Hafnia alvei (DSM 30163, ATCC 13337, CIP 57.31)

Name: Hafnia alvei (DSM 30163, ATCC 13337, CIP 57.31)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4938

Type strain

Strain Designation Type 32011

Culture col. no. DSM 30163 ATCC 13337 CIP 57.31 NCDC 434-68 NCTC 8105 15 more

NCBI tax ID(s) 910996 569

Special Collections DSMZ CCUG JCM CIP

Links

Hafnia alvei Type 32011 is a facultative anaerobe, mesophilic, Gram-negative human pathogen of the family Hafniaceae.

Gram-negative motile rod-shaped facultative anaerobe mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92428

LMG 10392,ATCC 13337,CECT 158,DSM 30163,JCM 1666,NCIMB 11999,NCTC 8105,PCM 537,CCUG 15720,NCIB 11999,NCIMB13060,CCUG 41547,NRRL B-4260,HAMBI 1279,HAMBI 1876,ICMP 7621,NBIMCC 1229,CNCTC 6394,CGMCC 1.2026,VTT E-991294,VTT E-022142,CIP 57.31

@ref 20215

Last LPSN update 2025-12-16 09:47:56

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Hafniaceae

Genus Hafnia

Species Hafnia alvei

Full scientific name Hafnia alvei Møller 1954 (Approved Lists 1980)

BacDive ID	Other strains from **Hafnia alvei** (48)	Type strain
130955	H. alvei 1004, DSM 24119
4934	H. alvei 5-5, DSM 15533
4935	H. alvei type 32011, DSM 30097, ATCC 11604
4936	H. alvei WS 10209, DSM 30098
4937	H. alvei 21183, DSM 30101
23928	H. alvei WS 20745, DSM 30099
131728	H. alvei FB1, DSM 102038
134802	H. alvei mutant 11, CIP 66.52
134803	H. alvei mutant 2, CIP 66.41
135651	H. alvei mutant 14, CIP 66.48
135652	H. alvei mutant 15, CIP 66.49
135774	H. alvei CIP 66.53
135815	H. alvei CIP A250
137092	H. alvei mutant 7, CIP 66.44
137118	H. alvei mutant 17, CIP 66.50
137119	H. alvei CIP 66.51
137727	H. alvei 1, CIP 106815
138463	H. alvei CIP 66.40
138919	H. alvei mutant 4, CIP 66.42
138921	H. alvei mutant 6, CIP 66.43
138922	H. alvei mutant 8, CIP 66.45
138923	H. alvei mutant 9, CIP 66.46
138924	H. alvei mutant 12, CIP 66.47
139255	H. alvei 5632-72, CIP 104949, ATCC 29926
141268	H. alvei CCUG 497
141755	H. alvei CCUG 6330, NCTC 8106
145307	H. alvei CCUG 28135
145757	H. alvei CCUG 29511
145758	H. alvei CCUG 29513
145769	H. alvei CCUG 29545
146069	H. alvei CCUG 30329
146238	H. alvei CCUG 30687
146257	H. alvei CCUG 30716
146483	H. alvei CCUG 31269
146560	H. alvei CCUG 31437
147162	H. alvei CCUG 32973
148768	H. alvei CCUG 35918
149558	H. alvei CCUG 37955
150541	H. alvei CCUG 41540
150573	H. alvei CCUG 41637
150811	H. alvei CCUG 42414
152052	H. alvei CCUG 45642
152201	H. alvei CCUG 46053
155828	H. alvei CCUG 59411
155960	H. alvei CCUG 59789
163286	H. alvei JCM 24184, ATCC 9760, NCTC 6578
171064	H. alvei CIMB 05-1105, CRBIP17.81
174475	H. alvei 115327, DSM 115327

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116316	negative	rod-shaped
125438	negative		99.985
125439	negative		99.1

Multimedia

@ref:	9173
multimedia content:	DSM_30163.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_30163.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9173	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9173	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41708	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116316	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9173	positive	growth	30	mesophilic
41708	positive	growth	30	mesophilic
67770	positive	growth	37	mesophilic
116316	positive	growth	10-41
116316	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116316	facultative anaerobe
125439	aerobe	90.1

Spore formation

@ref	Spore formation	Confidence
125439		98.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
116316	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
116316	17234 ChEBI	glucose	+	fermentation
116316	17234 ChEBI	glucose	+	degradation
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
116316	17716 ChEBI	lactose	-	fermentation
68368	25094 ChEBI	lysine	+	degradation	from API 20E
116316	15792 ChEBI	malonate	+	assimilation
116316	29864 ChEBI	mannitol	+	fermentation
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
116316	17632 ChEBI	nitrate	+	reduction
116316	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
116316	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
116316	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
116316	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
116316	15688 ChEBI	acetoin	+
68368	15688 ChEBI	acetoin	+			from API 20E
116316	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116316	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
116316	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116316	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
116316	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116316	lysine decarboxylase	+	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116316	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
116316	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116316	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116316	urease	+	3.5.1.5
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
9173	+	-	+	+	+	-	+	-	-	+	-	+	+	-	-	+	-	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
9173	+	-	+	+	+	-	+	-	-	+	-	+	+	-	-	+	-	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
9173	+	-	+	+	+	-	+	-	-	+	-	+	+	-	-	+	-	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116316	-	+	+	-	-	+	-	-	-	-	+	+	-	+	-	+	+	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116316	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	+	+	+	+	+	+	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	+	+	-	+	-	-	-	+	-	-	+	+	+	+	+	+	-	-	-	+

Isolation, sampling and environmental information

Isolation

116316

Isolation date1919

Taxonmaps

69479

Global distribution of 16S sequence AB519795 (>99% sequence identity) for Yersiniaceae from Microbeatlas

Aquatic Samples	4333
Soil Samples	2075
Animal Samples	18887
Plant Samples	2190
Total Samples	27485

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
9173			2	Risk group (German classification) According to TRBA 466
116316			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM366871v1 assembly for Hafnia alvei ATCC 13337	contig	GCA_003668715	910996.5		910996	66.69
67770	GHAL_DRAFTv1 assembly for Hafnia alvei ATCC 13337	contig	GCA_000735375	910996.3	2588253788	910996	46.86
67770	31180_B01 assembly for Hafnia alvei NCTC8105	contig	GCA_900451105	569.79	8117898656	569	35.22

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Hafnia alvei ATCC 13337 16S ribosomal RNA gene, partial sequence	M59155	1488	910996
20218	Hafnia alvei gene for 16S ribosomal RNA, partial sequence	AB519795	1473	569
124043	Hafnia alvei gene for 16S rRNA, partial sequence, strain: NBRC 105685.	AB682261	1468	569
124043	Hafnia alvei strain GD35 16S ribosomal RNA gene, partial sequence.	KF928791	1496	569

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hafnia alvei ATCC 13337
NCBI: GCA_000735375

