Salinicola socius (DSM 19940, VKM B-2397, SMB35)

Name: Salinicola socius (DSM 19940, VKM B-2397, SMB35)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6081

Type strain

Strain Designation SMB35

Culture col. no. DSM 19940 VKM B-2397 SMB35 UCCCB107

NCBI tax ID(s) 404433

Special Collections DSMZ UCCCB

History <- E. G. Plotnikova, IEGM; SMB35 <- L. N. Anan'ina and E. G. Plotnikova Emendations: de la Haba et al. 2010 de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A. Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and S

Links

Salinicola socius SMB35 is a bacterium that was isolated from soil of salt mines.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 360154

DSM 19940,VKM B-2397

@ref 20215

Last LPSN update 2026-02-09 11:19:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Salinicola

Species Salinicola socius

Full scientific name Salinicola socius Anan'ina et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.4
125438	negative	99.969

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8398	SMB MEDIUM (DSMZ Medium 1185)		Medium recipe at MediaDive	Name: SMB MEDIUM (DSMZ Medium 1185) Composition: NaCl 50.0 g/l Agar 15.0 g/l Tryptone 5.0 g/l Na2HPO4 3.0 g/l KH2PO4 2.0 g/l Yeast extract 2.0 g/l NH4NO3 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Na2CO3 0.1 g/l MnSO4 x 2 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8398	positive	growth	28
67772	positive	optimum	30-37
67772	positive	minimum	4
67772	positive	maximum	45

Culture pH

@ref	Ability	Type	PH
67772	positive	maximum	8.0
67772	positive	minimum	6.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	94.9

Spore formation

@ref	Spore formation	Confidence
125439		97.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
8398	soil of salt mines		Perm region, Berezniki	Russia	RUS	Europe
67772	Soil of salt mines	2001	Perm Krai, Berezniki	Russia	RUS	Europe	59.4167	56.7833 59.4167/56.7833

Taxonmaps

69479

Global distribution of 16S sequence DQ979342 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	98
Soil Samples	47
Animal Samples	71
Plant Samples	4
Total Samples	220

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8398	1	Risk group (German classification) According to TRBA 466
67772	1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM320611v1 assembly for Salinicola socius DSM 19940	scaffold	GCA_003206115	404433.6	2894301683	404433	71.17
67772	ASM193719v1 assembly for Salinicola socius SMB35	contig	GCA_001937195			404433	48.11

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8398	Salinicola socius strain SMB35 16S ribosomal RNA gene, partial sequence	DQ979342	1433		404433

GC content

@ref	GC-content (mol%)	Method
8398	63.0	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinicola socius DSM 19940
NCBI: GCA_003206115

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	yes	80.40	no
125439	gram_stain	BacteriaNetⓘ	negative	97.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	94.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salinicola socius DSM 19940
NCBI: GCA_003206115.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.97	no
125438	anaerobic	anaerobicⓘ	no	99.04	no
125438	aerobic	aerobicⓘ	yes	84.26	no
125438	spore-forming	spore-formingⓘ	no	88.08	no
125438	thermophilic	thermophileⓘ	no	98.48	yes
125438	flagellated	motile2+ⓘ	yes	78.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Genetic characterization of a novel Salinicola salarius isolate applied for the bioconversion of agro-industrial wastes into polyhydroxybutyrate.	Abdelrahman SA, Barakat OS, Ahmed MN.	Microb Cell Fact	10.1186/s12934-024-02326-z	2024
Enzymology	AhlX, an N-acylhomoserine Lactonase with Unique Properties.	Liu P, Chen Y, Shao Z, Chen J, Wu J, Guo Q, Shi J, Wang H, Chu X.	Mar Drugs	10.3390/md17070387	2019
Genetics	Life in High Salt Concentrations with Changing Environmental Conditions: Insights from Genomic and Phenotypic Analysis of Salinivibrio sp.	John J, Siva V, Richa K, Arya A, Kumar A.	Microorganisms	10.3390/microorganisms7110577	2019
	New insights into hydroxyectoine synthesis and its transcriptional regulation in the broad-salt growing halophilic bacterium Chromohalobacter salexigens.	Argandona M, Piubeli F, Reina-Bueno M, Nieto JJ, Vargas C.	Microb Biotechnol	10.1111/1751-7915.13799	2021
Genetics	Draft genome sequences of strains Salinicola socius SMB35(T), Salinicola sp. MH3R3-1 and Chromohalobacter sp. SMB17 from the Verkhnekamsk potash mining region of Russia.	Olsson BE, Korsakova ES, Anan'ina LN, Pyankova AA, Mavrodi OV, Plotnikova EG, Mavrodi DV	Stand Genomic Sci	10.1186/s40793-017-0251-5	2017
Phylogeny	Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and Salinicola halophilus nom. nov., respectively.	de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.014480-0	2009
Phylogeny	Description of Salinicola corii sp. nov., a Halotolerant Bacterium Isolated from Wetsalted Hides.	Li X, Chen J, Gan L, Tian Y, Shi B.	Curr Microbiol	10.1007/s00284-020-01989-2	2020
Phylogeny	Comparative 16S rRNA signatures and multilocus sequence analysis for the genus Salinicola and description of Salinicola acroporae sp. nov., isolated from coral Acropora digitifera.	Lepcha RT, Poddar A, Schumann P, Das SK	Antonie Van Leeuwenhoek	10.1007/s10482-015-0464-9	2015
Phylogeny	Salinicola zeshunii sp. nov., a moderately halophilic bacterium isolated from soil of a chicken farm.	Cao L, Yan Q, Ni H, Hu G, Hong Q, Li S	Curr Microbiol	10.1007/s00284-012-0259-4	2012
Phylogeny	[Salinicola socius gen. nov., sp. nov., a moderately halophilic bacterium from a naphthalene-utilizing microbial association].	Anan'ina LN, Plotnikova EG, Gavrish EIu, Demakov VA, Evtushenko LI	Mikrobiologiia		2007

References

#8398	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19940
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinicola socius (DSM 19940, VKM B-2397, SMB35)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003206115

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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