Name: Microterricola pindariensis PON10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7344

Type strain:

Species: Microterricola pindariensis

Strain Designation: PON10

Culture col. no.: DSM 22300, LMG 24222, MTCC 9128, CCUG 55700, JCM 15132, KCTC 19685

Strain history: S. Shivaji PON10.

NCBI tax ID(s): 478010 (species)

SI-ID 309050

LMG 24222, LMG 23939, JCM 15132, DSM 22300

Section

Microterricola pindariensis PON10 is an aerobe, Gram-positive, motile bacterium that was isolated from soil sample collected at an altitude of approximately 3500 m.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microterricola*
	Species	**Microterricola pindariensis**
	Full Scientific Name (LPSN)	Microterricola pindariensis (Reddy et al. 2008) Dhotre et al. 2017

Synonym

Leifsonia pindariensis

Information on morphological and physiological properties Morphology

[Ref.: #32573]	Gram stain	positive
[Ref.: #43848]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32573]	Cell shape	rod-shaped
[Ref.: #43848]	Cell shape	rod-shaped

[Ref.: #32573]	Motility	yes
[Ref.: #43848]	Motility	yes

[Ref.: #32573]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43848]

Culture medium

Trypticase soy agar

[Ref.: #43848]

Culture medium growth

		Temperature
[Ref.: #32573]	growth	04-35 °C
[Ref.: #32573]	optimum	28 °C
[Ref.: #43848]	growth	4-35 °C
[Ref.: #43848]	optimum	25 °C
[Ref.: #60698]	growth	30 °C
[Ref.: #67770]	growth	22 °C

[Ref.: #32573]	Temperature range	mesophilic
[Ref.: #43848]	Temperature range	mesophilic
[Ref.: #60698]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	psychrophilic

		pH
[Ref.: #32573]	optimum	7
[Ref.: #43848]	optimum	7
[Ref.: #32573]	growth	7
[Ref.: #43848]	growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32573]	Oxygen tolerance	aerobe
[Ref.: #43848]	Oxygen tolerance	aerobe
[Ref.: #60698]	Oxygen tolerance	aerobe

[Ref.: #32573]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43848]		NaCl		growth	0-4	%

[Ref.: #32573]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-11, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43848]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #43848]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #43848]	4-hydroxyphenylacetic acid ChEBI	+	carbon source
[Ref.: #43848]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43848]	alpha-lactose ChEBI	-	carbon source
[Ref.: #32573]	arginine ChEBI	+	carbon source
[Ref.: #32573]	asparagine ChEBI	+	carbon source
[Ref.: #43848]	citrate ChEBI	-	carbon source
[Ref.: #43848]	D-arabitol ChEBI	-	carbon source
[Ref.: #43848]	D-fructose ChEBI	+	carbon source
[Ref.: #43848]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #43848]	D-galactose ChEBI	+	carbon source
[Ref.: #43848]	D-gluconate ChEBI	+	carbon source
[Ref.: #43848]	D-glucuronate ChEBI	+	carbon source
[Ref.: #43848]	D-mannitol ChEBI	-	carbon source
[Ref.: #43848]	D-sorbitol ChEBI	-	carbon source
[Ref.: #32573]	esculin ChEBI	+	hydrolysis
[Ref.: #43848]	gentiobiose ChEBI	-	carbon source
[Ref.: #32573]	glucose ChEBI	+	carbon source
[Ref.: #32573]	glucuronamide ChEBI	+	carbon source
[Ref.: #32573]	glycerol ChEBI	+	carbon source
[Ref.: #43848]	glycerol ChEBI	+	carbon source
[Ref.: #43848]	glycine-proline ChEBI	+	carbon source
[Ref.: #43848]	inosine ChEBI	+	carbon source
[Ref.: #43848]	L-alanine	-	carbon source
[Ref.: #43848]	L-arginine ChEBI	+	carbon source
[Ref.: #43848]	L-fucose ChEBI	-	carbon source
[Ref.: #43848]	L-glutamate ChEBI	-	carbon source
[Ref.: #43848]	L-histidine ChEBI	-	carbon source
[Ref.: #43848]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43848]	L-serine ChEBI	-	carbon source
[Ref.: #32573]	lactose ChEBI	+	carbon source
[Ref.: #32573]	maltose ChEBI	+	carbon source
[Ref.: #43848]	maltose ChEBI	+	carbon source
[Ref.: #32573]	mannose ChEBI	+	carbon source
[Ref.: #32573]	melibiose ChEBI	+	carbon source
[Ref.: #43848]	melibiose ChEBI	-	carbon source
[Ref.: #43848]	methyl (R)-lactate ChEBI	+	carbon source
[Ref.: #43848]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #43848]	myo-inositol ChEBI	-	carbon source
[Ref.: #43848]	N-acetylgalactosamine ChEBI	+	carbon source
[Ref.: #43848]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43848]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #43848]	pectin ChEBI	+	carbon source
[Ref.: #43848]	propionate ChEBI	+	carbon source
[Ref.: #32573]	ribose ChEBI	+	carbon source
[Ref.: #32573]	salicin ChEBI	+	carbon source
[Ref.: #43848]	sucrose ChEBI	-	carbon source
[Ref.: #43848]	trehalose ChEBI	+	carbon source
[Ref.: #43848]	turanose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43848]	1 % sodium lactate		yes
[Ref.: #43848]	guanidinium chloride ChEBI	yes
[Ref.: #43848]	lincomycin ChEBI	yes
[Ref.: #43848]	lithium chloride ChEBI	yes
[Ref.: #43848]	minocycline ChEBI	yes
[Ref.: #43848]	potassium tellurite ChEBI	yes
[Ref.: #43848]	rifamycin sv ChEBI	yes
[Ref.: #43848]	sodium bromate ChEBI	yes
[Ref.: #43848]	sodium butyrate ChEBI	yes
[Ref.: #43848]	troleandomycin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #32573]	catalase	+	1.11.1.6
[Ref.: #43848]	cytochrome oxidase	-	1.9.3.1
[Ref.: #32573]	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43848]