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	yes	77.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	90.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hafnia alvei ATCC 13337
PATRIC: 910996.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.99	no
125438	anaerobic	anaerobicⓘ	no	94.88	no
125438	aerobic	aerobicⓘ	no	60.05	no
125438	spore-forming	spore-formingⓘ	no	88.66	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	75.42	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Development of a Droplet Digital Polymerase Chain Reaction for Rapid and Simultaneous Identification of Common Foodborne Pathogens in Soft Cheese.	Cremonesi P, Cortimiglia C, Picozzi C, Minozzi G, Malvisi M, Luini M, Castiglioni B.	Front Microbiol	10.3389/fmicb.2016.01725	2016
Enzymology	Development of rRNA-targeted PCR and in situ hybridization with fluorescently labelled oligonucleotides for detection of Yersinia species.	Trebesius K, Harmsen D, Rakin A, Schmelz J, Heesemann J.	J Clin Microbiol	10.1128/jcm.36.9.2557-2564.1998	1998
Pathogenicity	Revisiting host identification of bacteriophage Enc34: from biochemical to molecular.	Cernooka E, Dislers A, Kazaks A.	J Virol	10.1128/jvi.01731-23	2024
	Reducing Quorum Sensing-Mediated Virulence Factor Expression and Biofilm Formation in Hafnia alvei by Using the Potential Quorum Sensing Inhibitor L-Carvone.	Li T, Mei Y, He B, Sun X, Li J.	Front Microbiol	10.3389/fmicb.2018.03324	2018
	Occurrence of Selected Zoonotic Fecal Pathogens and First Molecular Identification of Hafnia paralvei in Wild Taihangshan Macaques (Macaca mulatta tcheliensis) in China.	Zhang Q, Han S, Liu K, Luo J, Lu J, He H.	Biomed Res Int	10.1155/2019/2494913	2019
Phylogeny	Identification of Hafnia alvei with the MicroScan WalkAway system.	Rodriguez LA, Vivas J, Gallardo CS, Acosta F, Barbeyto L, Real F.	J Clin Microbiol	10.1128/jcm.37.12.4186-4188.1999	1999
Biotechnology	Growth inhibition of various Enterobacteriaceae species by the yeast Hansenula anomala during storage of moist cereal grain.	Olstorpe M, Schnurer J, Passoth V.	Appl Environ Microbiol	10.1128/aem.06024-11	2012
Phylogeny	Prototypal diarrheagenic strains of Hafnia alvei are actually members of the genus Escherichia.	Janda JM, Abbott SL, Albert MJ.	J Clin Microbiol	10.1128/jcm.37.8.2399-2401.1999	1999
Enzymology	Development of an improved selective and differential medium for isolation of Salmonella spp.	Park SH, Ryu S, Kang DH.	J Clin Microbiol	10.1128/jcm.01228-12	2012
Enzymology	Hafnia alvei in stool specimens from patients with diarrhea and healthy controls.	Ridell J, Siitonen A, Paulin L, Mattila L, Korkeala H, Albert MJ.	J Clin Microbiol	10.1128/jcm.32.9.2335-2337.1994	1994
Metabolism	Characterization of EspC, a 110-kilodalton protein secreted by enteropathogenic Escherichia coli which is homologous to members of the immunoglobulin A protease-like family of secreted proteins.	Stein M, Kenny B, Stein MA, Finlay BB.	J Bacteriol	10.1128/jb.178.22.6546-6554.1996	1996
Enzymology	Characterization of Hafnia alvei by biochemical tests, random amplified polymorphic DNA PCR, and partial sequencing of 16S rRNA gene.	Ridell J, Siitonen A, Paulin L, Lindroos O, Korkeala H, Albert MJ.	J Clin Microbiol	10.1128/jcm.33.9.2372-2376.1995	1995
Phylogeny	Multiplex real-time PCR method to identify Shiga toxin genes stx1 and stx2 and Escherichia coli O157:H7/H- serotype.	Jinneman KC, Yoshitomi KJ, Weagant SD.	Appl Environ Microbiol	10.1128/aem.69.10.6327-6333.2003	2003
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
	The genus Hafnia: from soup to nuts.	Janda JM, Abbott SL.	Clin Microbiol Rev	10.1128/cmr.19.1.12-28.2006	2006
Metabolism	Inferring ancient metabolism using ancestral core metabolic models of enterobacteria.	Baumler DJ, Ma B, Reed JL, Perna NT.	BMC Syst Biol	10.1186/1752-0509-7-46	2013
Enzymology	Rapid identification of Yersinia enterocolitica in blood by the 5' nuclease PCR assay.	Sen K.	J Clin Microbiol	10.1128/jcm.38.5.1953-1958.2000	2000
	Divergence among genes encoding the elongation factor Tu of Yersinia Species.	Isabel S, Leblanc E, Boissinot M, Boudreau DK, Grondin M, Picard FJ, Martel EA, Parham NJ, Chain PS, Bader DE, Mulvey MR, Bryden L, Roy PH, Ouellette M, Bergeron MG.	J Bacteriol	10.1128/jb.01067-08	2008
Pathogenicity	Induction of the alkA gene of Escherichia coli in gram-negative bacteria.	Fernandez de Henestrosa AR, Barbe J.	J Bacteriol	10.1128/jb.173.23.7736-7740.1991	1991
Enzymology	Development of a rapid PCR assay specific for Staphylococcus saprophyticus and application to direct detection from urine samples.	Martineau F, Picard FJ, Menard C, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.38.9.3280-3284.2000	2000
	High-density microarray of small-subunit ribosomal DNA probes.	Wilson KH, Wilson WJ, Radosevich JL, DeSantis TZ, Viswanathan VS, Kuczmarski TA, Andersen GL.	Appl Environ Microbiol	10.1128/aem.68.5.2535-2541.2002	2002
Phylogeny	Development of a PCR assay for identification of staphylococci at genus and species levels.	Martineau F, Picard FJ, Ke D, Paradis S, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.39.7.2541-2547.2001	2001
Phylogeny	Occurrence and phenotypic characterization of Yersinia ruckeri strains with biofilm-forming capacity in a rainbow trout farm.	Coquet L, Cosette P, Quillet L, Petit F, Junter GA, Jouenne T.	Appl Environ Microbiol	10.1128/aem.68.2.470-475.2002	2002
Metabolism	Recombinant human bactericidal/permeability-increasing protein (rBPI23) is a universal lipopolysaccharide-binding ligand.	Appelmelk BJ, An YQ, Thijs BG, MacLaren DM, de Graaff J.	Infect Immun	10.1128/iai.62.8.3564-3567.1994	1994
Enzymology	Use of tuf sequences for genus-specific PCR detection and phylogenetic analysis of 28 streptococcal species.	Picard FJ, Ke D, Boudreau DK, Boissinot M, Huletsky A, Richard D, Ouellette M, Roy PH, Bergeron MG.	J Clin Microbiol	10.1128/jcm.42.8.3686-3695.2004	2004
