Name: Leifsonia soli TG-S248
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7346

Type strain:

Species: Leifsonia soli

Strain Designation: TG-S248

Culture col. no.: DSM 23871, JCM 15679, LMG 24767

Strain history: M. Madhaiyan TG-S248.

NCBI tax ID(s): 582665 (species)

SI-ID 358924

LMG 24767, JCM 15679

Special Collections

Other strains from Leifsonia soli

Section

Leifsonia soli TG-S248 is an aerobe, Gram-positive, motile bacterium that was isolated from rhizosphere soil of natural teak of field No. 37.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leifsonia*
	Species	**Leifsonia soli**
	Full Scientific Name (LPSN)	Leifsonia soli Madhaiyan et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29500]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.102

[Ref.: #29500]	Cell length	0.75 µm

[Ref.: #29500]	Cell width	0.45 µm

[Ref.: #29500]	Cell shape	rod-shaped

[Ref.: #29500]	Motility	yes

[Ref.: #21375]	Colony color	Ivory (1014)
[Ref.: #21375]	Incubation period	10-14 days
[Ref.: #21375]	Cultivation medium used	ISP 2

[Ref.: #21375]	Incubation period	10-14 days
[Ref.: #21375]	Cultivation medium used	ISP 5

[Ref.: #21375]	Incubation period	10-14 days
[Ref.: #21375]	Cultivation medium used	ISP 7

[Ref.: #21375]	Incubation period	10-14 days
[Ref.: #21375]	Cultivation medium used	Suter with tyrosine

[Ref.: #21375]	Incubation period	10-14 days
[Ref.: #21375]	Cultivation medium used	Suter without tyrosine

[Ref.: #29500]

Pigment production

yes

[Ref.: #21375]	Multicellular complex forming ability	no
[Ref.: #21375]	Medium Name (multicellularity)	ISP 2

[Ref.: #21375]	Multicellular complex forming ability	no
[Ref.: #21375]	Medium Name (multicellularity)	ISP 5

[Ref.: #21375]	Multicellular complex forming ability	no
[Ref.: #21375]	Medium Name (multicellularity)	ISP 7

[Ref.: #21375]	Multicellular complex forming ability	no
[Ref.: #21375]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21375]	Multicellular complex forming ability	no
[Ref.: #21375]	Medium Name (multicellularity)	Suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21375]

Culture medium

ISP 2

[Ref.: #21375]

Culture medium growth

[Ref.: #21375]

Culture medium composition

expand / minimize

[Ref.: #21375]

Culture medium

ISP 5

[Ref.: #21375]

Culture medium growth

[Ref.: #21375]

Culture medium composition

expand / minimize

[Ref.: #21375]

Culture medium

ISP 7

[Ref.: #21375]

Culture medium growth

[Ref.: #21375]

Culture medium composition

expand / minimize

[Ref.: #21375]

Culture medium

Suter with tyrosine

[Ref.: #21375]

Culture medium growth

[Ref.: #21375]

Culture medium composition

expand / minimize

[Ref.: #21375]

Culture medium

Suter without tyrosine

[Ref.: #21375]

Culture medium growth

[Ref.: #21375]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #29500]	growth	10-35 °C
[Ref.: #29500]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29500]			optimum	6.8
[Ref.: #29500]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29500]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #21375]		NaCl		maximum	10	%
[Ref.: #29500]		NaCl		growth	<2	%

[Ref.: #67770]

