Strain identifier
BacDive ID: 7817
Type strain: 
Species: Actinoplanes ianthinogenes
Strain Designation: A/1668/18V, A1668
Strain history: KCC A-0249 <-- SANK 60578 <-- ATCC 21884 <-- Lepetit A/1668.
NCBI tax ID(s): 122358 (species)
version 8.1 (current version)
General
@ref: 11345
BacDive-ID: 7817
DSM-Number: 43864
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, antibiotic compound production
description: Actinoplanes ianthinogenes A/1668/18V is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 122358
- Matching level: species
strain history
| @ref | history |
|---|---|
| 11345 | <- ATCC <- Lepetit Labs., A 1668/18V |
| 67770 | KCC A-0249 <-- SANK 60578 <-- ATCC 21884 <-- Lepetit A/1668. |
doi: 10.13145/bacdive7817.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinoplanes
- species: Actinoplanes ianthinogenes
- full scientific name: Actinoplanes ianthinogenes (ex Coronelli et al. 1974) Tamura et al. 2011
@ref: 11345
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinoplanes
species: Actinoplanes ianthinogenes
full scientific name: Actinoplanes ianthinogenes (ex Coronelli et al. 1974) Tamura et al. 2011
strain designation: A/1668/18V, A1668
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11345 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 11345 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11345 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 99 |
| 69480 | yes | 100 |
compound production
| @ref | compound |
|---|---|
| 11345 | purpuromycine |
| 67770 | Purpuromycin |
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 11345 | soil | Blumenau | Brazil | BRA | Middle and South America |
| 67770 | Soil | Blumenau | Brazil | BRA | Middle and South America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_127622.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_240;97_64171;98_85574;99_127622&stattab=map
- Last taxonomy: Actinoplanes ianthinogenes
- 16S sequence: AJ277576
- Sequence Identity:
- Total samples: 43
- soil counts: 17
- aquatic counts: 2
- animal counts: 4
- plant counts: 20
Safety information
risk assessment
- @ref: 11345
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Actinoplanes ianthinogenes partial 16S rRNA gene, strain IMSNU 20032 | AJ277576 | 1444 | ena | 122358 |
| 11345 | Actinoplanes ianthinogenes gene for 16S rRNA, partial sequence | AB047495 | 1468 | ena | 122358 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinoplanes ianthinogenes NBRC 13996 | GCA_018324205 | complete | ncbi | 122358 |
| 66792 | Actinoplanes ianthinogenes JCM 3249 | GCA_014648375 | scaffold | ncbi | 122358 |
| 66792 | Actinoplanes ianthinogenes strain JCM 3249 | 122358.3 | wgs | patric | 122358 |
| 66792 | Actinoplanes ianthinogenes strain NBRC 13996 | 122358.4 | complete | patric | 122358 |
GC content
- @ref: 11345
- GC-content: 71.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 99 | no |
| flagellated | no | 91.741 | no |
| gram-positive | yes | 89.467 | no |
| anaerobic | no | 98.99 | no |
| aerobic | yes | 94.443 | no |
| halophile | no | 95.213 | no |
| spore-forming | yes | 92.265 | no |
| thermophile | no | 99.167 | yes |
| glucose-util | yes | 90.724 | no |
| motile | yes | 59.371 | no |
| glucose-ferment | no | 88.361 | no |
External links
@ref: 11345
culture collection no.: DSM 43864, ATCC 21884, BCRC 13611, IFO 13996, IMET 9253, IMSNU 20032, JCM 3249, KCTC 9347, KCTC 9592, NBRC 13996, NCIMB 12639, NRRL B-16720, PSA A 1668/18 V, BCC 49178, TBRC 170
straininfo link
- @ref: 77259
- straininfo: 88616
literature
- topic: Phylogeny
- Pubmed-ID: 21257697
- title: Descriptions of Actinoplanes ianthinogenes nom. rev. and Actinoplanes octamycinicus corrig. comb. nov., nom. rev.
- authors: Tamura T, Ishida Y, Suzuki KI
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.030130-0
- year: 2011
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Micromonosporaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11345 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43864) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43864 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77259 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID88616.1 | StrainInfo: A central database for resolving microbial strain identifiers |