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
	Development of a PCR assay for rapid detection of enterococci.	Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.37.11.3497-3503.1999	1999
Phylogeny	Evolution of aromatic amino acid biosynthesis and application to the fine-tuned phylogenetic positioning of enteric bacteria.	Ahmad S, Weisburg WG, Jensen RA.	J Bacteriol	10.1128/jb.172.2.1051-1061.1990	1990
Pathogenicity	New real-time PCR assay for rapid detection of methicillin-resistant Staphylococcus aureus directly from specimens containing a mixture of staphylococci.	Huletsky A, Giroux R, Rossbach V, Gagnon M, Vaillancourt M, Bernier M, Gagnon F, Truchon K, Bastien M, Picard FJ, van Belkum A, Ouellette M, Roy PH, Bergeron MG.	J Clin Microbiol	10.1128/jcm.42.5.1875-1884.2004	2004
	Pathogenic shifts in endogenous microbiota impede tissue regeneration via distinct activation of TAK1/MKK/p38.	Arnold CP, Merryman MS, Harris-Arnold A, McKinney SA, Seidel CW, Loethen S, Proctor KN, Guo L, Sanchez Alvarado A.	Elife	10.7554/elife.16793	2016
Pathogenicity	Reducing Salt in Raw Pork Sausages Increases Spoilage and Correlates with Reduced Bacterial Diversity.	Fougy L, Desmonts MH, Coeuret G, Fassel C, Hamon E, Hezard B, Champomier-Verges MC, Chaillou S.	Appl Environ Microbiol	10.1128/aem.00323-16	2016
	Functional and Genomic Analysis of Rouxiella badensis SER3 as a Novel Biocontrol Agent of Fungal Pathogens.	Morales-Cedeno LR, de Los Santos-Villalobos S, Santoyo G.	Front Microbiol	10.3389/fmicb.2021.709855	2021
Biotechnology	Comparison of fecal coliform agar and violet red bile lactose agar for fecal coliform enumeration in foods.	Leclercq A, Wanegue C, Baylac P.	Appl Environ Microbiol	10.1128/aem.68.4.1631-1638.2002	2002
	Hafnia Alvei on a Diabetic Foot: A Case Report.	Demir B, Birinci M, Catal B.	J Am Podiatr Med Assoc	10.7547/24-004	2025
Genetics	Koumiss Microbiome: Investigation of the Microbial Composition and Functional Potential of a Unique Beverage of Fermented Milk Produced at Kyrgyz Mountains.	Istanbullugil FR, Sanli K, Ozturk T, Keskin BC, Duysobayeva A, Risvanli A, Acaroz U, Acaroz DA, Salykov R, Sahin M.	Probiotics Antimicrob Proteins	10.1007/s12602-025-10718-9	2025
Enzymology	Tuning O₂ enzymatic reduction: Roles of methionine-rich domains and electrochemical metalation of active centers.	Saska V, Santucci P, de Poulpiquet A, Gasparutto D, Contaldo U, Mazurenko I, Lojou E.	Bioelectrochemistry	10.1016/j.bioelechem.2025.109051	2025
	alpha-Hydrazino Acids Inhibit Pyridoxal Phosphate-Dependent Decarboxylases via "Catalytically Correct" Ketoenamine Tautomers: A Special Motif for Chemical Biology and Drug Discovery?	Baine JM, Duhoo Y, Doukov T, Desfosses A, Bisello G, Beio ML, Bauer O, Perduca M, Bacia-Verloop M, Bertoldi M, Phillips RS, Gutsche I, Berkowitz DB.	ACS Catal	10.1021/acscatal.5c00326	2025
	The role and the determination of the LuxI protein binding targets in the formation of biogenic amines in Hafnia alvei H4.	Li X, Wang Y, Zhang G, Bi J, Hao H, Hou H.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2024.110928	2025
	Degradation of resorcinol and oxidation of pineapple waste to improve the energy potential through microbial fuel cells.	Alshammari MB, Ahmad A, Ibrahim MNM, Rosli NFB.	Environ Sci Pollut Res Int	10.1007/s11356-025-36300-y	2025
	Prevalence and antimicrobial resistance of Enterobacterales bacteria isolated from retail food in Poland.	Lopatek M, Denis E.	J Vet Res	10.2478/jvetres-2025-0055	2025
Metabolism	Effect of Hafnia alvei on Morphophysiologic Parameters and Gut Microbiota of Mice with Inherited Type 2 Diabetes Mellitus.	Zolotarev VA, Murovets VO, Novikova NS, Ermolenko EI, Sepp AL, Khropycheva RP.	Bull Exp Biol Med	10.1007/s10517-024-06180-2	2024
	Gram-Negative Microbiota Derived from Trout Fished in Slovakian Water Sources and Their Relationship to Postbiotics.	Laukova A, Kandricakova A, Scerbova J, Pogany Simonova M, Zitnan R.	Pathogens	10.3390/pathogens14070644	2025
	Prevalence of Biogenic Amines and Their Relation to the Bacterial Content in Ripened Cheeses on the Retail Market in Poland.	Pawul-Gruba M, Denis E, Kiljanek T, Osek J.	Foods	10.3390/foods14142478	2025
	Effect of psychrotrophic Lactiplantibacillus plantarum L75 with exoploysaccharides-producing property on fermentation, bacterial community, and antioxidant activity of oat silage at low temperature	Su R, Cui X, Guan H, Ke W, Liang Y, Chen H, Sheoran N, Jia M, Yang Y, Hao L, Zhao G, Guo X.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2024.116150	2024
	First report of Escherichia albertii in Iran: a case study highlighting diagnostic challenges in pediatric gastroenteritis.	Dadvar A, Nemati A, Hafiz M, Khammar Z, Romling U, Askari Badouei M, Hashemi Tabar G.	ASM Case Rep	10.1128/asmcr.00046-25	2025
	Specific Spoilage Bacterium of Chilled Sturgeon Fillets and the Bacterial Reduction Effect of ClO₂.	Yu S, Cen Q, Yu S, Hu W, Yin X, Shan M, Zeng X, Chen X.	Food Sci Nutr	10.1002/fsn3.71051	2025
	Prevalence and Etiology of Diarrhea in Children Under 5 Years Old at the Ngaoundere Regional Hospital, Cameroon: A Cross-Sectional Study.	Fokam Tagne MA, Talom Tangue B, Kuete Diffo EL, Noubissi PA, Foyet Fondjo A, Dourkangou Y, Kamgang R.	Health Sci Rep	10.1002/hsr2.71381	2025
Genetics	Integrated Metagenomic and LC-MS/MS Analysis Reveals the Biogenic Amine-Producing Strains of Two Typical Chinese Traditional Fish Products: Fermented Mandarin Fish (Siniperca chuatsi) and Semi-Dried Yellow Croaker (Larimichthys crocea).	Zhang X, Chi H, Peng D, Jiang M, Wang C, Zhang H, Kang W, Li L.	Foods	10.3390/foods14061016	2025
	Ultrasound-Assisted Extraction: Unlocking the Antibacterial Potential of Coptis chinensis Franch. Against ESBL-Producing Enterobacterales.	Hui CC, Lee FWF, Lung WCH, Fan KC, Wong ITF, Siu GKH, Chow YL, Chan PL, Ng SM, Shi L, Seto SW, Chow FWN, Tam EWT.	Molecules	10.3390/molecules30224331	2025
