Name: Pseudolysinimonas kribbensis MSL-13
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7345

Type strain:

Species: Pseudolysinimonas kribbensis

Strain Designation: MSL-13

Culture col. no.: DSM 19272, JCM 16015, KACC 21108, KCTC 19267, NBRC 108894, MSL 13

Strain history: <- CJ Kim, KRIBB

NCBI tax ID(s): 433641 (species)

SI-ID 403872

DSM 19272

Special Collections

Section

Pseudolysinimonas kribbensis MSL-13 is an aerobe, Gram-positive, motile bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Pseudolysinimonas*
	Species	**Pseudolysinimonas kribbensis**
	Full Scientific Name (LPSN)	Pseudolysinimonas kribbensis (Dastager et al. 2009) Heo et al. 2019

	Synonym	Leifsonia kribbensis
	Synonym	Lysinimonas kribbensis

Information on morphological and physiological properties Morphology

[Ref.: #28931]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #28931]	Cell length	1.1 µm

[Ref.: #28931]	Cell width	0.95 µm

[Ref.: #28931]	Cell shape	rod-shaped

[Ref.: #28931]	Motility	yes

[Ref.: #28931]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7990]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7990]

Culture medium growth

[Ref.: #7990]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7990]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7990]	growth	28 °C
[Ref.: #28931]	growth	20-37 °C
[Ref.: #28931]	optimum	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #28931]			optimum	8
[Ref.: #28931]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28931]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #28931]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28931]		NaCl		growth	0-3	%
[Ref.: #28931]		NaCl		optimum	1.5	%

[Ref.: #67770]

Observation

quinones: MK-12, MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28931]	cellobiose ChEBI	+	carbon source
[Ref.: #28931]	mannitol ChEBI	+	carbon source
[Ref.: #28931]	melibiose ChEBI	+	carbon source
[Ref.: #28931]	myo-inositol ChEBI	+	carbon source
[Ref.: #28931]	raffinose ChEBI	+	carbon source
[Ref.: #28931]	rhamnose ChEBI	+	carbon source
[Ref.: #28931]	sucrose ChEBI	+	carbon source
[Ref.: #28931]	trehalose ChEBI	+	carbon source
[Ref.: #28931]	tween 80 ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7990]	Sample type/isolated from	soil
[Ref.: #7990]	Geographic location (country and/or sea, region)	Bigeum Island
[Ref.: #7990]	Country	Republic of Korea
[Ref.: #7990]	Country ISO 3 Code	KOR
[Ref.: #7990]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bigeum Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From farming field
[Ref.: #67771]	Geographic location (country and/or sea, region)	Bikeum island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7990]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7990]	Pseudolysinimonas kribbensis strain MSL-13 16S ribosomal RNA gene, partial sequence	EF466129	1483	GenBank ENA	433641 tax ID

[Ref.: #7990]

GC-content

73.4 mol%

Availability in culture collections External links

[Ref.: #7990]

Culture collection no.

DSM 19272, JCM 16015, KACC 21108, KCTC 19267, NBRC 108894, MSL 13

[Ref.: #76795]

SI-ID 403872

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Protaetiibacter larvae sp. nov. and Agromyces intestinalis sp. nov., isolated from the gut of larvae of Protaetia brevitarsis seulensis, reclassification of Lysinimonas yzui as Pseudolysinimonas yzui comb. nov. and emended description of the genus Pseudolysinimonas.	Lee SA, Heo J, Kim MA, Tamura T, Saitou S, Kwon SW, Weon HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004669	2021	*
Phylogeny	Lysinimonas yzui sp. nov., isolated from cattail root soil from mine tailings.	Mei L, Piao Z, Hu J, Shi L, Bai Y, Yin S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004013	2020	*
Phylogeny	Protaetiibacter intestinalis gen. nov., of the family Microbacteriaceae, isolated from gut of Protaetia brevitarsis seulensis, reclassification of Lysinimonas kribbensis Jang et al. 2013 as Pseudolysinimonas kribbensis gen. nov., comb. nov. and emended description of the genus Lysinimonas Jang et al. 2013.	Heo J, Cho H, Kim MA, Hamada M, Tamura T, Saitou S, Kim SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003444	2019	*
Phylogeny	Lysinimonas soli gen. nov., sp. nov., isolated from soil, and reclassification of Leifsonia kribbensis Dastager et al. 2009 as Lysinimonas kribbensis sp. nov., comb. nov.	Jang YH, Kim SJ, Tamura T, Hamada M, Weon HY, Suzuki KI, Kwon SW, Kim WG	Int J Syst Evol Microbiol	10.1099/ijs.0.042945-0	2012	*
Phylogeny	Leifsonia kribbensis sp. nov., isolated from soil.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.001925-0	2009	*

References

#7990

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19272

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28931

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25370 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#76795

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403872.1 )

#25370

IJSEM 18 2009 ( DOI 10.1099/ijs.0.001925-0 , PubMed 19126716 )

* These data were automatically processed and therefore are not curated

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