medium name |
|---|---|---|---|---|
| 19426 | yes | Aerial Mycelium | White | ISP 2 |
| 19426 | yes | Aerial Mycelium | White | ISP 3 |
| 19426 | yes | Aerial Mycelium | White | ISP 4 |
| 19426 | yes | Aerial Mycelium | White | ISP 5 |
| 19426 | yes | Aerial Mycelium | White | ISP 6 |
| 19426 | yes | Aerial Mycelium | White | ISP 7 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9280 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 19426 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
| 19426 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
| 19426 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
| 19426 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
| 19426 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
| 19426 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19426 | positive | optimum | 28 | mesophilic |
| 9280 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
tolerance
- @ref: 19426
- compound: Lysozyme
- percentage: 0.1
spore formation
- @ref: 19426
- spore description: Formation of spore chains: rectiflixibilis, spore surface: smooth
- spore formation: yes
compound production
| @ref | compound |
|---|---|
| 9280 | blastomycin |
| 9280 | hygromycin |
| 20216 | Hygromycin |
| 20216 | Totomycin (Homomycin) |
| 20216 | Blastomycin |
halophily
- @ref: 19426
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 2.5 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68368 | 5291 | gelatin | + | hydrolysis |
| 68368 | 27897 | tryptophan | - | energy source |
| 68368 | 16199 | urea | + | hydrolysis |
| 68368 | 16947 | citrate | + | assimilation |
| 68368 | 18257 | ornithine | + | degradation |
| 68368 | 25094 | lysine | + | degradation |
| 68368 | 29016 | arginine | + | hydrolysis |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 67770 | 24753 | hygromycin | yes |
| 68368 | 15688 | acetoin | yes |
| 68368 | 35581 | indole | no |
| 68368 | 16136 | hydrogen sulfide | yes |
metabolite tests
| @ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
|---|---|---|---|---|
| 68368 | 15688 | acetoin | + | |
| 68368 | 35581 | indole | - |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68368 | gelatinase | + | |
| 68368 | tryptophan deaminase | - | 4.1.99.1 |
| 68368 | urease | + | 3.5.1.5 |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 |
| 68368 | lysine decarboxylase | + | 4.1.1.18 |
| 68368 | arginine dihydrolase | + | 3.5.3.6 |
| 68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
| @ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 19426 | + | + | + | + | + | + | + | - | - | + | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 9280 | soil | Kanagawa Prefecture, Kawasaki, Inada-Noborito | Japan | JPN | Asia |
| 67770 | Soil | Inada-Noborito, Kawasaki, Kanagawa Pref. | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 9280 | 1 | Risk group (German classification) |
| 19426 | 1 | Risk group (German classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces noboritoensis gene for 16S rRNA, partial sequence | AB122756 | 564 | ena | 67337 |
| 20218 | Streptomyces noboritoensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4557 | D44229 | 120 | ena | 67337 |
| 20218 | Streptomyces noboritoensis strain KCTC 9060 16S ribosomal RNA gene, partial sequence | AY999830 | 1421 | ena | 67337 |
| 20218 | Streptomyces noboritoensis gene for 16S rRNA, partial sequence, strain: NBRC 13065 | AB184287 | 1477 | ena | 67337 |
| 9280 | Streptomyces noboritoensis strain NBRC 13065 16S ribosomal RNA, partial sequence | NR_041107 | 1477 | nuccore | 67337 |
External links
@ref: 9280
culture collection no.: DSM 40223, ATCC 25477, CBS 887.69, IFO 13065, ISP 5223, JCM 4065, JCM 4557, NBRC 13065, NRRL B-12152, RIA 1257, BCRC 11553, CGMCC 4.1457, KCTC 9060, LMG 19337, NBIMCC 1862, VKM Ac-1012
straininfo link
- @ref: 84514
- straininfo: 13348
literature
- topic: Phylogeny
- Pubmed-ID: 20693357
- title: Streptomyces sanyensis sp. nov., isolated from mangrove sediment.
- authors: Sui JL, Xu XX, Qu Z, Wang HL, Lin HP, Xie QY, Ruan JS, Hong K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.023515-0
- year: 2010
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9280 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40223) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40223 | |||
| 19426 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40223.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 68368 | Automatically annotated from API 20E | |||||
| 84514 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13348.1 | StrainInfo: A central database for resolving microbial strain identifiers |