	The First Reported Case of Hafnia alvei Granulomatous Mastitis in Humans.	Al Saad S, Al Shenawi H, Farid E, Al Shenawi F, Shaker H, Al Shenawi N.	Cureus	10.7759/cureus.70989	2024
	Point-of-care Testing in Complicated Urinary Tract Infection: Evaluation of the Vivalytic One Urinary Tract Infection Analyser for Detecting Uropathogenic Bacteria and Antimicrobial Resistance in Urine Samples of Urological Patients in a Point-of-care Setting.	Hartmann J, Fritzenwanker M, Imirzalioglu C, Hain T, Michael Arneth B, Wagenlehner F.	Eur Urol Focus	10.1016/j.euf.2024.09.018	2024
	Bacterial diversity in the honey sac during bee foraging on winter-flowering flora and dominant Bacillus subtilis inhibits Hafnia alvei.	Wang M, Zhao W, Zhou D, Huang J.	Front Insect Sci	10.3389/finsc.2025.1555434	2025
Genetics	Gut microbiota remodeling and sensory-emotional functional disruption in adolescents with bipolar depression.	Tang A, Chen Y, Ding J, Li Z, Xu C, Hu S, Lai J.	J Transl Med	10.1186/s12967-025-07152-4	2025
	Association of specific gut microbiota with polyethylene microplastics caused gut dysbiosis and increased susceptibility to opportunistic pathogens in honeybees.	Zhu L, Wang K, Wu X, Zheng H, Liao X.	Sci Total Environ	10.1016/j.scitotenv.2024.170642	2024
	Microbiological Quality and Safety of Fresh Pork Meat with Special Reference to Methicillin-Resistant S. aureus and Other Staphylococci.	Martinez-Laorden A, Arraiz-Fernandez C, Ibanez-Torija G, Gonzalez-Fandos E.	Vet Sci	10.3390/vetsci12060568	2025
	Radish residue carbon dots-based novel starch/chitosan film with high antioxidant, biocompatibility, and antibacterial activities for salmon fillets' active packaging.	Wang D, Wang X, Zhou S, Ren L, Meng Y, Ma R, Wang S, Liu Z, Alamri AS, Alhomrani M, Zhang Z, Cui F, Li T, Li J.	Int J Biol Macromol	10.1016/j.ijbiomac.2024.133107	2024
	Growth and Diversity of Spoiling and Foodborne Bacteria in Poultry Hamburgers in Modified Atmosphere and with Sulfites During Shelf Life.	Gonzalez-Fandos E, Martinez Laorden A, Condon Uson S, Serrano Andres MJ.	Microorganisms	10.3390/microorganisms13040754	2025
	Aztreonam plus ceftazidime-avibactam for post-neurosurgical meningitis due to Stenotrophomonas maltophilia.	Wong-So J, Magreault S, Carbonnelle E, Jullien V, Desgrouas M, Boulain T, Barbier F.	Antimicrob Agents Chemother	10.1128/aac.00172-25	2025
	Microbiology of acute bacterial dacryocystitis: a tertiary institutional experience in South Australia.	Gowda A, Tong JY, Selva D.	Int Ophthalmol	10.1007/s10792-024-03236-0	2024
	Microbiological, physicochemical, and sensory changes throughout ripening of an experimental soft smear-ripened cheese in relation to salt concentrations.	Leclercq-Perlat MN, Saint-Eve A, Picque D, Trelea IC.	J Dairy Sci	10.3168/jds.2024-24307	2024
	Revealing the genetic traits of the foodborne microbial genus hafnia: Implications for the human gut microbiome.	Fontana F, Longhi G, Carli E, Alessandri G, Mancabelli L, Lugli GA, Tarracchini C, Viappiani A, Anzalone R, Turroni F, Milani C, Ventura M.	Environ Microbiol	10.1111/1462-2920.16626	2024
	In Situ Spatiotemporal SERS Profiling of Bacterial Quorum Sensing by Hierarchical Hydrophobic Plasmonic Arrays in Agar Medium.	Qu C, Geng Y, Ding Z, Li Y, Jiang H, Su M, Liu H.	Anal Chem	10.1021/acs.analchem.3c04299	2024
	Health impacts of poor water quality on an endangered shorebird breeding programme in Aotearoa New Zealand.	Gartrell BD, Hunter S, Collen R, Jolly M, McInnes K, Richardson A, Reed C, Ward R, Pita A.	N Z Vet J	10.1080/00480169.2023.2263425	2024
	How the Larger Methionine-Rich Domain of CueO from Hafnia alvei Enhances Cuprous Oxidation.	Contaldo U, Santucci P, Vergnes A, Leone P, Becam J, Biaso F, Ilbert M, Ezraty B, Lojou E, Mazurenko I.	JACS Au	10.1021/jacsau.5c00076	2025
	Current Trends in Antibiotic Resistance Patterns of Pathogens in Urinary Tract Infections in Children in Karaganda, Kazakhstan.	Yeleupayeva S, Dinmukhamedova A, Aizman R, Mukataeva Z, Baidalinova B, Bazarbaeva S, Zhakupov M, Rakhimzhanova Z, Kuzenbayeva A.	Iran J Med Sci	10.30476/ijms.2025.105826.3980	2025
	Selective reporting of antibiotic susceptibility testing results: a retrospective evaluation of a nudging strategy to improve antibiotic prescribing for ampC-producing Enterobacterales infections in hospitalized adults.	Lim A, McSweeney T, Thwe PM, Chang MH, Bao H, Lee P, Cowman K, Nori P, Guo Y.	Ther Adv Infect Dis	10.1177/20499361251338017	2025
	Opportunity for early de-escalation of antibiotics in Enterobacterales bacteremia with multiplex PCR rapid diagnostic technology.	Deja E, Greenfield A, Sastry S, Rittmann B.	Antimicrob Steward Healthc Epidemiol	10.1017/ash.2024.488	2025
	Epidemiology and prediction of non-targeted bacteria by the filmarray pneumonia plus panel in culture-positive ventilator-associated pneumonia: a retrospective multicentre analysis.	Berteau F, Kouatchet A, Le Gall Y, Pouplet C, Delbove A, Darreau C, Lemarie J, Jarousseau F, Reizine F, Giacardi C, Allo G, Aubron C, Eveillard M, Dubee V, Mahieu R.	Ann Intensive Care	10.1186/s13613-025-01468-6	2025
	Isolation of Hafnia alvei from bronchoalveolar lavage of an immunocompetent host presenting with cavitating pneumonia: Contaminant or Causative?	Lim J, Bolger K, Canavan B.	Germs	10.18683/germs.2023.1398	2023
	High throughput qPCR analyses suggest that Enterobacterales of French sheep and cow cheese rarely carry genes conferring resistances to critically important antibiotics for human medicine.	Delannoy S, Hoffer C, Tran ML, Madec JY, Brisabois A, Fach P, Haenni M.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2023.110303	2023
