Streptomyces nodosus DSM 40109 is a bacterium that was isolated from soil.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces nodosus |
| Full scientific name Streptomyces nodosus Trejo 1961 (Approved Lists 1980) |
| @ref: | 9320 |
| multimedia content: | DSM_40109.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_40109.jpg |
| caption: | Medium 252 28°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9320 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 9320 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | Medium recipe at MediaDive | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 96.593 |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125438 | 91.702 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 18536 | NaCl | positive | maximum | 2.5 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18536 | 22599 ChEBI | arabinose | - | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 18536 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 18536 | 28757 ChEBI | fructose | + | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 18536 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 18536 | 29864 ChEBI | mannitol | +/- | ||
| 18536 | 17268 ChEBI | myo-inositol | +/- | ||
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 18536 | 16634 ChEBI | raffinose | - | ||
| 18536 | 26546 ChEBI | rhamnose | - | ||
| 18536 | 17992 ChEBI | sucrose | - | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 18536 | 18222 ChEBI | xylose | + |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | gelatinase | + | from API 20E | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 100 | 6 of 6 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | gallate degradation | 100 | 5 of 5 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | cyanate degradation | 100 | 3 of 3 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | hydrogen production | 100 | 5 of 5 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | pentose phosphate pathway | 100 | 11 of 11 | ||
| 66794 | metabolism of amino sugars and derivatives | 100 | 5 of 5 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | ||
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | ||
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | ||
| 66794 | ribulose monophosphate pathway | 100 | 2 of 2 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | aspartate and asparagine metabolism | 100 | 9 of 9 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | ||
| 66794 | cellulose degradation | 100 | 5 of 5 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | leucine metabolism | 92.31 | 12 of 13 | ||
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | ||
| 66794 | propionate fermentation | 90 | 9 of 10 | ||
| 66794 | myo-inositol biosynthesis | 90 | 9 of 10 | ||
| 66794 | Entner Doudoroff pathway | 90 | 9 of 10 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 88.89 | 8 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | d-mannose degradation | 88.89 | 8 of 9 | ||
| 66794 | ketogluconate metabolism | 87.5 | 7 of 8 | ||
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | gluconeogenesis | 87.5 | 7 of 8 | ||
| 66794 | flavin biosynthesis | 86.67 | 13 of 15 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | photosynthesis | 85.71 | 12 of 14 | ||
| 66794 | arginine metabolism | 83.33 | 20 of 24 | ||
| 66794 | alanine metabolism | 82.76 | 24 of 29 | ||
| 66794 | glutamate and glutamine metabolism | 82.14 | 23 of 28 | ||
| 66794 | proline metabolism | 81.82 | 9 of 11 | ||
| 66794 | purine metabolism | 80.85 | 76 of 94 | ||
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 80 | 4 of 5 | ||
| 66794 | factor 420 biosynthesis | 80 | 4 of 5 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | NAD metabolism | 77.78 | 14 of 18 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | lipid metabolism | 77.42 | 24 of 31 | ||
| 66794 | methionine metabolism | 76.92 | 20 of 26 | ||
