Microterricola pindariensis (DSM 22300, LMG 24222, MTCC 9128)

Name: Microterricola pindariensis (DSM 22300, LMG 24222, MTCC 9128)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7344

Type strain

Strain Designation PON10

Culture col. no. DSM 22300 LMG 24222 MTCC 9128 CCUG 55700 JCM 15132 2 more

NCBI tax ID(s) 478010

Special Collections DSMZ CCUG JCM KCTC Literature strains

History <- LMG; LMG 24222 <- G. S. N. Reddy, MTCC; PON10 S. Shivaji PON10.

Links

Microterricola pindariensis PON10 is an aerobe, Gram-positive, motile bacterium that was isolated from soil sample collected at an altitude of approximately 3500 m.

Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309050

LMG 24222,LMG 23939,JCM 15132,DSM 22300,CCUG 55700T

@ref 20215

Last LPSN update 2026-02-09 11:19:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microterricola

Species Microterricola pindariensis

Full scientific name Microterricola pindariensis (Reddy et al. 2008) Dhotre et al. 2017

Synonyms (1)

Leifsonia pindariensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
32573	positive	rod-shaped
43848	positive	rod-shaped

Pigmentation

32573

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth
43848	Trypticase soy agar

Culture temp

@ref	Growth	Type	Temperature (°C)
32573	positive	growth	04-35
32573	positive	optimum	28
43848	positive	growth	4-35
43848	positive	optimum	25
60698	positive	growth	30
67770	positive	growth	22

Culture pH

@ref	Ability	Type	PH
32573	positive	optimum	7
43848	positive	optimum	7
32573	positive	growth	7
43848	positive	growth	5.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32573	aerobe
43848	aerobe
60698	aerobe
125439	obligate aerobe	97.6

Spore formation

@ref	Spore formation	Confidence
32573
125439		95.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43848	NaCl	positive	growth	0-4 %

Observation

@ref	Observation
32573	aggregates in chains
67770	quinones: MK-11, MK-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43848	64552 ChEBI	2-hydroxybutyrate	-	carbon source
43848	73918 ChEBI	3-O-methyl-D-glucose	-	carbon source
43848	18101 ChEBI	4-hydroxyphenylacetic acid	+	carbon source
43848	17925 ChEBI	alpha-D-glucose	+	carbon source
43848	36219 ChEBI	alpha-lactose	-	carbon source
32573	29016 ChEBI	arginine	+	carbon source
32573	22653 ChEBI	asparagine	+	carbon source
43848	16947 ChEBI	citrate	-	carbon source
43848	18333 ChEBI	D-arabitol	-	carbon source
43848	15824 ChEBI	D-fructose	+	carbon source
43848	78697 ChEBI	D-fructose 6-phosphate	-	carbon source
43848	12936 ChEBI	D-galactose	+	carbon source
43848	8391 ChEBI	D-gluconate	+	carbon source
43848	15748 ChEBI	D-glucuronate	+	carbon source
43848	16899 ChEBI	D-mannitol	-	carbon source
43848	17924 ChEBI	D-sorbitol	-	carbon source
32573	4853 ChEBI	esculin	+	hydrolysis
43848	28066 ChEBI	gentiobiose	-	carbon source
32573	17234 ChEBI	glucose	+	carbon source
32573	32323 ChEBI	glucuronamide	+	carbon source
32573	17754 ChEBI	glycerol	+	carbon source
43848	17754 ChEBI	glycerol	+	carbon source
43848	70744 ChEBI	glycine-proline	+	carbon source
43848	17596 ChEBI	inosine	+	carbon source
43848		L-alanine	-	carbon source
43848	16467 ChEBI	L-arginine	+	carbon source
43848	18287 ChEBI	L-fucose	-	carbon source
43848	29985 ChEBI	L-glutamate	-	carbon source
43848	15971 ChEBI	L-histidine	-	carbon source
43848	62345 ChEBI	L-rhamnose	-	carbon source
43848	17115 ChEBI	L-serine	-	carbon source
32573	17716 ChEBI	lactose	+	carbon source
32573	17306 ChEBI	maltose	+	carbon source
43848	17306 ChEBI	maltose	+	carbon source
32573	37684 ChEBI	mannose	+	carbon source
32573	28053 ChEBI	melibiose	+	carbon source
43848	28053 ChEBI	melibiose	-	carbon source
43848	74611 ChEBI	methyl (R)-lactate	+	carbon source
43848	320055 ChEBI	methyl beta-D-glucopyranoside	-	carbon source
43848	17268 ChEBI	myo-inositol	-	carbon source
43848	28037 ChEBI	N-acetylgalactosamine	+	carbon source
43848	506227 ChEBI	N-acetylglucosamine	-	carbon source
43848	35418 ChEBI	n-acetylneuraminate	-	carbon source
43848	17309 ChEBI	pectin	+	carbon source
43848	17272 ChEBI	propionate	+	carbon source
32573	33942 ChEBI	ribose	+	carbon source
32573	17814 ChEBI	salicin	+	carbon source
43848	17992 ChEBI	sucrose	-	carbon source
43848	27082 ChEBI	trehalose	+	carbon source
43848	32528 ChEBI	turanose	+	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite
43848		1 % sodium lactate
43848	32735	guanidinium chloride
43848	6472	lincomycin
43848	48607	lithium chloride
43848	50694	minocycline
43848	75248	potassium tellurite
43848	29673	rifamycin sv
43848	75229	sodium bromate
43848	64103	sodium butyrate
43848	45735	troleandomycin

