Strain identifier
BacDive ID: 9593
Type strain: 
Species: Myxococcus fulvus
Strain Designation: M17
Strain history: <- ATCC <- H. D. McCurdy, University of Windsor, Canada
NCBI tax ID(s): 33 (species)
version 8.1 (current version)
General
@ref: 6390
BacDive-ID: 9593
DSM-Number: 16525
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-negative
description: Myxococcus fulvus M17 is a spore-forming, mesophilic, Gram-negative bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 33
- Matching level: species
strain history
- @ref: 6390
- history: <- ATCC <- H. D. McCurdy, University of Windsor, Canada
doi: 10.13145/bacdive9593.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Myxococcaceae
- genus: Myxococcus
- species: Myxococcus fulvus
- full scientific name: Myxococcus fulvus (Cohn 1875) Jahn 1911 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Micrococcus fulvus
@ref: 6390
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Myxococcaceae
genus: Myxococcus
species: Myxococcus fulvus
full scientific name: Myxococcus fulvus (Cohn 1875) Jahn 1911
strain designation: M17
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.834
Culture and growth conditions
culture medium
- @ref: 6390
- name: VY/2 AGAR (DSMZ Medium 9)
- growth: yes
- link: https://mediadive.dsmz.de/medium/9
- composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
culture temp
- @ref: 6390
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 94 |
| 69480 | no | 98.142 |
Isolation, sampling and environmental information
isolation
- @ref: 6390
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_4098.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_863;98_1007;99_4098&stattab=map
- Last taxonomy: Myxococcaceae
- 16S sequence: AB218224
- Sequence Identity:
- Total samples: 1445
- soil counts: 1093
- aquatic counts: 140
- animal counts: 115
- plant counts: 97
Safety information
risk assessment
- @ref: 6390
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Myxococcus fulvus gene for 16S rRNA, partial sequence, strain: NBRC 100333 | AB218224 | 1463 | ena | 33 |
| 20218 | Myxococcus fulvus gene for 16S-23S rRNA internal transcribed spacer regions, partial sequence, strain: NBRC 100333 | AB218259 | 725 | ena | 33 |
| 6390 | Myxococcus fulvus strain ATCC 25199 16S ribosomal RNA gene, partial sequence | DQ768117 | 1493 | ena | 33 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Myxococcus fulvus DSM 16525 | GCA_900111765 | scaffold | ncbi | 33 |
| 66792 | Myxococcus fulvus strain DSM 16525 | 33.18 | wgs | patric | 33 |
| 66792 | Myxococcus fulvus DSM 16525 | 2693429886 | draft | img | 33 |
GC content
- @ref: 6390
- GC-content: 69
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 94 | no |
| motile | no | 58.055 | no |
| flagellated | no | 88.126 | no |
| gram-positive | no | 95.43 | no |
| anaerobic | no | 98.266 | no |
| aerobic | yes | 88.328 | no |
| halophile | no | 92.364 | no |
| spore-forming | no | 79.898 | no |
| glucose-ferment | no | 88.17 | no |
| thermophile | no | 98.827 | no |
| glucose-util | yes | 77.257 | no |
External links
@ref: 6390
culture collection no.: DSM 16525, ATCC 25199
straininfo link
- @ref: 78972
- straininfo: 46637
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6390 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16525) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16525 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 78972 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46637.1 | StrainInfo: A central database for resolving microbial strain identifiers |