Fatty acid	Percentage
C15:0 anteiso	62.7
C17:0 anteiso	19.6
C16:0 iso	9.5
C16:0	3.3
C15:0 iso	2.4
C17:0	0.8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16263]	Sample type/isolated from	soil sample collected at an altitude of approximately 3500 m
[Ref.: #16263]	Geographic location (country and/or sea, region)	Indian Himalayas, Pindari glacier
[Ref.: #16263]	Country	India
[Ref.: #16263]	Country ISO 3 Code	IND
[Ref.: #16263]	Continent	Asia

[Ref.: #43848]	Sample type/isolated from	Pindari glacier of Indian Himalayas
[Ref.: #43848]	Geographic location (country and/or sea, region)	Pindari glacier, Himalaya
[Ref.: #43848]	Country	India
[Ref.: #43848]	Country ISO 3 Code	IND
[Ref.: #43848]	Continent	Asia

[Ref.: #60698]	Sample type/isolated from	Glacier
[Ref.: #60698]	Geographic location (country and/or sea, region)	Himalayan ranges,Pindari
[Ref.: #60698]	Country	India
[Ref.: #60698]	Country ISO 3 Code	IND
[Ref.: #60698]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil at an altitude of approximately 3,500 m near the Pindari glacier of the Indian Himalayas
[Ref.: #67770]	Geographic location (country and/or sea, region)	Himalaya
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Glacier

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM900767 (>99% sequence identity) for Microterricola from Microbeatlas

Aquatic Samples	3680
Soil Samples	6929
Animal Samples	3725
Plant Samples	3868
Total Samples	18202

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16263]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16263]	Leifsonia pindariensis partial 16S rRNA gene, type strain PON10T	AM900767	1492	ENA	478010 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microterricola pindariensis PON 10	GCA_002936985	contig	GenBank	478010 tax ID
[Ref.: #66792]	Leifsonia pindariensis strain PON 10	478010.4	wgs	PATRIC	478010 tax ID	*

[Ref.: #32573]	GC-content	66-73 mol%
[Ref.: #43848]	GC-content	62.2 mol%	fluorimetric
[Ref.: #67770]	GC-content	62.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leifsonia pindariensis strain PON 10 PATRIC: 478010.4
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leifsonia pindariensis strain PON 10 PATRIC: 478010.4
[Ref.: #69480]	gram-positive	yes	91.318	yes
[Ref.: #69480]	anaerobic	no	99.281	yes
[Ref.: #69480]	halophile	no	90.241	no
[Ref.: #69480]	spore-forming	no	92.318	no
[Ref.: #69480]	glucose-util	yes	84.887	no
[Ref.: #69480]	aerobic	yes	93.927	yes
[Ref.: #69480]	flagellated	no	91.4	no
[Ref.: #69480]	thermophile	no	99.516	no
[Ref.: #69480]	motile	yes	76.77	yes
[Ref.: #69480]	glucose-ferment	no	80.853	no

Availability in culture collections External links

[Ref.: #16263]

Culture collection no.

DSM 22300, LMG 24222, MTCC 9128, CCUG 55700, JCM 15132, KCTC 19685

[Ref.: #76794]

SI-ID 309050

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Phycicola gilvus (Lee et al. 2008) and Leifsonia pindariensis (Reddy et al. 2008) as Microterricola gilva comb. nov. and Microterricola pindariensis comb. nov. and emended description of the genus Microterricola.	Dhotre DP, Rajabal V, Sharma A, Kulkarni GJ, Prakash O, Vemuluri VR, Joseph N, Rahi P, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002019	2017	*
Phylogeny	Leifsonia psychrotolerans sp. nov., a psychrotolerant species of the family Microbacteriaceae from Livingston Island, Antarctica.	Ganzert L, Bajerski F, Mangelsdorf K, Lipski A, Wagner D	Int J Syst Evol Microbiol	10.1099/ijs.0.021956-0	2010	*
Phylogeny	Description of Leifsonia kafniensis sp. nov. and Leifsonia antarctica sp. nov.	Pindi PK, Kishore KH, Reddy GS, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.006643-0	2009	*
Phylogeny	Leifsonia pindariensis sp. nov., isolated from the Pindari glacier of the Indian Himalayas, and emended description of the genus Leifsonia.	Reddy GS, Prabagaran SR, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.65715-0	2008	*

References

#16263

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22300

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32573

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28788 (see below)

#43848

Dhiraj Prakash Dhotre, Vaheesan Rajabal, Avinash Sharma, Girish J. Kulkarni, Om Prakash, Venkata Ramana Vemuluri, Neetha Joseph, Praveen Rahi, Yogesh S. Shouche: Reclassification of Phycicola gilvus (Lee et al. 2008) and Leifsonia pindariensis (Reddy et al. 2008) as Microterricola gilva comb. nov. and Microterricola pindariensis comb. nov. and emended description of the genus Microterricola. IJSEM 67: 2766 - 2772 2017 ( DOI 10.1099/ijsem.0.002019 , PubMed 28857730 )

#60698 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55700

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76794

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309050.1 )

#28788

IJSEM 2229 2008 ( DOI 10.1099/ijs.0.65715-0 , PubMed 18768634 )

* These data were automatically processed and therefore are not curated

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Leifsonia pindariensis strain PON 10

Leifsonia pindariensis strain PON 10

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