Myxococcus fulvus M17 is a mesophilic prokaryote that was isolated from soil.
mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Deltaproteobacteria |
| Order Myxococcales |
| Family Myxococcaceae |
| Genus Myxococcus |
| Species Myxococcus fulvus |
| Full scientific name Myxococcus fulvus (Cohn 1875) Jahn 1911 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 6390 | VY/2 AGAR (DSMZ Medium 9) | Medium recipe at MediaDive | Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 6390 | positive | growth | 30 | mesophilic |
| 6390 | Sample typesoil |
Global distribution of 16S sequence AB218224 (>99% sequence identity) for Myxococcaceae from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | IMG-taxon 2693429886 annotated assembly for Myxococcus fulvus DSM 16525 | scaffold | 33 | 68.61 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Myxococcus fulvus gene for 16S rRNA, partial sequence, strain: NBRC 100333 | AB218224 | 1463 | 33 | ||
| 20218 | Myxococcus fulvus gene for 16S-23S rRNA internal transcribed spacer regions, partial sequence, strain: NBRC 100333 | AB218259 | 725 | 33 | ||
| 6390 | Myxococcus fulvus strain ATCC 25199 16S ribosomal RNA gene, partial sequence | DQ768117 | 1493 | 33 |
| 6390 | GC-content (mol%)69 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 81.00 | no |
| 125439 | motility | BacteriaNetⓘ | no | 88.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 85.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 90.98 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 93.74 | no |
| 125438 | aerobic | aerobicⓘ | yes | 82.37 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 73.75 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.02 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 59.61 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Assembly strategies for rubber-degrading microbial consortia based on omics tools. | Cui C, Jiang M, Zhang C, Zhang N, Jin FJ, Li T, Lee HG, Jin L. | Front Bioeng Biotechnol | 10.3389/fbioe.2023.1326395 | 2023 | |
| Metabolism | An Orphan MbtH-Like Protein Interacts with Multiple Nonribosomal Peptide Synthetases in Myxococcus xanthus DK1622. | Esquilin-Lebron KJ, Boynton TO, Shimkets LJ, Thomas MG. | J Bacteriol | 10.1128/jb.00346-18 | 2018 | |
| Metabolism | Functional characterization of a novel arachidonic acid 12S-lipoxygenase in the halotolerant bacterium Myxococcus fulvus exhibiting complex social living patterns. | Goloshchapova K, Stehling S, Heydeck D, Blum M, Kuhn H. | Microbiologyopen | 10.1002/mbo3.775 | 2019 | |
| Phylogeny | Myxobacterial Predation: A Standardised Lawn Predation Assay Highlights Strains with Unusually Efficient Predatory Activity. | Zwarycz AS, Whitworth DE. | Microorganisms | 10.3390/microorganisms11020398 | 2023 | |
| Approach to analyze the diversity of myxobacteria in soil by semi-nested PCR-denaturing gradient gel electrophoresis (DGGE) based on taxon-specific gene. | Li B, Yao Q, Zhu H. | PLoS One | 10.1371/journal.pone.0108877 | 2014 | ||
| Genetics | A Genomic Survey of Signalling in the Myxococcaceae. | Whitworth DE, Zwarycz A. | Microorganisms | 10.3390/microorganisms8111739 | 2020 | |
| Phylogeny | Isolation and identification of myxobacteria from saline-alkaline soils in Xinjiang, China. | Zhang X, Yao Q, Cai Z, Xie X, Zhu H. | PLoS One | 10.1371/journal.pone.0070466 | 2013 | |
| Genetics | Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics. | Garcia R, La Clair JJ, Muller R. | Mar Drugs | 10.3390/md16090303 | 2018 | |
| Genetics | Discovery of the autonomously replicating plasmid pMF1 from Myxococcus fulvus and development of a gene cloning system in Myxococcus xanthus. | Zhao JY, Zhong L, Shen MJ, Xia ZJ, Cheng QX, Sun X, Zhao GP, Li YZ, Qin ZJ. | Appl Environ Microbiol | 10.1128/aem.02143-07 | 2008 | |
| Phylogeny | Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria. | Brinkhoff T, Fischer D, Vollmers J, Voget S, Beardsley C, Thole S, Mussmann M, Kunze B, Wagner-Dobler I, Daniel R, Simon M. | ISME J | 10.1038/ismej.2011.190 | 2012 | |
| Phylogeny | Phylogenetic comparison of retron elements among the myxobacteria: evidence for vertical inheritance. | Rice SA, Lampson BC. | J Bacteriol | 10.1128/jb.177.1.37-45.1995 | 1995 | |
| Biotechnology | Detection of Salmonella spp. in oysters by PCR. | Bej AK, Mahbubani MH, Boyce MJ, Atlas RM. | Appl Environ Microbiol | 10.1128/aem.60.1.368-373.1994 | 1994 |
| #6390 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16525 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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