Name: Salinicola salarius M27
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6080

Type strain:

Species: Salinicola salarius

Strain Designation: M27

Culture col. no.: DSM 18044, CIP 109895, KCTC 12664, UCCCB106

Strain history: CIP <- 2008, DSMZ <- K.K. Kim, KAIST, Daejeon, Korea: strain M27

NCBI tax ID(s): 430457 (species)

SI-ID 302759

DSM 18044, KCTC 12664, CIP 109895

Special Collections

Section

Salinicola salarius M27 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola salarius**
	Full Scientific Name (LPSN)	Salinicola salarius (Kim et al. 2007) de la Haba et al. 2010

Synonym

Halomonas salaria

Information on morphological and physiological properties Morphology

[Ref.: #31987]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #122361]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #31987]	Cell length	1.3-1.7 µm

[Ref.: #31987]	Cell width	0.8-0.9 µm

[Ref.: #31987]	Cell shape	rod-shaped
[Ref.: #122361]	Cell shape	rod-shaped

[Ref.: #31987]	Motility	yes
[Ref.: #122361]	Motility	no

[Ref.: #31987]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7265]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7265]

Culture medium growth

[Ref.: #7265]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7265]

Culture medium composition

expand / minimize

[Ref.: #37869]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #37869]

Culture medium growth

[Ref.: #37869]

Culture medium composition

expand / minimize

[Ref.: #122361]

Culture medium

CIP Medium 566

[Ref.: #122361]

Culture medium growth

[Ref.: #122361]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7265]	growth	28 °C
[Ref.: #31987]	growth	10-45 °C
[Ref.: #31987]	optimum	25-30 °C
[Ref.: #37869]	growth	25 °C
[Ref.: #67771]	growth	28 °C
[Ref.: #67772]	optimum	25-30 °C
[Ref.: #67772]	minimum	10 °C
[Ref.: #67772]	maximum	45 °C

		pH
[Ref.: #67772]	maximum	10.0
[Ref.: #67772]	minimum	5.0
[Ref.: #31987]	optimum	07-08
[Ref.: #67772]	optimum	7.0-8.0
[Ref.: #31987]	growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31987]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #122361]	Oxygen tolerance	obligate aerobe

[Ref.: #31987]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31987]		NaCl		growth	0-25	%
[Ref.: #31987]		NaCl		optimum	10-20	%

[Ref.: #67771]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31987]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31987]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31987]	acetate ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	arabinose ChEBI	+	carbon source
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	citrate ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	fucose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	lactate ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	malate ChEBI	+	carbon source
[Ref.: #31987]	maltose ChEBI	+	carbon source
[Ref.: #31987]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	nitrate ChEBI	+	reduction
[Ref.: #122361]	nitrate ChEBI	+	reduction
[Ref.: #122361]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	proline ChEBI	+	carbon source
[Ref.: #31987]	propionate ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	ribose ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	serine ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31987]	valerate ChEBI	+	carbon source
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122361]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31987]	catalase	+	1.11.1.6
[Ref.: #122361]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31987]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122361]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122361]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122361]	11687	not determinedn.d.	-	-	-	+/-	-	+/-	-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-	-	+/-	-	+/-	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122361]	12200	-	+	-	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7265]	Sample type/isolated from	seawater
[Ref.: #7265]	Geographic location (country and/or sea, region)	Anmyeondo
[Ref.: #7265]	Country	Republic of Korea
[Ref.: #7265]	Country ISO 3 Code	KOR
[Ref.: #7265]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #67772]	Sample type/isolated from	Sea water
[Ref.: #67772]	Sampling date	2006
[Ref.: #67772]	Geographic location (country and/or sea, region)	South Chungcheong Province, Anmyeondo
[Ref.: #67772]	Country	Republic of Korea
[Ref.: #67772]	Country ISO 3 Code	KOR
[Ref.: #67772]	Continent	Asia

[Ref.: #122361]	Sample type/isolated from	Environment, Saline water
[Ref.: #122361]	Geographic location (country and/or sea, region)	Anmyeondo
[Ref.: #122361]	Country	Republic of Korea
[Ref.: #122361]	Country ISO 3 Code	KOR
[Ref.: #122361]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM229316 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	1061
Soil Samples	139
Animal Samples	434
Plant Samples	109
Total Samples	1743

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7265]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1
[Ref.: #122361]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7265]	Halomonas salaria partial 16S rRNA gene, type strain M27T	AM229316	1492	GenBank ENA	430457 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola salarius 1A01339	GCA_002179555	contig	GenBank ENA	430457 tax ID
[Ref.: #66792]	Salinicola salarius DSM 18044	GCA_003206135	scaffold	GenBank ENA	430457 tax ID	*
[Ref.: #66792]	Salinicola salarius strain DSM 18044	430457.5	wgs	PATRIC	430457 tax ID	*
[Ref.: #66792]	Halomonas salaria DSM 18044	2900689798	draft	JGI IMG/M	430457 tax ID	*

[Ref.: #7265]	GC-content	58.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31987]	GC-content	58.8-60.1 mol%
[Ref.: #67771]	GC-content	58.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinicola salarius DSM 18044 NCBI: GCA_003206135.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicola salarius DSM 18044 NCBI: GCA_003206135.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.474	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.172	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.385	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.978	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.327	no

Availability in culture collections External links

[Ref.: #7265]

Culture collection no.

DSM 18044, CIP 109895, KCTC 12664, UCCCB106

[Ref.: #75567]

SI-ID 302759

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicola peritrichatus sp. nov., isolated from deep-sea sediment.	Huo YY, Meng FX, Xu L, Wang CS, Xu XW	Antonie Van Leeuwenhoek	10.1007/s10482-013-9925-1	2013	*
Phylogeny	Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and Salinicola halophilus nom. nov., respectively.	de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.014480-0	2009	*
Phylogeny	Halomonas gomseomensis sp. nov., Halomonas janggokensis sp. nov., Halomonas salaria sp. nov. and Halomonas denitrificans sp. nov., moderately halophilic bacteria isolated from saline water.	Kim KK, Jin L, Yang HC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64767-0	2007	*

References

#7265

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18044

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31987

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28241 (see below)

#37869 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75567

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID302759.1 )

#122361 Collection of Institut Pasteur ; Curators of the CIP; CIP 109895

#28241

IJSEM 675 2007 ( DOI 10.1099/ijs.0.64767-0 , PubMed 17392185 )

* These data were automatically processed and therefore are not curated

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Salinicola salarius DSM 18044

Salinicola salarius DSM 18044

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