Strain identifier

BacDive ID: 7345

Type strain: Yes

Species: Pseudolysinimonas kribbensis

Strain Designation: MSL-13

Strain history: <- CJ Kim, KRIBB

NCBI tax ID(s): 433641 (species)

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General

@ref: 7990

BacDive-ID: 7345

DSM-Number: 19272

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, motile, rod-shaped

description: Pseudolysinimonas kribbensis MSL-13 is an aerobe, Gram-positive, motile bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 433641
  • Matching level: species

strain history

@refhistory
7990<- C.-J. Kim <- S. G. Dastager <- Y. J. Ju, KRIBB; MSL-13
67770KCTC 19267 <-- C.-J. Kim MSL-13.
67771<- CJ Kim, KRIBB

doi: 10.13145/bacdive7345.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Pseudolysinimonas
  • species: Pseudolysinimonas kribbensis
  • full scientific name: Pseudolysinimonas kribbensis (Dastager et al. 2009) Heo et al. 2019

  • synonyms

    @refsynonym
    20215Leifsonia kribbensis
    20215Lysinimonas kribbensis

@ref: 7990

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Pseudolysinimonas

species: Pseudolysinimonas kribbensis

full scientific name: Pseudolysinimonas kribbensis Heo et al. 2019

strain designation: MSL-13

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
28931positive1.1 µm0.95 µmrod-shapedyes
67771positive

pigmentation

  • @ref: 28931
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7990
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperature
7990positivegrowth28
28931positivegrowth20-37
28931positiveoptimum28
67770positivegrowth28
67771positivegrowth30

culture pH

@refabilitytypepHPH range
28931positivegrowth06-11alkaliphile
28931positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
28931aerobe
67771aerobe

spore formation

  • @ref: 28931
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
28931NaClpositivegrowth0-3 %
28931NaClpositiveoptimum1.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-12, MK-11

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2893117057cellobiose+carbon source
2893129864mannitol+carbon source
2893128053melibiose+carbon source
2893117268myo-inositol+carbon source
2893116634raffinose+carbon source
2893126546rhamnose+carbon source
2893117992sucrose+carbon source
2893127082trehalose+carbon source
2893153426tween 80+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7990soilBigeum IslandRepublic of KoreaKORAsia
67770SoilBigeum IslandRepublic of KoreaKORAsia
67771From farming fieldBikeum islandRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 7990
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7990
  • description: Pseudolysinimonas kribbensis strain MSL-13 16S ribosomal RNA gene, partial sequence
  • accession: EF466129
  • length: 1483
  • database: nuccore
  • NCBI tax ID: 433641

GC content

  • @ref: 7990
  • GC-content: 73.4

External links

@ref: 7990

culture collection no.: DSM 19272, JCM 16015, KACC 21108, KCTC 19267, NBRC 108894, MSL 13

straininfo link

  • @ref: 76795
  • straininfo: 403872

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19126716Leifsonia kribbensis sp. nov., isolated from soil.Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.001925-02009Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Genotype, Korea, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityGenetics
Phylogeny22821735Lysinimonas soli gen. nov., sp. nov., isolated from soil, and reclassification of Leifsonia kribbensis Dastager et al. 2009 as Lysinimonas kribbensis sp. nov., comb. nov.Jang YH, Kim SJ, Tamura T, Hamada M, Weon HY, Suzuki KI, Kwon SW, Kim WGInt J Syst Evol Microbiol10.1099/ijs.0.042945-02012Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysisGenetics
Phylogeny31099733Protaetiibacter intestinalis gen. nov., of the family Microbacteriaceae, isolated from gut of Protaetia brevitarsis seulensis, reclassification of Lysinimonas kribbensis Jang et al. 2013 as Pseudolysinimonas kribbensis gen. nov., comb. nov. and emended description of the genus Lysinimonas Jang et al. 2013.Heo J, Cho H, Kim MA, Hamada M, Tamura T, Saitou S, Kim SJ, Kwon SWInt J Syst Evol Microbiol10.1099/ijsem.0.0034442019Actinobacteria/*classification, Animals, Bacterial Typing Techniques, Base Composition, Coleoptera/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Glycolipids/chemistry, Larva/microbiology, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome
Phylogeny32234114Lysinimonas yzui sp. nov., isolated from cattail root soil from mine tailings.Mei L, Piao Z, Hu J, Shi L, Bai Y, Yin SInt J Syst Evol Microbiol10.1099/ijsem.0.0040132020Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, Peptidoglycan/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Typhaceae/*microbiology, Vitamin K 2/chemistryTranscriptome
Phylogeny33913805Protaetiibacter larvae sp. nov. and Agromyces intestinalis sp. nov., isolated from the gut of larvae of Protaetia brevitarsis seulensis, reclassification of Lysinimonas yzui as Pseudolysinimonas yzui comb. nov. and emended description of the genus Pseudolysinimonas.Lee SA, Heo J, Kim MA, Tamura T, Saitou S, Kwon SW, Weon HYInt J Syst Evol Microbiol10.1099/ijsem.0.0046692021Actinobacteria/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Coleoptera/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Glycolipids/chemistry, Larva/microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7990Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19272)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19272
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
28931Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2537028776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
76795Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403872.1StrainInfo: A central database for resolving microbial strain identifiers