Name: Myxococcus virescens 38
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 9805

Type strain:

Species: Myxococcus virescens

Strain Designation: 38

Culture col. no.: DSM 4946, ATCC 51243, IAM 13189, JCM 6245, CIP 107135, IAM 14540, KCTC 9843, NBRC 100081

Strain history: CIP <- 2001, JCM <- S. Yamanaka: strain 38

NCBI tax ID(s): 83456 (species)

SI-ID 42874

ATCC 51243, JCM 6245, IAM 13189, DSM 4946, KCTC 9843, CIP 107135, IAM 14540, NBRC 100081, DSM 4969

Special Collections

Other strains from Myxococcus virescens

Section

Myxococcus virescens 38 is a microaerophile, Gram-negative, rod-shaped bacterium that was isolated from soil of seaside.

Gram-negative
rod-shaped
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Myxococcaceae*
	Genus	*Myxococcus*
	Species	**Myxococcus virescens**
	Full Scientific Name (LPSN)	Myxococcus virescens Thaxter 1892 (Approved Lists 1980)

Synonym

Myxococcus flavescens

Information on morphological and physiological properties Morphology

[Ref.: #119371]	Gram stain	negative

[Ref.: #119371]	Cell shape	rod-shaped

[Ref.: #119371]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1885]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #1885]

Culture medium growth

[Ref.: #1885]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1885]

Culture medium composition

expand / minimize

[Ref.: #1885]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #1885]

Culture medium growth

[Ref.: #1885]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1885]

Culture medium composition

expand / minimize

[Ref.: #33632]

Culture medium

MEDIUM 390 - for Myxococcus flavescens

[Ref.: #33632]

Culture medium growth

[Ref.: #33632]

Culture medium composition

expand / minimize

[Ref.: #119371]

Culture medium

CIP Medium 390

[Ref.: #119371]

Culture medium growth

[Ref.: #119371]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1885]		growth	30 °C
[Ref.: #33632]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #119371]		growth	25-37 °C
[Ref.: #119371]	no	growth	5 °C
[Ref.: #119371]	no	growth	10 °C
[Ref.: #119371]	no	growth	15 °C
[Ref.: #119371]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119371]

Oxygen tolerance

microaerophile

	Salt	Tested relation		Salt conc.
[Ref.: #119371]	NaCl		growth	0	%
[Ref.: #119371]	NaCl	no	growth	2	%
[Ref.: #119371]	NaCl	no	growth	4	%
[Ref.: #119371]	NaCl	no	growth	6	%
[Ref.: #119371]	NaCl	no	growth	8	%
[Ref.: #119371]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119371]	citrate ChEBI	-	carbon source
[Ref.: #119371]	esculin ChEBI	-	hydrolysis
[Ref.: #119371]	nitrate ChEBI	-	reduction
[Ref.: #119371]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119371]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #119371]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119371]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119371]	amylase	+
[Ref.: #119371]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119371]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119371]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119371]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119371]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119371]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119371]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119371]	oxidase	-
[Ref.: #119371]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119371]	tryptophan deaminase	-
[Ref.: #119371]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119371]	10093	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1885]	Sample type/isolated from	soil of seaside
[Ref.: #1885]	Geographic location (country and/or sea, region)	Kanagawa
[Ref.: #1885]	Country	Japan
[Ref.: #1885]	Country ISO 3 Code	JPN
[Ref.: #1885]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of seaside
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanagawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #119371]	Sample type/isolated from	Environment, Soil, seaside
[Ref.: #119371]	Geographic location (country and/or sea, region)	Kanagawa
[Ref.: #119371]	Country	Japan
[Ref.: #119371]	Country ISO 3 Code	JPN
[Ref.: #119371]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB218220 (>99% sequence identity) for Myxococcaceae from Microbeatlas

Aquatic Samples	816
Soil Samples	6158
Animal Samples	759
Plant Samples	1196
Total Samples	8929

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1885]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119371]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1885]	Myxococcus virescens strain DSM 4946 16S ribosomal RNA gene, partial sequence	DQ768130	1493	GenBank ENA	83456 tax ID
[Ref.: #67770]	Myxococcus flavescens gene for 16S rRNA, partial sequence, strain: NBRC 100081	AB218220	1463	GenBank ENA	83456 tax ID
[Ref.: #124043]	Myxococcus flavescens gene for 16S-23S rRNA internal transcribed spacer regions, partial sequence, strain: NBRC 100081.	AB218254	725	GenBank ENA	83456 tax ID	*

[Ref.: #1885]	GC-content	67.1 mol%
[Ref.: #67770]	GC-content	67.1 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #1885]

Culture collection no.

DSM 4946, ATCC 51243, IAM 13189, JCM 6245, CIP 107135, IAM 14540, KCTC 9843, NBRC 100081

[Ref.: #79184]

SI-ID 42874

References

#1885

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4946

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33632 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#79184

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42874.1 )

#119371 Collection of Institut Pasteur ; Curators of the CIP; CIP 107135

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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