Arthrobacter sp. (DSM 102321, Leaf141)

Name: Arthrobacter sp. (DSM 102321, Leaf141)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131609

Type strain

Strain Designation Leaf141

Culture col. no. DSM 102321 Leaf141

NCBI tax ID(s) 1667

Special Collections DSMZ Arabidopsis

History DSMZ <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf141 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

Links

Leaf141 is a bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 407892

DSM 102321

@ref 20215

Last LPSN update 2026-05-29 08:37:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Arthrobacter

Full scientific name Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)

Synonyms (1)

Crystallibacter

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		90.5
125438		90.954	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23405	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23405	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.807

Spore formation

@ref	Spore formation	Confidence
125439		94.047

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23405	leaf of Arabidopsis thaliana, wild-type genotype	Arabidopsis thaliana	Hoengg (47.4090306N 8.470169444E)	Switzerland	CHE	Europe	47.409	8.4702 47.409/8.4702

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Leaf141 assembly for Arthrobacter sp. Leaf141	scaffold	GCA_001424565	1736273.3	2643221810	1736273	46.96

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leaf141 assembly for Arthrobacter sp. Leaf141
BV-BRC: 1736273.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.87	no
125439	motility	BacteriaNetⓘ	yes	53.83	no
125439	gram_stain	BacteriaNetⓘ	negative	54.50	no
125439	spore_formation	BacteriaNetⓘ	no	94.05	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arthrobacter sp. Leaf141 Leaf141
NCBI: GCA_001424565.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.95	no
125438	anaerobic	anaerobicⓘ	no	97.64	no
125438	aerobic	aerobicⓘ	yes	91.81	no
125438	spore-forming	spore-formingⓘ	no	61.10	no
125438	thermophilic	thermophileⓘ	no	97.75	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23405	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102321
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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