	Bacteraemia in a Nigerian hospital: Implementing antimicrobial resistance surveillance.	Amupitan AA, Adeyemo AT, Amupitan AO, Obadare TO, Aboderin AO.	J Public Health Afr	10.4102/jphia.v16i1.655	2025
	Prevalence and Antimicrobial Resistance of Enterobacteriaceae in Wild Birds Across Europe: A Systematic Review.	Cocos DI, Dumitrescu E, Muselin F, Brezovan D, Degi J, Boldura OM, Cristina RT.	Antibiotics (Basel)	10.3390/antibiotics14090905	2025
Genetics	Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product.	Shangpliang HNJ, Tamang JP.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2023.110300	2023
	Characterization of Exopolysaccharides from Lactiplantibacillus plantarum PC715 and Their Antibiofilm Activity Against Hafnia alvei.	Tan X, Ma B, Wang X, Cui F, Li X, Li J.	Microorganisms	10.3390/microorganisms12112229	2024
	First report of a carbapenemase OXA-48-producing Hafnia alvei clinical isolate.	Sevillano L, Herrera C, Valdes A, de la Hoz A, Cardenoso L, Domingo D, Semiglia MA.	Access Microbiol	10.1099/acmi.0.000498.v3	2023
	Epidemiology, drug resistance, and clinical risk factors of peritoneal dialysis-associated peritonitis: a five-year multicenter study.	Zhang M, Li X, Zhang Y, Wu J, Liu J, Li Y, Wang A, Xu Y, Wang B, Xia J.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1654246	2025
Transcriptome	Transcriptome Reveals Regulation of Quorum Sensing of Hafnia alvei H4 on the Coculture System of Hafnia alvei H4 and Pseudomonas fluorescens ATCC13525.	Wang Y, Li X, Zhang G, Bi J, Hou H.	Foods	10.3390/foods13020336	2024
Pathogenicity	Diagnostic performance of Pneumonia multiplex PCR in critically ill immunocompromised patients.	Contier J, Platon L, Benchabane N, Tchakerian S, Herman F, Mollevi C, Ceballos P, Godreuil S, Klouche K.	Crit Care	10.1186/s13054-025-05528-y	2025
	Mechanism of berberine hydrochloride interfering with biofilm formation of Hafnia alvei.	Pang Y, Wang S, Tao J, Wang J, Xue Z, Wang R.	Arch Microbiol	10.1007/s00203-021-02617-8	2022
	Quantifying microbial interactions based on compositional data using an iterative approach for solving generalized Lotka-Volterra equations.	Huang Y, Tang T, Dai X, Sun F.	PLoS Comput Biol	10.1371/journal.pcbi.1013691	2025
	Microbial and Sensory Quality Changes in Broiler Chicken Breast Meat During Refrigerated Storage.	Augustynska-Prejsnar A, Kacaniova M, Hanus P, Sokolowicz Z, Slowinski M.	Foods	10.3390/foods13244063	2024
	The Phase-Dependent Regulation of Lux-Type Genes on the Spoilage Characteristics of Hafnia alvei.	Bi J, Yao Q, Zhang G, Hou H.	Foods	10.3390/foods13050688	2024
Metabolism	Comparison of Glucose Metabolizing Properties of Enterobacterial Probiotic Strains In Vitro.	Balanche J, Lahaye E, Bremard L, Thomas B, Fetissov SO.	Nutrients	10.3390/nu16162677	2024
	Carbapenem resistance and biofilm formation status of Enterobacterales isolated from raw milk via molecular versus phenotypic methods.	Ozdikmenli Tepeli S, Numanoglu Cevik Y, Tosun MN, Taylan Yalcin G, Kaya B, Ipek D, Bakkaloglu Z, Simsek H, Zorba NN.	Antonie Van Leeuwenhoek	10.1007/s10482-022-01799-5	2023
	Microbiological Quality and Antibiotic Resistance of Relevant Bacteria from Horsemeat.	Gonzalez-Fandos E, da Silva Guedes J.	Microorganisms	10.3390/microorganisms12091775	2024
	Pediococcus pentosaceus OL77 Enhances Oat (Avena sativa) Silage Fermentation Under Cold Conditions.	Liu X, Zhao G, Bai J, Qu X, Chai J, Lin D.	Microorganisms	10.3390/microorganisms13102248	2025
	Gut microbiota profile and atopic dermatitis in the first year of life.	Pantazi AC, Nori W, Kassim MAK, Balasa AL, Mihai CM, Chisnoiu T, Mihai L, Ungureanu A, Frecus CE, Chirila SI, Cambrea SC.	J Med Life	10.25122/jml-2024-0287	2024
	Exploring Antimicrobial Resistance in Bacteria from Fecal Samples of Insectivorous Bats: A Preliminary Study.	Di Bella S, Gambino D, Foti M, Orlandella BM, Fisichella V, Gucciardi F, Mira F, Grasso R, Spena MT, Purpari G, Guercio A.	Vet Sci	10.3390/vetsci12060516	2025
	Antibiotic Treatment of Infections Caused by AmpC-Producing Enterobacterales.	Tebano G, Zaghi I, Cricca M, Cristini F.	Pharmacy (Basel)	10.3390/pharmacy12050142	2024
Metabolism	AHL-differential quorum sensing regulation of amino acid metabolism in Hafnia alvei H4.	Yan C, Li X, Zhang G, Bi J, Hao H, Hou H.	Microbiol Spectr	10.1128/spectrum.00687-23	2024
	Complete Genome Sequence of a Novel Hafnia alvei Bacteriophage.	Bullen A, Grahe A, Kassolis P, Singleton DR.	Microbiol Resour Announc	10.1128/mra.00049-22	2022
	The bacterial chaperone CsgC inhibits functional amyloid CsgA formation by promoting the intrinsically disordered pre-nuclear state.	Balistreri A, Kolli D, Jayaweera SW, Lundahl D, Han Y, Kalcec L, Goetzler E, Alessio R, Ruotolo B, Olofsson A, Chapman MR.	J Biol Chem	10.1016/j.jbc.2025.110217	2025
	Generation of phytase chimeras with low sequence identities and improved thermal stability.	Herrmann KR, Hofmann I, Jungherz D, Wittwer M, Infanzon B, Hamer SN, Davari MD, Ruff AJ, Schwaneberg U.	J Biotechnol	10.1016/j.jbiotec.2021.07.005	2021
	Nano- and micro-polystyrene plastics disturb gut microbiota and intestinal immune system in honeybee.	Wang K, Zhu L, Rao L, Zhao L, Wang Y, Wu X, Zheng H, Liao X.	Sci Total Environ	10.1016/j.scitotenv.2022.156819	2022
	Novel Coating Approaches for Polyethylene Biliary Stents to Reduce Microbial Adhesion, Prevent Biofilm Formation, and Prolong Stent Patency	Wagner L, Stolte P, Heller S, Schippers D, Pforringer D, Tubel J, Schmid R, Burgkart R, Schneider J, Obermeier A.	Biomedicines		2025
	Rapid detection of beta-lactamase activity using the rapid Amp NP test.	Nordmann P, Helsens N, Kieffer N, Tinguely C, Greub G, Poirel L.	Microbiol Spectr	10.1128/spectrum.00782-24	2025
	Evaluating the impact of COVID-19 infection and vaccination on the presentation and severity of idiopathic granulomatous mastitis: A retrospective cohort study.	Erkan S, Aytac HO, Ozdemir H, Avci T, Gundogdu R, Kus M, Gunesli A, Pehlivan UA, Ulas CY.	Medicine (Baltimore)	10.1097/md.0000000000043151	2025
