Kushneria marisflavi SW32 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from water sample.
Gram-negative motile rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Oceanospirillales |
| Family Halomonadaceae |
| Genus Kushneria |
| Species Kushneria marisflavi |
| Full scientific name Kushneria marisflavi (Yoon et al. 2001) Sánchez-Porro et al. 2009 |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5872 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 40649 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 120831 | CIP Medium 72 | Medium recipe at CIP |
| 120831 | Oxygen toleranceobligate aerobe |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.1 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 120831 | NaCl | positive | growth | 0-10 % |
| 67770 | Observationquinones: Q-9 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 120831 | 16947 ChEBI | citrate | + | carbon source | |
| 120831 | 15824 ChEBI | D-fructose | - | degradation | |
| 120831 | 17634 ChEBI | D-glucose | - | degradation | |
| 120831 | 4853 ChEBI | esculin | + | hydrolysis | |
| 120831 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 120831 | 17716 ChEBI | lactose | - | degradation | |
| 120831 | 15792 ChEBI | malonate | - | assimilation | |
| 120831 | 17306 ChEBI | maltose | - | degradation | |
| 120831 | 17632 ChEBI | nitrate | - | reduction | |
| 120831 | 17632 ChEBI | nitrate | - | respiration | |
| 120831 | 16301 ChEBI | nitrite | - | reduction |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 120831 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 120831 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 120831 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120831 | caseinase | - | 3.4.21.50 | |
| 120831 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 120831 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 120831 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 120831 | gelatinase | - | ||
| 120831 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 120831 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 120831 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120831 | ornithine decarboxylase | - | 4.1.1.17 | |
| 120831 | oxidase | - | ||
| 120831 | phenylalanine ammonia-lyase | + | 4.3.1.24 | |
| 120831 | protease | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 120831 | tryptophan deaminase | - | ||
| 120831 | tween esterase | - | ||
| 120831 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | cyanate degradation | 100 | 3 of 3 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | quinate degradation | 100 | 2 of 2 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | Entner Doudoroff pathway | 100 | 10 of 10 | ||
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | lactate fermentation | 100 | 4 of 4 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | tetrahydrofolate metabolism | 100 | 14 of 14 | ||
| 66794 | isoleucine metabolism | 100 | 8 of 8 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | teichoic acid biosynthesis | 100 | 1 of 1 | ||
| 66794 | ubiquinone biosynthesis | 100 | 7 of 7 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | photosynthesis | 92.86 | 13 of 14 | ||
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | ||
| 66794 | vitamin B12 metabolism | 91.18 | 31 of 34 | ||
| 66794 | vitamin B6 metabolism | 90.91 | 10 of 11 | ||
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | ketogluconate metabolism | 87.5 | 7 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | glutamate and glutamine metabolism | 85.71 | 24 of 28 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | glycolate and glyoxylate degradation | 83.33 | 5 of 6 | ||
| 66794 | metabolism of disaccharids | 81.82 | 9 of 11 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | flavin biosynthesis | 80 | 12 of 15 | ||
| 66794 | gallate degradation | 80 | 4 of 5 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | glutathione metabolism | 78.57 | 11 of 14 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | allantoin degradation | 77.78 | 7 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | NAD metabolism | 77.78 | 14 of 18 | ||
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | ||
| 66794 | leucine metabolism | 76.92 | 10 of 13 | ||
| 66794 | glycolysis | 76.47 | 13 of 17 | ||
| 66794 | degradation of sugar acids | 76 | 19 of 25 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | arginine metabolism | 75 | 18 of 24 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | proline metabolism | 72.73 | 8 of 11 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | citric acid cycle | 71.43 | 10 of 14 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | non-pathway related | 71.05 | 27 of 38 | ||
| 66794 | purine metabolism | 70.21 | 66 of 94 | ||
| 66794 | urea cycle | 69.23 | 9 of 13 | ||
| 66794 | pyrimidine metabolism | 68.89 | 31 of 45 | ||
| 66794 | degradation of sugar alcohols | 68.75 | 11 of 16 | ||