Observation

quinones: MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21375]	arabinose ChEBI	-
[Ref.: #29500]	arabinose ChEBI	+	carbon source
[Ref.: #29500]	cellobiose ChEBI	+	carbon source
[Ref.: #21375]	cellulose ChEBI	-
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #29500]	dextrin ChEBI	+	carbon source
[Ref.: #29500]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21375]	fructose ChEBI	-
[Ref.: #29500]	fructose ChEBI	+	carbon source
[Ref.: #29500]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #29500]	gluconate ChEBI	+	carbon source
[Ref.: #21375]	glucose ChEBI	-
[Ref.: #29500]	glucose ChEBI	+	carbon source
[Ref.: #29500]	glycerol ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #29500]	maltose ChEBI	+	carbon source
[Ref.: #29500]	mannitol ChEBI	+	carbon source
[Ref.: #21375]	mannose ChEBI	-
[Ref.: #29500]	mannose ChEBI	+	carbon source
[Ref.: #29500]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #21375]	myo-inositol ChEBI	-
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #21375]	raffinose ChEBI	-
[Ref.: #21375]	rhamnose ChEBI	-
[Ref.: #29500]	salicin ChEBI	+	carbon source
[Ref.: #29500]	sorbitol ChEBI	+	carbon source
[Ref.: #21375]	sucrose ChEBI	-
[Ref.: #29500]	sucrose ChEBI	+	carbon source
[Ref.: #29500]	trehalose ChEBI	+	carbon source
[Ref.: #29500]	tween 40 ChEBI	+	carbon source
[Ref.: #29500]	tween 80 ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21375]	xylose ChEBI	-
[Ref.: #29500]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #29500]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29500]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21375]	504	+	not determinedn.d.	-	-	-	-	-	+	+	-	+	not determinedn.d.	+	-	+	+	not determinedn.d.	+	not determinedn.d.	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21375]	1016	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17419]	Sample type/isolated from	rhizosphere soil of natural teak (Tectona grandis) of field No. 37
[Ref.: #17419]	Host species	Tectona grandis
[Ref.: #17419]	Geographic location (country and/or sea, region)	Coimbatore, Tamilnadu
[Ref.: #17419]	Country	India
[Ref.: #17419]	Country ISO 3 Code	IND
[Ref.: #17419]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of natural teak (Tectona grandis Linn.) from Field No. 37
[Ref.: #67770]	Host species	Tectona grandis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tamilnadu Agric. Univ., Coimbatore, Tamilnadu
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU912483 (>99% sequence identity) for Leifsonia from Microbeatlas

Aquatic Samples	554
Soil Samples	2218
Animal Samples	672
Plant Samples	396
Total Samples	3840

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17419]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17419]	Leifsonia soli strain TG-S248 16S ribosomal RNA gene, partial sequence	EU912483	1343	GenBank ENA	582665 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Leifsonia soli DSM 23871	GCA_013408745	contig	GenBank ENA	582665 tax ID
[Ref.: #66792]	Leifsonia soli strain DSM 23871	582665.3	wgs	PATRIC	582665 tax ID	*
[Ref.: #66792]	Leifsonia soli DSM 23871	2844841374	draft	JGI IMG/M	582665 tax ID	*

[Ref.: #17419]	GC-content	69.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29500]	GC-content	69.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leifsonia soli strain DSM 23871 PATRIC: 582665.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leifsonia soli strain DSM 23871 PATRIC: 582665.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.102	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.532	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	78.46	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.114	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.955	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	77	no

Availability in culture collections External links

[Ref.: #17419]

Culture collection no.

DSM 23871, JCM 15679, LMG 24767

[Ref.: #76796]

SI-ID 358924

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leifsonia soli sp. nov., a yellow-pigmented actinobacterium isolated from teak rhizosphere soil.	Madhaiyan M, Poonguzhali S, Lee JS, Senthilkumar M, Lee KC, Sundaram S	Int J Syst Evol Microbiol	10.1099/ijs.0.014373-0	2009	*

References

#17419

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23871

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21375

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29500

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25900 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76796

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID358924.1 )

#25900

IJSEM 1322 2010 ( DOI 10.1099/ijs.0.014373-0 , PubMed 19667370 )

* These data were automatically processed and therefore are not curated

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Leifsonia soli strain DSM 23871

Leifsonia soli strain DSM 23871

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