Name: Halomonas caseinilytica ALO-SHARM
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6078

Type strain:

Species: Halomonas caseinilytica

Strain Designation: ALO-SHARM, Alosharm, Sharm

Culture col. no.: DSM 18067, ATCC BAA-1308, ALO Sharm

Strain history: <- A. Gambacorta, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; ALO-SHARM <- I. Romano

NCBI tax ID(s): 438744 (species)

SI-ID 298301

ATCC BAA-1308, DSM 18067

Special Collections

DSMZ

Other strains from Halomonas caseinilytica

Section

Halomonas caseinilytica ALO-SHARM is a Gram-negative bacterium that was isolated from water and soil from the edge of a small salt lake.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas caseinilytica**
	Full Scientific Name (LPSN)	Halomonas caseinilytica Wu et al. 2008

Synonym

Halomonas sinaiensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7360]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #7360]

Culture medium growth

[Ref.: #7360]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7360]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7360]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7360]	Sample type/isolated from	water and soil from the edge of a small salt lake
[Ref.: #7360]	Geographic location (country and/or sea, region)	Ras Muhammad Park, about 1 km far from the sea
[Ref.: #7360]	Country	Egypt
[Ref.: #7360]	Country ISO 3 Code	EGY
[Ref.: #7360]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM238662 (>99% sequence identity) for Halomonas caseinilytica from Microbeatlas

Aquatic Samples	1051
Soil Samples	295
Animal Samples	843
Plant Samples	56
Total Samples	2245

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7360]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7360]	Halomonas sinaiensis partial 16S rRNA gene, type strain Alosharm	AM238662	1470	GenBank ENA	438744 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas caseinilytica DSM 18067	GCA_001662285	contig	GenBank ENA	438744 tax ID	*
[Ref.: #66792]	Halomonas sinaiensis strain DSM 18067	379597.3	wgs	PATRIC	438744 tax ID	*
[Ref.: #66792]	Halomonas sinaiensis DSM 18067	2772190758	draft	JGI IMG/M	438744 tax ID	*

[Ref.: #7360]

GC-content

64.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas sinaiensis strain DSM 18067 PATRIC: 379597.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.721	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.193	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.67	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.979	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	67.333	no

Availability in culture collections External links

[Ref.: #7360]

Culture collection no.

DSM 18067, ATCC BAA-1308, ALO Sharm

[Ref.: #75565]

SI-ID 298301

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Halomonas sinaiensis sp. nov., a novel halophilic bacterium isolated from a salt lake inside Ras Muhammad Park, Egypt.	Romano I, Lama L, Orlando P, Nicolaus B, Giordano A, Gambacorta A	Extremophiles	10.1007/s00792-007-0100-3	2007	*
Phylogeny	Reclassification of Halomonas caseinilytica Wu et al. 2008 as a later synonym of Halomonas sinaiensis Romano et al. 2007, and emendation of the species description.	Hwang CY, Lee I, Yoon SJ, Lee YM, Lee WS, Lee HK	Antonie Van Leeuwenhoek	10.1007/s10482-016-0733-2	2016	*

References

#7360

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18067

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75565

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298301.1 )

* These data were automatically processed and therefore are not curated

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Halomonas sinaiensis strain DSM 18067

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