Name: Salinicola socius SMB35
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6081

Type strain:

Species: Salinicola socius

Strain Designation: SMB35

Culture col. no.: DSM 19940, VKM B-2397, UCCCB107

Strain history: Emendations: de la Haba et al. 2010 de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A. Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and S

NCBI tax ID(s): 404433 (species)

SI-ID 360154

DSM 19940, VKM B-2397

Special Collections

DSMZ
UCCCB

Section

Salinicola socius SMB35 is a motile bacterium that was isolated from soil of salt mines.

motile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola socius**
	Full Scientific Name (LPSN)	Salinicola socius Anan'ina et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.969

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8398]

Culture medium

SMB MEDIUM (DSMZ Medium 1185)

[Ref.: #8398]

Culture medium growth

[Ref.: #8398]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8398]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8398]	growth	28 °C
[Ref.: #67772]	optimum	30-37 °C
[Ref.: #67772]	minimum	4 °C
[Ref.: #67772]	maximum	45 °C

	pH	Kind of pH		pH
[Ref.: #67772]			maximum	8.0
[Ref.: #67772]			minimum	6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8398]	Sample type/isolated from	soil of salt mines
[Ref.: #8398]	Geographic location (country and/or sea, region)	Perm region, Berezniki
[Ref.: #8398]	Country	Russia
[Ref.: #8398]	Country ISO 3 Code	RUS
[Ref.: #8398]	Continent	Europe

[Ref.: #67772]	Sample type/isolated from	Soil of salt mines
[Ref.: #67772]	Sampling date	2001
[Ref.: #67772]	Geographic location (country and/or sea, region)	Perm Krai, Berezniki
[Ref.: #67772]	Country	Russia
[Ref.: #67772]	Country ISO 3 Code	RUS
[Ref.: #67772]	Continent	Europe
[Ref.: #67772]	Geographic location	59.4167°/56.7833°
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ979342 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	98
Soil Samples	47
Animal Samples	71
Plant Samples	4
Total Samples	220

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8398]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8398]	Salinicola socius strain SMB35 16S ribosomal RNA gene, partial sequence	DQ979342	1433	GenBank ENA	404433 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola socius SMB35	GCA_001937195	contig	GenBank ENA	404433 tax ID
[Ref.: #66792]	Salinicola socius DSM 19940	GCA_003206115	scaffold	GenBank ENA	404433 tax ID	*
[Ref.: #66792]	Salinicola socius strain DSM 19940	404433.6	wgs	PATRIC	404433 tax ID	*
[Ref.: #66792]	Salinicola socius DSM 19940	2894301683	draft	JGI IMG/M	404433 tax ID	*

[Ref.: #8398]

GC-content

63.0 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinicola socius DSM 19940 NCBI: GCA_003206115.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicola socius DSM 19940 NCBI: GCA_003206115.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.969	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	99.041	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.256	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.082	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.478	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.208	no

Availability in culture collections External links

[Ref.: #8398]

Culture collection no.

DSM 19940, VKM B-2397, UCCCB107

[Ref.: #75568]

SI-ID 360154

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequences of strains Salinicola socius SMB35(T), Salinicola sp. MH3R3-1 and Chromohalobacter sp. SMB17 from the Verkhnekamsk potash mining region of Russia.	Olsson BE, Korsakova ES, Anan'ina LN, Pyankova AA, Mavrodi OV, Plotnikova EG, Mavrodi DV	Stand Genomic Sci	10.1186/s40793-017-0251-5	2017	*
Phylogeny	Comparative 16S rRNA signatures and multilocus sequence analysis for the genus Salinicola and description of Salinicola acroporae sp. nov., isolated from coral Acropora digitifera.	Lepcha RT, Poddar A, Schumann P, Das SK	Antonie Van Leeuwenhoek	10.1007/s10482-015-0464-9	2015	*
Phylogeny	Salinicola zeshunii sp. nov., a moderately halophilic bacterium isolated from soil of a chicken farm.	Cao L, Yan Q, Ni H, Hu G, Hong Q, Li S	Curr Microbiol	10.1007/s00284-012-0259-4	2012	*
Phylogeny	Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and Salinicola halophilus nom. nov., respectively.	de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.014480-0	2009	*
Phylogeny	[Salinicola socius gen. nov., sp. nov., a moderately halophilic bacterium from a naphthalene-utilizing microbial association].	Anan'ina LN, Plotnikova EG, Gavrish EIu, Demakov VA, Evtushenko LI	Mikrobiologiia		2007	*

References

#8398

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19940

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75568

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID360154.1 )

* These data were automatically processed and therefore are not curated

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Salinicola socius DSM 19940

Salinicola socius DSM 19940

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