Kushneria avicenniae (DSM 23439, CECT 7193, CIP 109711)

Name: Kushneria avicenniae (DSM 23439, CECT 7193, CIP 109711)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6083

Type strain

Strain Designation Mw2a

Culture col. no. DSM 23439 CECT 7193 CIP 109711 JCM 18993 Mw2a 1 more

NCBI tax ID(s) 402385

Special Collections DSMZ JCM CIP Literature strains

History <- CECT <- A. Ventosa <- R. Montalvo-Rodríguez; Mw2a DSM 23439 <-- CECT 7193 <-- A. Ventosa <-- R. Montalvo-Rodríguez Mw2a. CIP <- 2007, CECT <- 2006, A. Ventosa, Sevilla Univ., Sevilla, Spain <- R. Montalvo-Rodriguez, Puerto-Rico Univ., Puerto-Rico: strain MW2a

Links

Kushneria avicenniae Mw2a is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from leaves of the black mangrove Avicennia germinans.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 308612

DSM 23439,JCM 18993,CCM 7396,CECT 7193,CIP 109711

@ref 20215

Last LPSN update 2025-12-16 09:48:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Kushneria

Species Kushneria avicenniae

Full scientific name Kushneria avicenniae (Soto-Ramírez et al. 2007) Sánchez-Porro et al. 2009

Synonyms (1)

Halomonas avicenniae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32017	negative	2.3 µm	1.5 µm	rod-shaped
116663	negative			oval-shaped
125438	negative				100
125439	negative				99.9

Pigmentation

32017

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17211	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37819	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116663	CIP Medium 72	Medium recipe at CIP
116663	CIP Medium 328	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17211	positive	growth	28	mesophilic
32017	positive	growth	12-40
32017	positive	optimum	32.5	mesophilic
37819	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32017	positive	optimum	7.5
32017	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32017	aerobe
116663	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
32017
125439		99.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32017	NaCl	positive	growth	0-25 %
32017	NaCl	positive	optimum	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
32017	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
32017	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
32017	4853 ChEBI	esculin	+	hydrolysis
32017	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
32017	28260 ChEBI	galactose	+	carbon source
32017	5291 ChEBI	gelatin	+	carbon source
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
32017	17234 ChEBI	glucose	+	carbon source
32017	17754 ChEBI	glycerol	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
32017	17306 ChEBI	maltose	+	carbon source
32017	29864 ChEBI	mannitol	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
116663	17632 ChEBI	nitrate	-	reduction
116663	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
32017	17992 ChEBI	sucrose	+	carbon source
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
32017	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116663	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32017	catalase	+	1.11.1.6
116663	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
32017	gelatinase	+
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116663	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116663	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116663	-	+	+	-	-	-	-	-	-	-	+	+	-	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116663	not determinedn.d.	-	-	-	+/-	+/-	+/-	-	-	-	+/-	+/-	+/-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	+/-	-	+/-	+/-	+/-	-	+/-	-	-	-	-	-	-	-	-	+/-	+/-	-	+/-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
17211	leaves of the black mangrove Avicennia germinans	Avicennia germinans	Cape Red	Puerto Rico	PRI	Middle and South America
67770	Leaf surface of Avicennia germinans (black mangrove)	Avicennia germinans
116663	Plant, Leaves, Avicennia germinans		Cape Red, Puerto Rico	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence DQ888315 (>99% sequence identity) for Kushneria avicenniae from Microbeatlas

Aquatic Samples	14
Soil Samples	3
Animal Samples	18
Plant Samples	1
Total Samples	36

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17211	1	Risk group (German classification) According to TRBA 466
116663	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2684623008 annotated assembly for Kushneria avicenniae DSM 23439	contig	GCA_900112585	402385.4	2684623008	402385	75.7
124043	ASM4243325v1 assembly for Kushneria avicenniae CCM 7396	contig	GCA_042433255			402385	72.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17211	Halomonas avicenniae strain MW2a 16S ribosomal RNA gene, partial sequence	DQ888315	1433		402385
124043	Kushneria avicenniae strain CCM 7396 16S ribosomal RNA gene, partial sequence.	MT760136	1349		402385

GC content

@ref	GC-content (mol%)	Method
32017	61.5
67770	61.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kushneria avicenniae DSM 23439
NCBI: GCA_900112585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	86.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	86.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kushneria avicenniae strain DSM 23439
PATRIC: 402385.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	97.95	yes
125438	spore-forming	spore-formingⓘ	no	88.37	yes
125438	aerobic	aerobicⓘ	yes	83.95	no
125438	thermophilic	thermophileⓘ	no	99.29	yes
125438	flagellated	motile2+ⓘ	yes	76.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas avicenniae sp. nov., isolated from the salty leaves of the black mangrove Avicennia germinans in Puerto Rico.	Soto-Ramirez N, Sanchez-Porro C, Rosas S, Gonzalez W, Quinones M, Ventosa A, Montalvo-Rodriguez R	Int J Syst Evol Microbiol	10.1099/ijs.0.64818-0	2007

References

#17211	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23439
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28269	IJSEM 900 2007 ( DOI 10.1099/ijs.0.64818-0 , PubMed 17473230 )
#32017	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28269
#37819	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116663	Collection of Institut Pasteur ; Curators of the CIP; CIP 109711
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kushneria avicenniae (DSM 23439, CECT 7193, CIP 109711)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900112585

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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