Name: Actinoplanes ianthinogenes A/1668/18V
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7817

Type strain:

Species: Actinoplanes ianthinogenes

Strain Designation: A/1668/18V, A1668

Culture col. no.: DSM 43864, ATCC 21884, BCRC 13611, IFO 13996, IMET 9253, IMSNU 20032, JCM 3249, KCTC 9347, KCTC 9592, NBRC 13996, NCIMB 12639, NRRL B-16720, PSA A 1668/18 V, BCC 49178, TBRC 170

Strain history: KCC A-0249 <-- SANK 60578 <-- ATCC 21884 <-- Lepetit A/1668.

NCBI tax ID(s): 122358 (species)

SI-ID 88616

ATCC 21884, DSM 43864, IFO 13996, IMET 9253, JCM 3249, CCRC 13611, NCIMB 12639, NRRL B-16720, ATCC 12884, KCTC 9592, KCTC 9347, NBRC 13996, BCRC 13611

Special Collections

Section

Actinoplanes ianthinogenes A/1668/18V is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes ianthinogenes**
	Full Scientific Name (LPSN)	Actinoplanes ianthinogenes (ex Coronelli et al. 1974) Tamura et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11345]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #11345]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #11345]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %99

[Ref.: #11345]	Name of produced compound	purpuromycine
[Ref.: #67770]	Name of produced compound	Purpuromycin

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11345]	Sample type/isolated from	soil
[Ref.: #11345]	Geographic location (country and/or sea, region)	Blumenau
[Ref.: #11345]	Country	Brazil
[Ref.: #11345]	Country ISO 3 Code	BRA
[Ref.: #11345]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Blumenau
[Ref.: #67770]	Country	Brazil
[Ref.: #67770]	Country ISO 3 Code	BRA
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ277576 (>99% sequence identity) for Actinoplanes ianthinogenes from Microbeatlas

Aquatic Samples	2
Soil Samples	17
Animal Samples	4
Plant Samples	20
Total Samples	43

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11345]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11345]	Actinoplanes ianthinogenes gene for 16S rRNA, partial sequence	AB047495	1468	GenBank ENA	122358 tax ID
[Ref.: #20218]	Actinoplanes ianthinogenes partial 16S rRNA gene, strain IMSNU 20032	AJ277576	1444	GenBank ENA	122358 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoplanes ianthinogenes NBRC 13996	GCA_018324205	complete	GenBank ENA	122358 tax ID	*
[Ref.: #66792]	Actinoplanes ianthinogenes JCM 3249	GCA_014648375	scaffold	GenBank ENA	122358 tax ID	*
[Ref.: #66792]	Actinoplanes ianthinogenes strain JCM 3249	122358.3	wgs	PATRIC	122358 tax ID	*
[Ref.: #66792]	Actinoplanes ianthinogenes strain NBRC 13996	122358.4	complete	PATRIC	122358 tax ID	*

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GC-content

71.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes ianthinogenes NBRC 13996 NCBI: GCA_018324205.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes ianthinogenes NBRC 13996 NCBI: GCA_018324205.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.435	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.907	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.177	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	86.261	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.244	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	60.333	no

Availability in culture collections External links

[Ref.: #11345]

Culture collection no.

DSM 43864, ATCC 21884, BCRC 13611, IFO 13996, IMET 9253, IMSNU 20032, JCM 3249, KCTC 9347, KCTC 9592, NBRC 13996, NCIMB 12639, NRRL B-16720, PSA A 1668/18 V, BCC 49178, TBRC 170

[Ref.: #77259]

SI-ID 88616

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Descriptions of Actinoplanes ianthinogenes nom. rev. and Actinoplanes octamycinicus corrig. comb. nov., nom. rev.	Tamura T, Ishida Y, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.030130-0	2011	*

References

#11345

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43864

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77259

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88616.1 )

* These data were automatically processed and therefore are not curated

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Actinoplanes ianthinogenes NBRC 13996

Actinoplanes ianthinogenes NBRC 13996

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