Name: Halomonas qijiaojingensis DSM 22403
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6079

Type strain:

Species: Halomonas qijiaojingensis

Culture col. no.: DSM 22403, CCTCC AB 208133, KCTC 22228, YIM 93003

Strain history: <- S.-K. Tang, YIM <- S.-K. Tang, YIM

NCBI tax ID(s): 980347 (species)

SI-ID 408211

DSM 22403

Special Collections

DSMZ
KCTC

Section

Halomonas qijiaojingensis DSM 22403 is a Gram-negative bacterium that was isolated from shore sediment from a salt lake.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas qijiaojingensis**
	Full Scientific Name (LPSN)	Halomonas qijiaojingensis Chen et al. 2012

Synonym

"Litchfieldella qijiaojingensis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16318]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #16318]

Culture medium growth

[Ref.: #16318]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16318]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16318]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16318]	Sample type/isolated from	shore sediment from a salt lake
[Ref.: #16318]	Geographic location (country and/or sea, region)	Xinjiang province, Qijiaojing Lake (43°23'01'' N 91°36'11'' E)
[Ref.: #16318]	Country	China
[Ref.: #16318]	Country ISO 3 Code	CHN
[Ref.: #16318]	Continent	Asia
[Ref.: #16318]	Geographic location	43.3836°/91.6031°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Coast
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ832735 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	149
Soil Samples	10
Animal Samples	1223
Plant Samples	2
Total Samples	1384

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16318]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16318]	Halomonas qijiaojingensis strain YIM 93003 16S ribosomal RNA gene, partial sequence	HQ832735	1474	GenBank ENA	980347 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas qijiaojingensis KCTC 22228	GCA_014651875	contig	GenBank ENA	980347 tax ID	*
[Ref.: #66792]	Halomonas qijiaojingensis strain KCTC 22228	980347.3	wgs	PATRIC	980347 tax ID	*

[Ref.: #16318]

GC-content

63.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas qijiaojingensis strain KCTC 22228 PATRIC: 980347.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.903	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.128	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.945	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.85	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.745	no

Availability in culture collections External links

[Ref.: #16318]

Culture collection no.

DSM 22403, CCTCC AB 208133, KCTC 22228, YIM 93003

[Ref.: #75566]

SI-ID 408211

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas qijiaojingensis sp. nov. and Halomonas flava sp. nov., two moderately halophilic bacteria isolated from a salt lake.	Chen C, Shi R, Liu BB, Zhang YJ, Sun HZ, Li CT, Tang SK, Zhang LL, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-011-9591-0	2011	*

References

#16318

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22403

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75566

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408211.1 )

* These data were automatically processed and therefore are not curated

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Halomonas qijiaojingensis strain KCTC 22228

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