Salinicola salarius (DSM 18044, CIP 109895, KCTC 12664)

Name: Salinicola salarius (DSM 18044, CIP 109895, KCTC 12664)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6080

Type strain

Strain Designation M27

Culture col. no. DSM 18044 CIP 109895 KCTC 12664 M27 UCCCB106

NCBI tax ID(s) 430457

Special Collections DSMZ KCTC CIP Literature strains UCCCB

History <- K. K. Kim, KAIST <- ST Lee, KAIST Halomonas salaria Kim et al. 2007 - homotypic synonym, validly published CIP <- 2008, DSMZ <- K.K. Kim, KAIST, Daejeon, Korea: strain M27

Links

Salinicola salarius M27 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 302759

DSM 18044,KCTC 12664,CIP 109895

@ref 20215

Last LPSN update 2026-02-09 11:19:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Salinicola

Species Salinicola salarius

Full scientific name Salinicola salarius (Kim et al. 2007) de la Haba et al. 2010

Synonyms (1)

Halomonas salaria

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31987	negative	1.3-1.7 µm	0.8-0.9 µm	rod-shaped
67771	negative
122361	negative			rod-shaped
125439	negative				99.7
125439					92.6
125438	negative				99.5

Pigmentation

31987

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7265	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830; with strain-specific modifications) Composition: NaCl 100.0 g/l Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
37869	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
122361	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7265	positive	growth	28
31987	positive	growth	10-45
31987	positive	optimum	25-30
37869	positive	growth	25
67771	positive	growth	28
67772	positive	optimum	25-30
67772	positive	minimum	10
67772	positive	maximum	45

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	10.0
67772	positive	minimum	5.0
31987	positive	optimum	07-08
67772	positive	optimum	7.0-8.0
31987	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31987	aerobe
67771	aerobe
122361	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
31987
125439		99.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31987	NaCl	positive	growth	0-25 %
31987	NaCl	positive	optimum	10-20 %

Observation

67771

Observationquinones: Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31987	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
31987	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
31987	30089 ChEBI	acetate	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
31987	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
31987	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
31987	33984 ChEBI	fucose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
31987	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31987	24996 ChEBI	lactate	+	carbon source
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31987	25115 ChEBI	malate	+	carbon source
31987	17306 ChEBI	maltose	+	carbon source
31987	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
31987	17632 ChEBI	nitrate	+	reduction
122361	17632 ChEBI	nitrate	+	reduction
122361	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
31987	26271 ChEBI	proline	+	carbon source
31987	17272 ChEBI	propionate	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31987	33942 ChEBI	ribose	+	carbon source
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
31987	17822 ChEBI	serine	+	carbon source
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
31987	31011 ChEBI	valerate	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122361	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31987	catalase	+	1.11.1.6
122361	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31987	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122361	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122361	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122361	-	+	-	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122361	not determinedn.d.	-	-	-	+/-	-	+/-	-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-	-	+/-	-	+/-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
7265	seawater		Anmyeondo	Republic of Korea	KOR	Asia
67771	From seawater			Republic of Korea	KOR	Asia
67772	Sea water	2006	South Chungcheong Province, Anmyeondo	Republic of Korea	KOR	Asia
122361	Environment, Saline water		Anmyeondo	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM229316 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	1061
Soil Samples	139
Animal Samples	434
Plant Samples	109
Total Samples	1743

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7265	1	Risk group (German classification) According to TRBA 466
67772	1
122361	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM320613v1 assembly for Salinicola salarius DSM 18044	scaffold	GCA_003206135	430457.5	2900689798	430457	69.58
67772	ASM217955v1 assembly for Salinicola salarius 1A01339	contig	GCA_002179555	430457.3	2833520110	430457	45.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7265	Halomonas salaria partial 16S rRNA gene, type strain M27T	AM229316	1492		430457

GC content

@ref	GC-content (mol%)	Method
7265	58.8	high performance liquid chromatography (HPLC)
31987	58.8-60.1
67771	58.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinicola salarius DSM 18044
NCBI: GCA_003206135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	92.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	80.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salinicola salarius DSM 18044
NCBI: GCA_003206135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	98.47	yes
125438	aerobic	aerobicⓘ	yes	84.17	no
125438	spore-forming	spore-formingⓘ	no	88.39	yes
125438	thermophilic	thermophileⓘ	no	97.98	yes
125438	flagellated	motile2+ⓘ	yes	79.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Genetic characterization of a novel Salinicola salarius isolate applied for the bioconversion of agro-industrial wastes into polyhydroxybutyrate.	Abdelrahman SA, Barakat OS, Ahmed MN.	Microb Cell Fact	10.1186/s12934-024-02326-z	2024
Enzymology	AhlX, an N-acylhomoserine Lactonase with Unique Properties.	Liu P, Chen Y, Shao Z, Chen J, Wu J, Guo Q, Shi J, Wang H, Chu X.	Mar Drugs	10.3390/md17070387	2019
Phylogeny	Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and Salinicola halophilus nom. nov., respectively.	de la Haba RR, Sanchez-Porro C, Marquez MC, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.014480-0	2009
Phylogeny	Salinicola peritrichatus sp. nov., isolated from deep-sea sediment.	Huo YY, Meng FX, Xu L, Wang CS, Xu XW	Antonie Van Leeuwenhoek	10.1007/s10482-013-9925-1	2013
Phylogeny	Halomonas gomseomensis sp. nov., Halomonas janggokensis sp. nov., Halomonas salaria sp. nov. and Halomonas denitrificans sp. nov., moderately halophilic bacteria isolated from saline water.	Kim KK, Jin L, Yang HC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64767-0	2007

References

#7265	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18044
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28241	IJSEM 675 2007 ( DOI 10.1099/ijs.0.64767-0 , PubMed 17392185 )
#31987	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28241
#37869	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122361	Collection of Institut Pasteur ; Curators of the CIP; CIP 109895
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinicola salarius (DSM 18044, CIP 109895, KCTC 12664)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003206135

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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