| 66794 | vitamin B12 metabolism | 76.47 | 26 of 34 | ||
| 66794 | glycolysis | 76.47 | 13 of 17 | ||
| 66794 | tryptophan metabolism | 76.32 | 29 of 38 | ||
| 66794 | dTDPLrhamnose biosynthesis | 75 | 6 of 8 | ||
| 66794 | toluene degradation | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | pyrimidine metabolism | 73.33 | 33 of 45 | ||
| 66794 | 3-phenylpropionate degradation | 73.33 | 11 of 15 | ||
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | ||
| 66794 | histidine metabolism | 72.41 | 21 of 29 | ||
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | ||
| 66794 | aclacinomycin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | glutathione metabolism | 71.43 | 10 of 14 | ||
| 66794 | non-pathway related | 71.05 | 27 of 38 | ||
| 66794 | oxidative phosphorylation | 70.33 | 64 of 91 | ||
| 66794 | phenol degradation | 70 | 14 of 20 | ||
| 66794 | urea cycle | 69.23 | 9 of 13 | ||
| 66794 | vitamin B1 metabolism | 69.23 | 9 of 13 | ||
| 66794 | degradation of sugar alcohols | 68.75 | 11 of 16 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | sphingosine metabolism | 66.67 | 4 of 6 | ||
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | degradation of pentoses | 64.29 | 18 of 28 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | arachidonate biosynthesis | 60 | 3 of 5 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 60 | 6 of 10 | ||
| 66794 | lysine metabolism | 59.52 | 25 of 42 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 58.33 | 7 of 12 | ||
| 66794 | isoprenoid biosynthesis | 57.69 | 15 of 26 | ||
| 66794 | degradation of sugar acids | 56 | 14 of 25 | ||
| 66794 | daunorubicin biosynthesis | 55.56 | 5 of 9 | ||
| 66794 | sulfate reduction | 53.85 | 7 of 13 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | dolichol and dolichyl phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | androgen and estrogen metabolism | 50 | 8 of 16 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | methanogenesis from CO2 | 50 | 6 of 12 | ||
| 66794 | vitamin E metabolism | 50 | 2 of 4 | ||
| 66794 | tyrosine metabolism | 50 | 7 of 14 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | degradation of hexoses | 50 | 9 of 18 | ||
| 66794 | resorcinol degradation | 50 | 1 of 2 | ||
| 66794 | polyamine pathway | 47.83 | 11 of 23 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 47.06 | 8 of 17 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 46.15 | 6 of 13 | ||
| 66794 | phenylpropanoid biosynthesis | 46.15 | 6 of 13 | ||
| 66794 | vitamin B6 metabolism | 45.45 | 5 of 11 | ||
| 66794 | carotenoid biosynthesis | 45.45 | 10 of 22 | ||
| 66794 | ascorbate metabolism | 45.45 | 10 of 22 | ||
| 66794 | cholesterol biosynthesis | 45.45 | 5 of 11 | ||
| 66794 | arachidonic acid metabolism | 44.44 | 8 of 18 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | propanol degradation | 42.86 | 3 of 7 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | vitamin K metabolism | 40 | 2 of 5 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | methane metabolism | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | allantoin degradation | 33.33 | 3 of 9 | ||
| 66794 | pantothenate biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | mevalonate metabolism | 28.57 | 2 of 7 | ||
| 66794 | chlorophyll metabolism | 27.78 | 5 of 18 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM870499v1 assembly for Streptomyces nodosus ATCC 14899 | complete | 40318 | 97.17 | ||||
| 66792 | Streptomyces nodosus strain ATCC 14899 | contig | 40318 | 79.8 | ||||
| 66792 | ASM1420503v1 assembly for Streptomyces nodosus DSM 40109 | contig | 40318 | 77.77 | ||||
| 66792 | ASM81954v1 assembly for Streptomyces nodosus ATCC 14899 | chromosome | 40318 | 66.25 | ||||
| 66792 | Streptomyces nodosus ATCC 14899 | complete | 40318 | 17.6 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces nodosus rrnB operon 16S ribosomal RNA, 23S ribosomal RNA, and 5S ribosomal RNA, complete sequence | AF114033 | 6195 | 40318 | ||