	Shotgun Proteomics Analysis, Functional Networks, and Peptide Biomarkers for Seafood-Originating Biogenic-Amine-Producing Bacteria.	Abril AG, Calo-Mata P, Bohme K, Villa TG, Barros-Velazquez J, Pazos M, Carrera M.	Int J Mol Sci	10.3390/ijms24097704	2023
	Inhibitory effects of pH, salinity, and tea polyphenols concentration on the specific spoilage organisms isolated from lightly-salted large yellow croaker (Pseudosciaena crocea).	Guo QY, Shan K, Yang X, Jiang CJ, Zhu L.	Food Sci Nutr	10.1002/fsn3.2905	2022
	Bacteria in Surgical Smoke: A Self-controlled Laboratory Study Using Porcine Spinal Tissues.	Zhu Z, Liu N, Xia W, Liu H, Wood KB, Wang K.	Spine (Phila Pa 1976)	10.1097/brs.0000000000004079	2021
Biotechnology	Incorporation of probiotics in post-harvest wash treatments reduces Salmonella contamination and improves egg safety.	Reddyvari R, Lu S, Kosuri P, Amalaradjou MA.	Poult Sci	10.1016/j.psj.2025.105146	2025
	Yokenella regensburgei-Past, Present and Future.	Toc DA, Costache C, Neculicioiu VS, Rusu IM, Roznovan BV, Botan A, Toc AG, Schiopu P, Panaitescu PS, Pana AG, Colosi IA.	Antibiotics (Basel)	10.3390/antibiotics13070589	2024
Enzymology	COVID-19 influences lung microbiota dynamics and favors the emergence of rare infectious diseases: A case report of Hafnia Alvei pneumonia.	Cutuli SL, De Maio F, De Pascale G, Grieco DL, Monzo FR, Carelli S, Tanzarella ES, Pintaudi G, Piervincenzi E, Cascarano L, Xhemalaj R, Sanguinetti M, Posteraro B, Spanu T, Antonelli M.	J Crit Care	10.1016/j.jcrc.2021.04.008	2021
	Viable and Heat-Resistant Microbiota with Probiotic Potential in Fermented and Non-Fermented Tea Leaves and Brews.	Uhlig E, Megaelectra A, Molin G, Hakansson A.	Microorganisms	10.3390/microorganisms13050964	2025
	Molecular characterization, virulence and antimicrobial and biocidal susceptibility of selected bacteria isolated from the cloaca of nestling ospreys (Pandion haliaetus) from Mono Lake, California, USA.	Loncaric I, Szostak MP, Cabal-Rosel A, Grunzweil OM, Riegelnegg A, Misic D, Muller E, Fessler AT, Braun SD, Schwarz S, Monecke S, Ehricht R, Ruppitsch W, Spergser J, Lewis A, Bloom PH, Saggese MD.	PLoS One	10.1371/journal.pone.0311306	2024
	Vendors' handling practices of edible long-horned grasshoppers (Ruspolia differens) products and implications on microbial safety.	Mugo-Kamiri L, Imungi JK, Njue L, Diiro G, Ombura FLO, Akutse KS, Chrysantus TM, Khamis FM, Subramanian S.	Front Microbiol	10.3389/fmicb.2024.1385433	2024
Metabolism	Protein Extract of a Probiotic Strain of Hafnia alvei and Bacterial ClpB Protein Improve Glucose Tolerance in Mice.	Zolotarev VA, Murovets VO, Sepp AL, Sozontov EA, Lukina EA, Khropycheva RP, Pestereva NS, Ivleva IS, El Mehdi M, Lahaye E, Chartrel N, Fetissov SO.	Int J Mol Sci	10.3390/ijms241310590	2023
	Determination and molecular analysis of antibiotic resistance in Gram-negative enteric bacteria isolated from Pelophylax sp. in the Eastern Black Sea Region.	Rakici E, Altunisik A, Sahin K, Ozgumus OB.	Acta Vet Hung	10.1556/004.2021.00039	2021
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	Cultivable Gut Microbiota in Synanthropic Bats: Shifts of Its Composition and Diversity Associated with Hibernation.	Popov IV, Berezinskaia IS, Popov IV, Martiusheva IB, Tkacheva EV, Gorobets VE, Tikhmeneva IA, Aleshukina AV, Tverdokhlebova TI, Chikindas ML, Venema K, Ermakov AM.	Animals (Basel)	10.3390/ani13233658	2023
	Management of a complex transjugular intrahepatic portosystemic shunt dysfunction with endotipsitis through rotational thrombectomy.	Vizzutti F, Casamassima E, Falcone G, Gabbani G, Rosi M, Adotti V, Marra F, Fanelli F.	BJR Case Rep	10.1093/bjrcr/uaae005	2024
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	Potential quorum-sensing inhibitor of Hafnia alvei H4-theaflavin-3,3´-digallate analyzed by virtual screening and molecular simulation.	Li X, Yan C, Wang Y, Zhang G, Bi J, Hao H, Hou H.	Microbiol Spectr	10.1128/spectrum.02671-23	2023
	Hafnia alvei Pneumonia: A Rare Cause of Infection in a Patient with COVID-19.	Mendez L, Ferreira J, Caneiras C.	Microorganisms	10.3390/microorganisms9112369	2021
	Microbiological Comparison of Maxillary Sinus Rinses in Non-Odontogenic and Odontogenic Sinusitis of Primarily Endodontic Origin.	Kwiatkowska MA, Guzek A, Jurkiewicz D, Patyk I, Pajda B, Rot P.	J Clin Med	10.3390/jcm14144880	2025
Phylogeny	Isolation and Detection of the Emerging Pathogen Escherichia albertii in Clinical Stool Samples and the Potential Transmission by Meat Samples in Retail.	Zafar MZ, De Rauw K, Van den Abeele AM, Joossens M, Heyvaert L, Houf K.	Microorganisms	10.3390/microorganisms12122408	2024
	Global Epidemiology and Antimicrobial Resistance of Klebsiella Pneumoniae Carbapenemase (KPC)-Producing Gram-Negative Clinical Isolates: A Review.	Falagas ME, Asimotou CM, Zidrou M, Kontogiannis DS, Filippou C.	Microorganisms	10.3390/microorganisms13071697	2025
	Dried Herbs as an Easy-to-Use and Cost-Effective Alternative to Essential Oils to Extend the Shelf Life of Sheep Lump Cheese.	Kunova S, Taglieri I, Hascik P, Ben Hsouna A, Mnif W, Venturi F, Sanmartin C, Cmikova N, Kluz MI, Kacaniova M.	Foods	10.3390/foods12244487	2023
Metabolism	The effect of protective cultures on Staphylococcus aureus growth and enterotoxin production.	Aljasir SF, D'Amico DJ.	Food Microbiol	10.1016/j.fm.2020.103541	2020
	Study of the Microbiome of the Cretan Sour Cream Staka Using Amplicon Sequencing and Shotgun Metagenomics and Isolation of Novel Strains with an Important Antimicrobial Potential.	Papadimitriou K, Georgalaki M, Anastasiou R, Alexandropoulou AM, Manolopoulou E, Zoumpopoulou G, Tsakalidou E.	Foods	10.3390/foods13071129	2024
