Name: Myxococcus virescens M22
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 9804

Type strain:

Species: Myxococcus virescens

Strain Designation: M22

Culture col. no.: DSM 2260, ATCC 25203

Strain history: <- ATCC <- H.D. McCurdy, M22

NCBI tax ID(s): 83456 (species)

SI-ID 38412

ATCC 25203, NCIMB 13350, CECT 4290, NBRC 100334, DSM 2260

Special Collections

DSMZ

Other strains from Myxococcus virescens

Section

Myxococcus virescens M22 is a Gram-negative bacterium that was isolated from soil.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Myxococcaceae*
	Genus	*Myxococcus*
	Species	**Myxococcus virescens**
	Full Scientific Name (LPSN)	Myxococcus virescens Thaxter 1892 (Approved Lists 1980)

Synonym

Myxococcus flavescens

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1008]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #1008]

Culture medium growth

[Ref.: #1008]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1008]

Culture medium composition

expand / minimize

[Ref.: #1008]

Culture medium

SP - MEDIUM (DSMZ Medium 222)

[Ref.: #1008]

Culture medium growth

[Ref.: #1008]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1008]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1008]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1008]	Sample type/isolated from	soil
[Ref.: #1008]	Country	Canada
[Ref.: #1008]	Country ISO 3 Code	CAN
[Ref.: #1008]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB218225 (>99% sequence identity) for Myxococcaceae from Microbeatlas

Aquatic Samples	816
Soil Samples	6158
Animal Samples	759
Plant Samples	1196
Total Samples	8929

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1008]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1008]	Myxococcus virescens strain DSM 2260 16S ribosomal RNA gene, partial sequence	DQ768119	1493	GenBank ENA	83456 tax ID
[Ref.: #20218]	Myxococcus virescens strain ATCC 25203 16S ribosomal RNA gene, partial sequence	AF503459	721	GenBank ENA	83456 tax ID	*
[Ref.: #20218]	Myxococcus virescens gene for 16S rRNA, partial sequence, strain: NBRC 100334	AB218225	1463	GenBank ENA	83456 tax ID	*
[Ref.: #20218]	Myxococcus virescens gene for 16S-23S rRNA internal transcribed spacer regions, partial sequence, strain: NBRC 100334, A type	AB218260	732	GenBank ENA	83456 tax ID	*
[Ref.: #20218]	Myxococcus virescens gene for 16S-23S rRNA internal transcribed spacer regions, partial sequence, strain: NBRC 100334, B type	AB218261	637	GenBank ENA	83456 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Myxococcus virescens DSM 2260	GCA_900101905	scaffold	GenBank ENA	83456 tax ID	*
[Ref.: #66792]	Myxococcus virescens strain DSM 2260	83456.3	wgs	PATRIC	83456 tax ID	*
[Ref.: #66792]	Myxococcus virescens DSM 2260	2619619029	draft	JGI IMG/M	83456 tax ID	*

[Ref.: #1008]

GC-content

67.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Myxococcus virescens DSM 2260 NCBI: GCA_900101905.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	65	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Myxococcus virescens DSM 2260 NCBI: GCA_900101905.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	89.976	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.803	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.649	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	72.016	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.302	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	61.326	no

Availability in culture collections External links

[Ref.: #1008]

Culture collection no.

DSM 2260, ATCC 25203

[Ref.: #79183]

SI-ID 38412

References

#1008

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2260

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79183

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38412.1 )

* These data were automatically processed and therefore are not curated

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Myxococcus virescens DSM 2260

Myxococcus virescens DSM 2260

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