| 20218 | Streptomyces nodosus rrnD operon 16S ribosomal RNA, 23S ribosomal RNA, and 5S ribosomal RNA, complete sequence | AF114034 | 6169 | 40318 | ||
| 20218 | Streptomyces nodosus rrnE operon 16S ribosomal RNA, 23S ribosomal RNA, and 5S ribosomal RNA, complete sequence | AF114035 | 6174 | 40318 | ||
| 20218 | Streptomyces nodosus rrnF operon 16S ribosomal RNA, 23S ribosomal RNA, and 5S ribosomal RNA, complete sequence | AF114036 | 6175 | 40318 | ||
| 20218 | Streptomyces nodosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4656 | D44288 | 120 | 40318 | ||
| 20218 | Streptomyces nodosus gene for 16S rRNA, partial sequence, strain: NBRC 12895 | AB184226 | 1476 | 40318 | ||
| 20218 | Streptomyces nodosus strain NRRL B-2371 16S ribosomal RNA gene, partial sequence | DQ026661 | 1495 | 40318 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 70.9 | genome sequence analysis |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 96.59 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 96.66 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 83.48 | no |
| 125439 | motility | BacteriaNetⓘ | no | 91.69 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.92 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.07 | no |
| 125438 | aerobic | aerobicⓘ | yes | 89.87 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 91.70 | no |
| 125438 | thermophilic | thermophileⓘ | no | 93.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 91.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| First draft genome sequence data of TA4-1, the type strain of Gram-positive bacterium Streptomyces chiangmaiensis. | Yasawong M, Rosyidah A, Songngamsuk T, Phatcharaharikarn M, Ganta P, Chanthasena P, Chudapongse N, Santapan N, Srisakvarangkool W, Kerdtoob S, Nantapong N. | Data Brief | 10.1016/j.dib.2024.110611 | 2024 | ||
| Impact of interspecific interactions on antimicrobial activity among soil bacteria. | Tyc O, van den Berg M, Gerards S, van Veen JA, Raaijmakers JM, de Boer W, Garbeva P. | Front Microbiol | 10.3389/fmicb.2014.00567 | 2014 | ||
| Multifactorial genetic control and magnesium levels govern the production of a Streptomyces antibiotic with unusual cell density dependence. | Hindra, Elliot MA. | mSystems | 10.1128/msystems.01368-23 | 2024 | ||
| Sterol Sponge Mechanism Is Conserved for Glycosylated Polyene Macrolides. | Guo X, Zhang J, Li X, Xiao E, Lange JD, Rienstra CM, Burke MD, Mitchell DA. | ACS Cent Sci | 10.1021/acscentsci.1c00148 | 2021 | ||
| Metabolism | Community structure and antibiotic production of Streptomyces nodosus bioreactors cultured in liquid environments. | Pereira T, Nikodinovic J, Nakazono C, Dennis GR, Barrow KD, Chuck JA. | Microb Biotechnol | 10.1111/j.1751-7915.2008.00032.x | 2008 | |
| Tuning sterol extraction kinetics yields a renal-sparing polyene antifungal. | Maji A, Soutar CP, Zhang J, Lewandowska A, Uno BE, Yan S, Shelke Y, Murhade G, Nimerovsky E, Borcik CG, Arango AS, Lange JD, Marin-Toledo JP, Lyu Y, Bailey KL, Roady PJ, Holler JT, Khandelwal A, SantaMaria AM, Sanchez H, Juvvadi PR, Johns G, Hageman MJ, Krise J, Gebremariam T, Youssef EG, Bartizal K, Marr KA, Steinbach WJ, Ibrahim AS, Patterson TF, Wiederhold NP, Andes DR, Pogorelov TV, Schwieters CD, Fan TM, Rienstra CM, Burke MD. | Nature | 10.1038/s41586-023-06710-4 | 2023 | ||
| Metabolism | The in vitro characterization of polyene glycosyltransferases AmphDI and NysDI. | Zhang C, Moretti R, Jiang J, Thorson JS. | Chembiochem | 10.1002/cbic.200800349 | 2008 | |
| Streptomyces nodosus sp. n., the amphotericin-producing organism. | TREJO WH, BENNETT RE. | J Bacteriol | 10.1128/jb.85.2.436-439.1963 | 1963 | ||
| Metabolism | Use of direct-infusion electrospray mass spectrometry to guide empirical development of improved conditions for expression of secondary metabolites from actinomycetes. | Zahn JA, Higgs RE, Hilton MD. | Appl Environ Microbiol | 10.1128/aem.67.1.377-386.2001 | 2001 | |