	Optimizing Diagnosis and Management of Ventilator-Associated Pneumonia: A Systematic Evaluation of Biofilm Detection Methods and Bacterial Colonization on Endotracheal Tubes.	Codru IR, Vintila BI, Sava M, Bereanu AS, Neamtu SI, Badila RM, Birlutiu V.	Microorganisms	10.3390/microorganisms12101966	2024
	Diversity of bacterial pathogens and their antimicrobial resistance profile among commensal rodents in Qatar.	Islam MM, Farag E, Hassan MM, Enan KA, Mohammad Sabeel KV, Alhaddad MM, Smatti MK, Al-Marri AM, Al-Zeyara AA, Al-Romaihi H, Yassine HM, Sultan AA, Bansal D, Mkhize-Kwitshana Z.	Vet Res Commun	10.1007/s11259-021-09876-2	2022
	In and Outpatients Bacteria Antibiotic Resistances in Positive Urine Cultures from a Tertiary Care Hospital in the Western Part of Romania-A Cross-Sectional Study.	Olariu N, Licker M, Chisavu L, Chisavu F, Schiller A, Marc L, Albai O, Paunescu A, Tucicovschi V, Mihaescu A, Apostol A.	Diseases	10.3390/diseases13030074	2025
	Isolation and Bioactivity of Natural Products from Streptomyces sp. MA37.	Maglangit F, Fang Q, Tabudravu JN, Kyeremeh K, Jaspars M, Deng H.	Molecules	10.3390/molecules30020306	2025
	EVALUATION OF PHENOTYPIC AND MOLECULAR TECHNIQUE IN THE DETECTION OF EXTENDED SPECTRUM BETA-LACTAMASE (ESBL)-PRODUCING GRAM NEGATIVE BACILLI IN OGUN STATE, NIGERIA.	Ajani TA, Elikwu CJ, Anaedobe CG, Onwuzo CN, Tayo B, Okangba CC, Makanjuola OB.	Ann Ib Postgrad Med		2022
	Diagnosis and successful medical management of a renal corticomedullary abscess in a dog.	Johnson C, Lapsley J, Piegols H, Byron J, Green E, Selmic LE.	Can Vet J		2024
	The Role of Next-Generation Probiotics in Obesity and Obesity-Associated Disorders: Current Knowledge and Future Perspectives.	Vallianou NG, Kounatidis D, Tsilingiris D, Panagopoulos F, Christodoulatos GS, Evangelopoulos A, Karampela I, Dalamaga M.	Int J Mol Sci	10.3390/ijms24076755	2023
	Detection of Extended-Spectrum Beta-Lactamase-Producing and Carbapenem-Resistant Bacteria from Mink Feces and Feed in the United States.	Agga GE, Silva PJ, Martin RS.	Foodborne Pathog Dis	10.1089/fpd.2020.2898	2021
	Developing a plant based hand sanitizer using antibacterial Apium graveolens leaf extract	Shafi F, Iram S, Jabeen A, Manzoor S, Naseer B, Bhat T, Amin T, Mushtaq F.	Sci Rep		2025
	Antimicrobial resistance of Enterobacterales in Central Africa: a systematic review and meta-analysis.	Gare M, Chesnais CB, Campillo JT, Ngogang MP, Fonkoua MC, Le Moing V, Boulle C.	Commun Med (Lond)	10.1038/s43856-025-01148-3	2025
Biotechnology	Screening of New Industrially Important Bacterial Strains for 1,3-Propanediol, 2,3-Butanediol and Ethanol Production through Biodiesel-Derived Glycerol Fermentations.	Karayannis D, Vasilakis G, Charisteidis I, Litinas A, Manolopoulou E, Tsakalidou E, Papanikolaou S.	Microorganisms	10.3390/microorganisms11061424	2023
	Aztreonam-avibactam Demonstrates Potent Activity Against Carbapenem-resistant Enterobacterales Collected From US Medical Centers Over a 6-year Period (2017-2022).	Papp-Wallace KM, Sader HS, Maher JM, Kimbrough JH, Castanheira M.	Open Forum Infect Dis	10.1093/ofid/ofaf250	2025
	Peritonitis-related bacterial infections: a large-scale case-series retrospective study in 160 domestic animals (2009-2022).	Ribeiro MG, da Silva Ribeiro AB, da Silva ABM, Mariano GHG, de Sa Teles Bertunes L, Portilho FVR, Filho MFA, Bello TS, Meira J, de Lima Paz PJ, Siqueira AK, Motta RG, de Souza Araujo Martins Motta L, Bertolini AB, Giuffrida R, Casteleti AG, Listoni FJP, Paes AC.	Braz J Microbiol	10.1007/s42770-024-01551-3	2024
	Influence of Inoculating Saccharomyces cerevisiae and Levilactobacillus brevis on the Quality of Fermented Large Yellow Croaker (Larimichthys crocea): Biogenic Amines, Volatile Components, and Microbial Communities Changes.	Wu J, Lin N, Yang J, Zhang X, Wu K, You X, Guo Q.	Foods	10.3390/foods14213690	2025
	Stably transmitted defined microbial community in honeybees preserves Hafnia alvei inhibition by regulating the immune system.	Wang J, Lang H, Zhang W, Zhai Y, Zheng L, Chen H, Liu Y, Zheng H.	Front Microbiol	10.3389/fmicb.2022.1074153	2022
	Private and well drinking water are reservoirs for antimicrobial resistant bacteria.	Alawi M, Smyth C, Drissner D, Zimmerer A, Leupold D, Muller D, Do TT, Velasco-Torrijos T, Walsh F.	NPJ Antimicrob Resist	10.1038/s44259-024-00024-9	2024
	Chromogenic hydroxyanthraquinone-based enzyme substrates for the detection of microbial beta-d-galactosidase, beta-d-glucuronidase and beta-d-ribosidase.	Burton M, Garcha A, Marrs ECL, Perry JD, Stanforth SP, Turnbull G, Turner HJ.	RSC Adv	10.1039/d4ra06418f	2025
Metabolism	Strain phylogroup and environmental constraints shape Escherichia coli dynamics and diversity over a 20-year human gut time series.	Condamine B, Morel-Journel T, Tesson F, Royer G, Magnan M, Bernheim A, Denamur E, Blanquart F, Clermont O.	ISME J	10.1093/ismejo/wrae245	2025
Phylogeny	Episyrphus balteatus symbiont variation across developmental stages, living states, two sexes, and potential horizontal transmission from prey or environment.	Chang X, Xue S, Li R, Zhang Y.	Front Microbiol	10.3389/fmicb.2023.1308393	2023
Genetics	The complete genome sequence of Hafnia alvei A23BA; a potential antibiotic-producing rhizobacterium.	Awolope OK, O'Driscoll NH, Di Salvo A, Lamb AJ.	BMC Res Notes	10.1186/s13104-020-05418-2	2021
Cultivation	Evaluation of a novel modified selective medium cefixime-tellurite-phosphate-xylose-rhamnose MacConkey agar for the isolation of Escherichia albertii from diarrheal stool specimens.	Takehira K, Awasthi SP, Hatanaka N, Nagita A, Hinenoya A, Yamasaki S.	J Vet Med Sci	10.1292/jvms.24-0500	2025
	Bacteria and antibiotic resistance detection in fractures of wild birds from wildlife rehabilitation centres in Spain.	Tardon A, Bataller E, Llobat L, Jimenez-Trigos E.	Comp Immunol Microbiol Infect Dis	10.1016/j.cimid.2020.101575	2021
