Name: Streptomyces noboritoensis KITA V-1179
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15398

Type strain:

Species: Streptomyces noboritoensis

Strain Designation: KITA V-1179

Culture col. no.: DSM 40192, ATCC 23937, CBS 921.68, IFO 12890, ISP 5192, JCM 4398, NBRC 12890, NRRL B-2072, RIA 1146, BCRC 12053, CGMCC 4.1979, NCIMB 9835

Strain history: KCC S-0398 <-- IFO 12890 <-- SAJ <-- ISP 5192 <-- Y. Yagisawa <-- T. Hata KITA V-1179.

NCBI tax ID(s): 67326 (species)

SI-ID 389364

ATCC 23937, IFO 12890, DSM 40192, JCM 4398, CCRC 12053, NCIMB 9835, NRRL B-2072, CBS 921.68, NBRC 12890, BCRC 12053, NCIB 9835, CGMCC 4.1979

Other strains from Streptomyces noboritoensis

S. noboritoensis IPCR 97, DSM 40223, ATCC 25477, ... (type strain)

Section

Streptomyces noboritoensis KITA V-1179 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces noboritoensis**
	Full Scientific Name (LPSN)	Streptomyces noboritoensis Isono et al. 1957 (Approved Lists 1980)

Synonym

Streptomyces melanogenes

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.066

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9254]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9254]

Culture medium growth

[Ref.: #9254]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9254]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9254]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9254]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %98
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9254]	Name of produced compound	melanomycin
[Ref.: #67770]	Name of produced compound	Melanomycin

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9254]	Sample type/isolated from	soil
[Ref.: #9254]	Geographic location (country and/or sea, region)	Tokyo, Komaba
[Ref.: #9254]	Country	Japan
[Ref.: #9254]	Country ISO 3 Code	JPN
[Ref.: #9254]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Komaba, Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9254]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9254]	Streptomyces melanogenes strain NBRC 12890 16S ribosomal RNA, partial sequence	NR_041089	1475	GenBank	67326 tax ID
[Ref.: #20218]	Streptomyces melanogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4398	D44113	120	ENA	67326 tax ID	*
[Ref.: #20218]	Streptomyces melanogenes gene for 16S rRNA, partial sequence, strain: NBRC 12890	AB184222	1475	ENA	67326 tax ID	*
[Ref.: #20218]	Streptomyces melanogenes strain NRRL B-2072T 16S ribosomal RNA gene, partial sequence	DQ442527	1528	ENA	67326 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces melanogenes JCM 4398	GCA_014649795	scaffold	GenBank	67326 tax ID	*
[Ref.: #66792]	Streptomyces melanogenes strain JCM 4398	67326.3	wgs	PATRIC	67326 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces melanogenes JCM 4398 NCBI: GCA_014649795.1
[Ref.: #69481]	spore-forming	yes	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces melanogenes JCM 4398 NCBI: GCA_014649795.1
[Ref.: #69480]	flagellated	no	97.34	no
[Ref.: #69480]	gram-positive	yes	88.398	no
[Ref.: #69480]	anaerobic	no	99.255	no
[Ref.: #69480]	aerobic	yes	89.124	no
[Ref.: #69480]	halophile	no	94.036	no
[Ref.: #69480]	spore-forming	yes	94.543	no
[Ref.: #69480]	glucose-util	yes	90.162	no
[Ref.: #69480]	thermophile	no	98.944	yes
[Ref.: #69480]	motile	no	90.929	no
[Ref.: #69480]	glucose-ferment	no	87.545	no

Availability in culture collections External links

[Ref.: #9254]

Culture collection no.

DSM 40192, ATCC 23937, CBS 921.68, IFO 12890, ISP 5192, JCM 4398, NBRC 12890, NRRL B-2072, RIA 1146, BCRC 12053, CGMCC 4.1979, NCIMB 9835

[Ref.: #84487]

SI-ID 389364

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces sanyensis sp. nov., isolated from mangrove sediment.	Sui JL, Xu XX, Qu Z, Wang HL, Lin HP, Xie QY, Ruan JS, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.023515-0	2010	*

References

#9254

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40192

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84487

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389364.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces melanogenes JCM 4398

Streptomyces melanogenes JCM 4398

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