Archive BacDiveID:10.13145/bacdive131609.20230509.8.1

Strain identifier

BacDive ID: 131609

Type strain:

Species: Arthrobacter sp.

Strain Designation: Leaf141

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf141 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1667 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23405

BacDive-ID: 131609

DSM-Number: 102321

keywords: genome sequence, Bacteria, mesophilic

description: Arthrobacter sp. Leaf141 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

NCBI tax id: 1667
Matching level: species

strain history

@ref: 23405
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf141 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131609.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter sp.
full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)

@ref: 23405

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter sp.

full scientific name: Arthrobacter sp.

strain designation: Leaf141

type strain: no

Culture and growth conditions

culture medium

@ref: 23405
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 23405
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23405
sample type: leaf of Arabidopsis thaliana, wild-type genotype
host species: Arabidopsis thaliana
geographic location: Hoengg (47.4090306N 8.470169444E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.409
longitude: 8.4702

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Arthrobacter sp. Leaf141	GCA_001424565	scaffold	ncbi	1736273
66792	Arthrobacter sp. Leaf141	1736273.3	wgs	patric	1736273
66792	Arthrobacter sp. Leaf141	2643221810	draft	img	1736273

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	96.519	no
gram-positive	yes	94.048	no
anaerobic	no	99.771	no
aerobic	yes	96.517	no
halophile	no	88.295	no
spore-forming	no	85.719	no
thermophile	no	98.96	yes
glucose-util	yes	87.253	no
motile	no	89.389	no
glucose-ferment	no	87.167	no

External links

@ref: 23405

culture collection no.: DSM 102321

straininfo link

@ref: 90015
straininfo: 407892

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23405	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102321	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102321)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90015	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID407892.1