| 66794 | 4-hydroxymandelate degradation | 66.67 | 6 of 9 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | lysine metabolism | 66.67 | 28 of 42 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | sulfoquinovose degradation | 66.67 | 2 of 3 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | isoprenoid biosynthesis | 65.38 | 17 of 26 | ||
| 66794 | oxidative phosphorylation | 64.84 | 59 of 91 | ||
| 66794 | tryptophan metabolism | 63.16 | 24 of 38 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | alanine metabolism | 62.07 | 18 of 29 | ||
| 66794 | lipid metabolism | 61.29 | 19 of 31 | ||
| 66794 | polyamine pathway | 60.87 | 14 of 23 | ||
| 66794 | degradation of pentoses | 60.71 | 17 of 28 | ||
| 66794 | vitamin K metabolism | 60 | 3 of 5 | ||
| 66794 | propionate fermentation | 60 | 6 of 10 | ||
| 66794 | creatinine degradation | 60 | 3 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | ||
| 66794 | histidine metabolism | 58.62 | 17 of 29 | ||
| 66794 | methionine metabolism | 57.69 | 15 of 26 | ||
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | ||
| 66794 | arachidonic acid metabolism | 55.56 | 10 of 18 | ||
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | ||
| 66794 | d-xylose degradation | 54.55 | 6 of 11 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | phenol degradation | 50 | 10 of 20 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | degradation of hexoses | 50 | 9 of 18 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 46.15 | 6 of 13 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | ascorbate metabolism | 45.45 | 10 of 22 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | ||
| 66794 | hydrogen production | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | 3-phenylpropionate degradation | 40 | 6 of 15 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 40 | 4 of 10 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | factor 420 biosynthesis | 40 | 2 of 5 | ||
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | carotenoid biosynthesis | 36.36 | 8 of 22 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 | ||
| 66794 | carnitine metabolism | 25 | 2 of 8 | ||
| 66794 | butanoate fermentation | 25 | 1 of 4 |
Global distribution of 16S sequence AF251143 (>99% sequence identity) for Kushneria from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM215720v1 assembly for Kushneria marisflavi SW32 | complete | 157779 | 99.11 | ||||
| 67770 | ASM361051v1 assembly for Kushneria marisflavi DSM 15357 | scaffold | 157779 | 76.1 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 5872 | Halomonas marisflava 16S ribosomal RNA gene, partial sequence | AF251143 | 1495 | 157779 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 5872 | 59 | high performance liquid chromatography (HPLC) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.10 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 86.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 81.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.83 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 87.32 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 87.37 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.79 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.62 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Complete genome sequence of the halophile bacterium Kushneria marisflavi KCCM 80003(T), isolated from seawater in Korea. | Yun JH, Bae JW | Mar Genomics | 10.1016/j.margen.2017.11.002 | 2017 | |
| Phylogeny | Kushneria phyllosphaerae sp. nov. and Kushneria endophytica sp. nov., plant growth promoting endophytes isolated from the halophyte plant Arthrocnemum macrostachyum. | Navarro-Torre S, Carro L, Rodriguez-Llorente ID, Pajuelo E, Caviedes MA, Igual JM, Redondo-Gomez S, Camacho M, Klenk HP, Montero-Calasanz MDC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002897 | 2018 | |
| Phylogeny | Description of Kushneria aurantia gen. nov., sp. nov., a novel member of the family Halomonadaceae, and a proposal for reclassification of Halomonas marisflavi as Kushneria marisflavi comb. nov., of Halomonas indalinina as Kushneria indalinina comb. nov. and of Halomonas avicenniae as Kushneria avicenniae comb. nov. | Sanchez-Porro C, de la Haba RR, Soto-Ramirez N, Marquez MC, Montalvo-Rodriguez R, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.001461-0 | 2009 | |
| Phylogeny | Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea. | Yoon JH, Choi SH, Lee KC, Kho YH, Kang KH, Park YH | Int J Syst Evol Microbiol | 10.1099/00207713-51-3-1171 | 2001 |
| #5872 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15357 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #40649 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120831 | Collection of Institut Pasteur ; Curators of the CIP; CIP 107103 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive6082.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data