Cite this strain

Arthrobacter sp. (JCM 31232)

Name: Arthrobacter sp. (JCM 31232)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163972

Type strain

Culture col. no. JCM 31232

NCBI tax ID(s) 1667

Special Collections JCM

Links

JCM 31232 is a mesophilic prokaryote that was isolated from Soil at Hiyoriyama, affected by the 2011 Great East Japan Earthquake tsunami.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 131321

JCM 31232

@ref 20215

Last LPSN update 2025-12-16 10:09:21

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Arthrobacter

Full scientific name Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)

Synonyms (1)

Crystallibacter

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98.7

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	99.9

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Soil at Hiyoriyama, affected by the 2011 Great East Japan Earthquake tsunami	Sendai, Miyagi Pref.	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM126361v2 assembly for Arthrobacter sp. Hiyo1	scaffold	GCA_001263615	1588020.3	2775507016	1588020

Genome browser: GCA_001263615

GC content

@ref	GC-content (mol%)	Method
67770	63.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arthrobacter sp. Hiyo1
NCBI: GCA_001263615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	53.00	no
125439	motility	BacteriaNetⓘ	no	77.00	no
125439	gram_stain	BacteriaNetⓘ	positive	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arthrobacter sp. Hiyo1 Hiyo1
NCBI: GCA_001263615.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.43	no
125438	anaerobic	anaerobicⓘ	no	96.82	no
125438	aerobic	aerobicⓘ	yes	87.99	no
125438	spore-forming	spore-formingⓘ	no	70.46	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	79.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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