| Metabolism | Prescreening bacterial colonies for bioactive molecules with Janus plates, a SBS standard double-faced microbial culturing system. | Sanchez-Hidalgo M, Pascual J, de la Cruz M, Martin J, Kath GS, Sigmund JM, Masurekar P, Vicente F, Genilloud O, Bills GF. | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9746-7 | 2012 | |
| In Situ Raman Hyperspectral Analysis of Microbial Colonies for Secondary Metabolites Screening. | Suwa S, Ando M, Nakashima T, Horii S, Anai T, Takeyama H. | Anal Chem | 10.1021/acs.analchem.4c02906 | 2024 | ||
| Metabolism | In situ detection of antibiotic amphotericin B produced in Streptomyces nodosus using Raman microspectroscopy. | Miyaoka R, Hosokawa M, Ando M, Mori T, Hamaguchi HO, Takeyama H. | Mar Drugs | 10.3390/md12052827 | 2014 | |
| Identification of the peptide epimerase MslH responsible for d-amino acid introduction at the C-terminus of ribosomal peptides. | Feng Z, Ogasawara Y, Dairi T. | Chem Sci | 10.1039/d0sc06308h | 2020 | ||
| Biosynthesis of a new skyllamycin in Streptomyces nodosus: a cytochrome P450 forms an epoxide in the cinnamoyl chain. | Song Y, Amaya JA, Murarka VC, Mendez H, Hogan M, Muldoon J, Evans P, Ortin Y, Kelly SL, Lamb DC, Poulos TL, Caffrey P. | Org Biomol Chem | 10.1039/d4ob00178h | 2024 | ||
| Mechanism Analysis of Amphotericin B Controlling Postharvest Gray Mold in Table Grapes. | Wu Y, Wang J, Wang S, Ke Y, Ren T, Wang Y. | Foods | 10.3390/foods14071260 | 2025 | ||
| Analysis of the effects of different nitrogen sources and calcium on the production of amphotericin by Streptomyces nodosus based on comparative transcriptome. | Huang K, Zhang B, Chen Y, Wu ZM, Liu ZQ, Zheng YG. | Biotechnol Appl Biochem | 10.1002/bab.2221 | 2022 | ||
| Characterisation of Modular Polyketide Synthases Designed to Make Pentaene Analogues of Amphotericin B. | Song Y, Hogan M, Muldoon J, Evans P, Caffrey P. | Molecules | 10.3390/molecules29061396 | 2024 | ||
| A real-world study based on the FAERS database evaluating adverse drug reactions in three amphotericin B lipid formulations. | Tong B, Wang J, Zhang Y, Liu Y, Wang J, Duan L, Yan Y, Sun Q, Luan Y, Yu J, Zhou C. | J Pharm Policy Pract | 10.1080/20523211.2025.2514155 | 2025 | ||
| Acquired amphotericin B resistance attributed to a mutated ERG3 in Candidozyma auris. | Massic L, Doorley LA, Jones SJ, Richardson I, Siao DD, Siao L, Dykema P, Hua C, Schneider E, Cuomo CA, Rogers PD, Van Hooser S, Parker JE, Kelly SL, Hess D, Rybak JM, Pandori M. | Antimicrob Agents Chemother | 10.1128/aac.00601-25 | 2025 | ||
| Antifungal Effects of the Phloroglucinol Derivative DPPG Against Pathogenic Aspergillus fumigatus. | Wang L, He J, Feng H, Li Q, Song M, Gou H, He Y, Zhu K. | Antibiotics (Basel) | 10.3390/antibiotics14050499 | 2025 | ||
| Amphotericin B May Decrease the Serum Level of Voriconazole: A Case Report and Brief Review of Literature. | Hu Z, Zhou H. | Infect Drug Resist | 10.2147/idr.s374853 | 2022 | ||
| Artificial Lipidation of Antifungal Proteins and Antifungal Behavior: A Case Study with Cholesterylation. | Safaat M, Uchida K, Santoso P, Sato R, Taira T, Wakabayashi R, Goto M, Kamiya N. | Chembiochem | 10.1002/cbic.202401081 | 2025 | ||
| Metabolism | Improvement of amphotericin B production by a newly isolated Streptomyces nodosus mutant. | Zhang B, Zhang HD, Zhou YT, Huang K, Liu ZQ, Zheng YG. | Biotechnol Appl Biochem | 10.1002/bab.1579 | 2018 | |
| Two New Lactam Derivatives from Micromelum falcatum (Lour.) Tan. with Brine Shrimp Larvae Toxicity. | Liu B, Jin X, Chen X, Wang X, Zhang W, Luo X. | Molecules | 10.3390/molecules28207157 | 2023 | ||
| A novel pan-fungal screening platform for antifungal drug discovery: proof of principle study. | Inman R, Warris A, Bignell E. | Antimicrob Agents Chemother | 10.1128/aac.01328-24 | 2025 | ||