Enzymes

@ref	Value	Activity	Ec
32573	catalase	+	1.11.1.6
43848	cytochrome oxidase	-	1.9.3.1
32573	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

43848

Fatty acid	Percentage
C15:0 anteiso	62.7
C17:0 anteiso	19.6
C16:0 iso	9.5
C16:0	3.3
C15:0 iso	2.4
C17:0	0.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Glacier

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16263	soil sample collected at an altitude of approximately 3500 m	Indian Himalayas, Pindari glacier	India	IND	Asia
43848	Pindari glacier of Indian Himalayas	Pindari glacier, Himalaya	India	IND	Asia
60698	Glacier	Himalayan ranges,Pindari	India	IND	Asia
67770	Soil at an altitude of approximately 3,500 m near the Pindari glacier of the Indian Himalayas	Himalaya	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM900767 (>99% sequence identity) for Microterricola from Microbeatlas

Aquatic Samples	3680
Soil Samples	6929
Animal Samples	3725
Plant Samples	3868
Total Samples	18202

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16263	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM293698v1 assembly for Microterricola pindariensis PON 10	contig	GCA_002936985	478010.4	2795385486	478010	49.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16263	Leifsonia pindariensis partial 16S rRNA gene, type strain PON10T	AM900767	1492		478010

GC content

@ref	GC-content (mol%)	Method
32573	66-73
43848	62.2	fluorimetric
67770	62.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microterricola pindariensis PON 10
NCBI: GCA_002936985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.20	no
125439	motility	BacteriaNetⓘ	yes	59.20	no
125439	gram_stain	BacteriaNetⓘ	positive	83.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leifsonia pindariensis strain PON 10
PATRIC: 478010.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.96	yes
125438	anaerobic	anaerobicⓘ	no	97.91	yes
125438	spore-forming	spore-formingⓘ	no	76.37	no
125438	aerobic	aerobicⓘ	yes	83.92	yes
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	78.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Phycicola gilvus (Lee et al. 2008) and Leifsonia pindariensis (Reddy et al. 2008) as Microterricola gilva comb. nov. and Microterricola pindariensis comb. nov. and emended description of the genus Microterricola.	Dhotre DP, Rajabal V, Sharma A, Kulkarni GJ, Prakash O, Vemuluri VR, Joseph N, Rahi P, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002019	2017
Phylogeny	Leifsonia psychrotolerans sp. nov., a psychrotolerant species of the family Microbacteriaceae from Livingston Island, Antarctica.	Ganzert L, Bajerski F, Mangelsdorf K, Lipski A, Wagner D	Int J Syst Evol Microbiol	10.1099/ijs.0.021956-0	2010
Phylogeny	Description of Leifsonia kafniensis sp. nov. and Leifsonia antarctica sp. nov.	Pindi PK, Kishore KH, Reddy GS, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.006643-0	2009
Phylogeny	Leifsonia pindariensis sp. nov., isolated from the Pindari glacier of the Indian Himalayas, and emended description of the genus Leifsonia.	Reddy GS, Prabagaran SR, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.65715-0	2008

References

#16263	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22300
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28788	IJSEM 2229 2008 ( DOI 10.1099/ijs.0.65715-0 , PubMed 18768634 )
#32573	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28788
#43848	Dhiraj Prakash Dhotre, Vaheesan Rajabal, Avinash Sharma, Girish J. Kulkarni, Om Prakash, Venkata Ramana Vemuluri, Neetha Joseph, Praveen Rahi, Yogesh S. Shouche: Reclassification of Phycicola gilvus (Lee et al. 2008) and Leifsonia pindariensis (Reddy et al. 2008) as Microterricola gilva comb. nov. and Microterricola pindariensis comb. nov. and emended description of the genus Microterricola. IJSEM 67: 2766 - 2772 2017 ( DOI 10.1099/ijsem.0.002019 , PubMed 28857730 )
#60698	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55700
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Microterricola pindariensis (DSM 22300, LMG 24222, MTCC 9128)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002936985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media