Name: Salinicola salarius M27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6080

Type strain:

Species: Salinicola salarius

Strain Designation: M27

Culture col. no.: DSM 18044, CIP 109895, KCTC 12664, UCCCB106

Strain history: Halomonas salaria Kim et al. 2007 - homotypic synonym, validly published

NCBI tax ID(s): 430457 (species)

Section

Salinicola salarius M27 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola salarius**
	Full Scientific Name (PNU)	Salinicola salarius (Kim et al. 2007) de la Haba et al. 2010

Synonym

Halomonas salaria

Information on morphological and physiological properties Morphology

[Ref.: #31987]	Gram stain	negative
[Ref.: #31987]	Cell length	1.3-1.7 µm
[Ref.: #31987]	Cell width	0.8-0.9 µm
[Ref.: #31987]	Cell shape	rod-shaped
[Ref.: #31987]	Motility	yes

[Ref.: #67771]	Gram stain	negative

[Ref.: #31987]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7265]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7265]

Culture medium growth

[Ref.: #7265]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7265]

Culture medium composition

expand / minimize

[Ref.: #37869]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #37869]

Culture medium growth

[Ref.: #37869]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7265]	growth	28 °C
[Ref.: #31987]	growth	10-45 °C
[Ref.: #31987]	optimum	25-30 °C
[Ref.: #37869]	growth	25 °C
[Ref.: #67771]	growth	28 °C
[Ref.: #67772]	optimum	25-30 °C
[Ref.: #67772]	minimum	10 °C
[Ref.: #67772]	maximum	45 °C

[Ref.: #7265]	Temperature range	mesophilic
[Ref.: #31987]	Temperature range	mesophilic
[Ref.: #37869]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	psychrophilic
[Ref.: #67772]	Temperature range	thermophilic

		pH	pH range
[Ref.: #67772]	maximum	10.0
[Ref.: #67772]	minimum	5.0
[Ref.: #31987]	optimum	07-08
[Ref.: #67772]	optimum	7.0-8.0
[Ref.: #31987]	growth	05-10	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31987]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31987]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31987]		NaCl		growth	0-25	%
[Ref.: #31987]		NaCl		optimum	10-20	%

[Ref.: #67771]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31987]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31987]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31987]	acetate ChEBI	+	carbon source
[Ref.: #31987]	arabinose ChEBI	+	carbon source
[Ref.: #31987]	citrate ChEBI	+	carbon source
[Ref.: #31987]	fucose ChEBI	+	carbon source
[Ref.: #31987]	glucose ChEBI	+	carbon source
[Ref.: #31987]	lactate ChEBI	+	carbon source
[Ref.: #31987]	malate ChEBI	+	carbon source
[Ref.: #31987]	maltose ChEBI	+	carbon source
[Ref.: #31987]	mannose ChEBI	+	carbon source
[Ref.: #31987]	nitrate ChEBI	+	reduction
[Ref.: #31987]	proline ChEBI	+	carbon source
[Ref.: #31987]	propionate ChEBI	+	carbon source
[Ref.: #31987]	ribose ChEBI	+	carbon source
[Ref.: #31987]	serine ChEBI	+	carbon source
[Ref.: #31987]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31987]		catalase	+	1.11.1.6
[Ref.: #31987]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7265]	Sample type/isolated from	seawater
[Ref.: #7265]	Geographic location (country and/or sea, region)	Anmyeondo
[Ref.: #7265]	Country	Republic of Korea
[Ref.: #7265]	Country ISO 3 Code	KOR
[Ref.: #7265]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #67772]	Sample type/isolated from	Sea water
[Ref.: #67772]	Sampling date	2006
[Ref.: #67772]	Geographic location (country and/or sea, region)	South Chungcheong Province, Anmyeondo
[Ref.: #67772]	Country	Republic of Korea
[Ref.: #67772]	Country ISO 3 Code	KOR
[Ref.: #67772]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM229316 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	1061
Soil Samples	139
Animal Samples	434
Plant Samples	109
Total Samples	1743

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7265]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7265]	Halomonas salaria partial 16S rRNA gene, type strain M27T	AM229316	1492	ENA	430457 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinicola salarius DSM 18044	GCA_003206135	scaffold	GenBank	430457 tax ID	*
[Ref.: #66792]	Salinicola salarius strain DSM 18044	430457.5	wgs	PATRIC	430457 tax ID	*
[Ref.: #66792]	Halomonas salaria DSM 18044	2900689798	draft	JGI IMG/M	430457 tax ID	*
[Ref.: #67772]	Salinicola acroporae strain LMG 28587, whole genome shotgun sequencing project	PRJNA371426		GenBank	1541440 tax ID
[Ref.: #67772]	Salinicola salarius 1A01339	GCA_002179555	contig		430457 tax ID
[Ref.: #66792]	Escherichia coli FWSEC0376	GCA_005040745	scaffold	PATRIC	562 tax ID	*

[Ref.: #7265]	GC-content	58.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31987]	GC-content	58.8-60.1 mol%
[Ref.: #67771]	GC-content	58.8 mol%

Availability in culture collections External links

[Ref.: #7265]

Culture collection no.

DSM 18044, CIP 109895, KCTC 12664, UCCCB106

[Ref.: #20218]

Associated Passport(s) in StrainInfo

701750, 857670, 701751

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas gomseomensis sp. nov., Halomonas janggokensis sp. nov., Halomonas salaria sp. nov. and Halomonas denitrificans sp. nov., moderately halophilic bacteria isolated from saline water.	Kim KK, Jin L, Yang HC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64767-0	2007	*
Phylogeny	Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and Salinicola halophilus nom. nov., respectively.	de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.014480-0	2009	*
Phylogeny	Salinicola peritrichatus sp. nov., isolated from deep-sea sediment.	Huo YY, Meng FX, Xu L, Wang CS, Xu XW	Antonie Van Leeuwenhoek	10.1007/s10482-013-9925-1	2013	*

References

#7265

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18044

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31987

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28241 (see below)

#37869 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28241

IJSEM 675 2007 ( DOI 10.1099/ijs.0.64767-0 , PubMed 17392185 )

* These data were automatically processed and therefore are not curated

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