| Advanced Spectroscopic and Theoretical Study and Assessment of Antimycotic Potential in a Synergistic Composition of a 1,3,4-Thiadiazole Derivative and Amphotericin B | Slusarczyk L, Murzyniec M, Gurba M, Rachwal K, Gorecki A, Hooper J, Gagos M, Matwijczuk A. | ACS Omega | ||||
| Pathogenicity | Engineered biosynthesis and characterisation of disaccharide-modified 8-deoxyamphoteronolides. | Walmsley S, De Poire E, Rawlings B, Caffrey P. | Appl Microbiol Biotechnol | 10.1007/s00253-016-7986-6 | 2017 | |
| Liposomal amphotericin B-induced reversible ototoxicity in a patient with disseminated histoplasmosis. | Ramu R, Sharma B, Karunakara D, Paliwal P, Bansal N, Taneja RS. | Indian J Pharmacol | 10.4103/0253-7613.316948 | 2021 | ||
| Genetics | Exploiting the genome sequence of Streptomyces nodosus for enhanced antibiotic production. | Sweeney P, Murphy CD, Caffrey P. | Appl Microbiol Biotechnol | 10.1007/s00253-015-7060-9 | 2016 | |
| Identification of Novel Flavonoids and Ansa-Macrolides with Activities against Leishmania donovani through Natural Product Library Screening. | Phan TN, Lee H, Baek KH, No JH. | Pathogens | 10.3390/pathogens13030213 | 2024 | ||
| Structural analysis of P450 AmphL from Streptomyces nodosus provides insights into substrate selectivity of polyene macrolide antibiotic biosynthetic P450s. | Amaya JA, Lamb DC, Kelly SL, Caffrey P, Murarka VC, Poulos TL. | J Biol Chem | 10.1016/j.jbc.2022.101746 | 2022 | ||
| Identification of RimR2 as a positive pathway-specific regulator of rimocidin biosynthesis in Streptomyces rimosus M527. | Li H, Hu Y, Zhang Y, Ma Z, Bechthold A, Yu X. | Microb Cell Fact | 10.1186/s12934-023-02039-9 | 2023 | ||
| Paving the way for affordable and equitable liposomal amphotericin B access worldwide. | Lee JSF, Cohen RM, Khan RA, Burry J, Casas EC, Chung HY, Costa LH, Ford N, Galvao DLN, Giron N, Jarvis JN, Mondal M, Odionyi JJ, Casas CP, Rangaraj A, Rode J, Ruffell C, Sued O, Ribeiro I. | Lancet Glob Health | 10.1016/s2214-109x(24)00225-0 | 2024 | ||
| Genetics | Nitric oxide synthase-guided genome mining identifies a cytochrome P450 enzyme for olefin nitration in bacterial specialized metabolism. | Li H, Li W, Song K, Liu Y, Zhao G, Du YL. | Synth Syst Biotechnol | 10.1016/j.synbio.2024.01.005 | 2024 | |
| Invasive fungal infections in critically ill children: epidemiology, risk factors and antifungal drugs. | Hon KLE, Chan VP, Leung AK, Leung KKY, Hui WF. | Drugs Context | 10.7573/dic.2023-9-2 | 2024 | ||
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| Metabolism | Enhancement of Antibacterial Activity of Paludifilum halophilum and Identification of N-(1-Carboxy-ethyl)-phthalamic Acid as the Main Bioactive Compound. | Frikha-Dammak D, Fakhfakh J, Belhaj D, Bouattour E, Ayadi H, Chaabouni M, Ayadi H, Maalej S. | Biomed Res Int | 10.1155/2020/4805706 | 2020 | |
| Isolation of Actinomycetes with Cellulolytic and Antimicrobial Activities from Soils Collected from an Urban Green Space in the Philippines. | Daquioag JEL, Penuliar GM, Penuliar GM. | Int J Microbiol | 10.1155/2021/6699430 | 2021 | ||
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| Mining for natural product antileishmanials in a fungal extract library. | Mbekeani AJ, Jones RS, Bassas Llorens M, Elliot J, Regnault C, Barrett MP, Steele J, Kebede B, Wrigley SK, Evans L, Denny PW. | Int J Parasitol Drugs Drug Resist | 10.1016/j.ijpddr.2019.05.003 | 2019 | ||
| Preparation, Characterization, and In Vivo Pharmacokinetic Study of the Supercritical Fluid-Processed Liposomal Amphotericin B. | Lim CB, Abuzar SM, Karn PR, Cho W, Park HJ, Cho CW, Hwang SJ. | Pharmaceutics | 10.3390/pharmaceutics11110589 | 2019 | ||
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| #20216 | Curators of the JMRC: Jena Microbial Resource Collection (JMRC): |
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| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive15428.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data