Strain identifier
BacDive ID: 6078
Type strain: 
Species: Halomonas caseinilytica
Strain Designation: ALO-SHARM, Alosharm, Sharm
Strain history: <- A. Gambacorta, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; ALO-SHARM <- I. Romano
NCBI tax ID(s): 438744 (species)
version 9.1 (current version)
General
@ref: 7360
BacDive-ID: 6078
DSM-Number: 18067
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Halomonas caseinilytica ALO-SHARM is a Gram-negative bacterium that was isolated from water and soil from the edge of a small salt lake.
NCBI tax id
- NCBI tax id: 438744
- Matching level: species
strain history
- @ref: 7360
- history: <- A. Gambacorta, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; ALO-SHARM <- I. Romano
doi: 10.13145/bacdive6078.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas caseinilytica
- full scientific name: Halomonas caseinilytica Wu et al. 2008
synonyms
- @ref: 20215
- synonym: Halomonas sinaiensis
@ref: 7360
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas caseinilytica
full scientific name: Halomonas caseinilytica Wu et al. 2008
strain designation: ALO-SHARM, Alosharm, Sharm
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 7360
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
- @ref: 7360
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 7360
- sample type: water and soil from the edge of a small salt lake
- geographic location: Ras Muhammad Park, about 1 km far from the sea
- country: Egypt
- origin.country: EGY
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_2627.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_1361;97_1615;98_1964;99_2627&stattab=map
- Last taxonomy: Halomonas caseinilytica
- 16S sequence: AM238662
- Sequence Identity:
- Total samples: 2245
- soil counts: 295
- aquatic counts: 1051
- animal counts: 843
- plant counts: 56
Safety information
risk assessment
- @ref: 7360
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7360
- description: Halomonas sinaiensis partial 16S rRNA gene, type strain Alosharm
- accession: AM238662
- length: 1470
- database: nuccore
- NCBI tax ID: 438744
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halomonas caseinilytica DSM 18067 | GCA_001662285 | contig | ncbi | 438744 |
| 66792 | Halomonas sinaiensis strain DSM 18067 | 379597.3 | wgs | patric | 438744 |
| 66792 | Halomonas sinaiensis DSM 18067 | 2772190758 | draft | img | 438744 |
GC content
- @ref: 7360
- GC-content: 64.7
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.721 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.193 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 81.67 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.979 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 67.333 | no |
External links
@ref: 7360
culture collection no.: DSM 18067, ATCC BAA-1308, ALO Sharm
straininfo link
- @ref: 75565
- straininfo: 298301
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 17618404 | Halomonas sinaiensis sp. nov., a novel halophilic bacterium isolated from a salt lake inside Ras Muhammad Park, Egypt. | Romano I, Lama L, Orlando P, Nicolaus B, Giordano A, Gambacorta A | Extremophiles | 10.1007/s00792-007-0100-3 | 2007 | Adaptation, Physiological, Amino Acids, Diamino/metabolism, Base Composition, Betaine/metabolism, DNA, Bacterial/analysis, Egypt, Genotype, Geologic Sediments/*microbiology, Glutamic Acid/metabolism, Halomonas/*classification/enzymology/genetics/growth & development/isolation & purification/metabolism, Hydrogen-Ion Concentration, Phenotype, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S, Sodium Chloride/*metabolism, Temperature, Ubiquinone/metabolism, *Water Microbiology, Water-Electrolyte Balance, alpha-Glucosidases/metabolism | Phylogeny |
| Phylogeny | 27418263 | Reclassification of Halomonas caseinilytica Wu et al. 2008 as a later synonym of Halomonas sinaiensis Romano et al. 2007, and emendation of the species description. | Hwang CY, Lee I, Yoon SJ, Lee YM, Lee WS, Lee HK | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0733-2 | 2016 | Genome, Bacterial, Halomonas/*classification/genetics, Japan, Molecular Typing, Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16S/genetics | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7360 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18067) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18067 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 75565 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID298301.1 | StrainInfo: A central database for resolving microbial strain identifiers |