	Identification and Characterization of New Hafnia Strains from Common Carp (Cyprinus carpio), Potentially Possessing Probiotic Properties and Plastic Biodegradation Capabilities.	Dragacevic L, Tsibulskaya D, Kojic M, Rajic N, Niksic A, Popovic M.	Int J Mol Sci	10.3390/ijms26031119	2025
	Role of Microbial Interactions across Food-Related Bacteria on Biofilm Population and Biofilm Decontamination by a TiO₂-Nanoparticle-Based Surfactant.	Doulgeraki AI, Kamarinou CS, Nychas GE, Argyri AA, Tassou CC, Moulas G, Chorianopoulos N.	Pathogens	10.3390/pathogens12040573	2023
Genetics	Multiresistant Enterobacteriaceae in yellow-legged gull chicks in their first weeks of life.	Vittecoq M, Brazier L, Elguero E, Bravo IG, Renaud N, Manzano-Marin A, Prugnolle F, Godreuil S, Blanchon T, Roux F, Durand P, Renaud F, Thomas F.	Ecol Evol	10.1002/ece3.8974	2022
	Inhibitory effect of vanillin on the virulence factors and biofilm formation of Hafnia alvei	Li T, He B, Mei Y, Wang D, Sun X, Li J.	Lebensm Wiss Technol	10.1016/j.lwt.2018.12.038	2019
	Enterobacteriaceae in Sewage Sludge and Digestate Intended for Soil Fertilization.	Wojcik-Fatla A, Farian E, Kowalczyk K, Sroka J, Skowron P, Siebielec G, Zdybel JM, Jadczyszyn T, Cencek T.	Pathogens	10.3390/pathogens13121056	2024
	Laboratory Diagnostic Methods and Antibiotic Resistance Patterns of Staphylococcus aureus and Escherichia coli Strains: An Evolving Human Health Challenge.	Alzaben F, Fat'hi S, Elbehiry A, Alsugair M, Marzouk E, Abalkhail A, Almuzaini AM, Rawway M, Ibrahem M, Sindi W, Alshehri T, Hamada M.	Diagnostics (Basel)	10.3390/diagnostics12112645	2022
	Serological Distribution of Salmonella enterica subsp. Isolated from Feces of Domesticated Crested Gecko (Correlophus ciliates) in Busan Province, South Korea.	Bae IK, Park YK, Park SH, Hong JS.	Life (Basel)	10.3390/life15030405	2025
Genetics	Metagenomics for the microbiological diagnosis of hospital-acquired pneumonia and ventilator-associated pneumonia (HAP/VAP) in intensive care unit (ICU): a proof-of-concept study.	Heitz M, Levrat A, Lazarevic V, Barraud O, Bland S, Santiago-Allexant E, Louis K, Schrenzel J, Hauser S.	Respir Res	10.1186/s12931-023-02597-x	2023
	Global prevalence and antibiotic resistance profiles of bacterial pathogens in table eggs: A systematic review and meta-analysis	Hinson C, Tonouhewa A, Azokpota P, Daube G, Korsak N, Sessou P.	Vet World		2025
	Microbiota-gut-brain axis in health and neurological disease: Interactions between gut microbiota and the nervous system.	He Y, Wang K, Su N, Yuan C, Zhang N, Hu X, Fu Y, Zhao F.	J Cell Mol Med	10.1111/jcmm.70099	2024
	Resistome Diversity and Dissemination of WHO Priority Antibiotic Resistant Pathogens in Lebanese Estuaries.	Hobeika W, Gaschet M, Ploy MC, Buelow E, Sarkis DK, Dagot C.	Antibiotics (Basel)	10.3390/antibiotics11030306	2022
	Catheter-associated Hafnia alvei-induced Urosepsis.	Yarlagadda K, Shrimanker I, Nookala VK.	Cureus	10.7759/cureus.6471	2019
	Disturbance of gut microbiota in diabetes related macroangiopathy: Evidence from the gut bacteriome and mycobiome.	Gou X, Chen Y, Zong Y, Huang X, Shen Y, Wang L, Liu Y, He Y, Jia J, Zhang X, Peng S, Zhou X, Liu Y, Zhang J, Fan G.	iScience	10.1016/j.isci.2025.112856	2025
	What Is the Role of the Gut Microbiota in Anastomotic Leakage After Colorectal Resection? A Scoping Review of Clinical and Experimental Studies.	Lianos GD, Frountzas M, Kyrochristou ID, Sakarellos P, Tatsis V, Kyrochristou GD, Bali CD, Gazouli M, Mitsis M, Schizas D.	J Clin Med	10.3390/jcm13226634	2024
	Quorum-Quenching Activity of Myrtus communis Corsican Essential Oil Against the Marine Bacterium Aliivibrio fischeri.	Hardy E, Poli JP, Bighelli A, Paoli M, Maroselli T, Berti L, Guinoiseau E.	Microorganisms	10.3390/microorganisms13061325	2025
	Cadaverine as a Potential Spoilage Indicator in Skin-Packed Beef and Modified-Atmosphere-Packed Beef.	Thamsborg KKM, Lund BW, Byrne DV, Leisner JJ, Alexi N.	Foods	10.3390/foods12244489	2023
	Escherichia albertii isolated from the bloodstream of a patient with liver cirrhosis in China: A case report.	Liu Q, Wang H, Zhang S, Yan G, Yang X, Bai X, Deng J, Chen X, Zhang L, Zhang J, Wang B, Zou N, Xiong Y, Zhang Z.	Heliyon	10.1016/j.heliyon.2023.e22298	2023
Pathogenicity	Effect of ampC derepression on cefepime MIC in Enterobacterales with chromosomally encoded inducible AmpC beta-lactamase.	Kohlmann R, Bahr T, Gatermann SG.	Clin Microbiol Infect	10.1016/j.cmi.2019.05.007	2019
	The Faecal Microbiome of Building-Dwelling Insectivorous Bats (Myotis myotis and Rhinolophus hipposideros) also Contains Antibiotic-Resistant Bacterial Representatives.	Gerbacova K, Malinicova L, Kiskova J, Maslisova V, Uhrin M, Pristas P.	Curr Microbiol	10.1007/s00284-020-02095-z	2020
Phylogeny	A Comparison of Methods for Identifying Enterobacterales Isolates from Fish and Prawns.	Zakrzewski AJ, Zarzecka U, Chajecka-Wierzchowska W, Zadernowska A.	Pathogens	10.3390/pathogens11040410	2022
Enzymology	Hafnia alvei pneumonia: a rare cause of infection in the multimorbid or immunocompromised.	Begbey A, Guppy JH, Mohan C, Webster S.	BMJ Case Rep	10.1136/bcr-2020-237061	2020
	Antimicrobial resistance among agents of hospital-acquired lower respiratory tract infection in the UK and Ireland: trends from 2008/2009 to 2018/2019.	Reynolds R, Morrissey I, Mushtaq S, Horner C, Adkin R, Chaudhry A, Allen M, Longshaw C, Parcell BJ, Livermore DM.	J Antimicrob Chemother	10.1093/jac/dkaf251	2025
	The role of gut dysbiosis in endometriosis' diagnosis and treatment approaches - case report.	Bausic AIG, Cretoiu SM, Bausic V, Matasariu DR, Stanculescu RV, Bratila E.	Rom J Morphol Embryol	10.47162/rjme.64.2.17	2023
	Utilization of Peripherally Inserted Central Catheters in Neonates Within the Neonatal Intensive Care Unit: A Decadal Single-Center Study.	Fu X, Li Z, Yao L, Haq IU, Wang L, Li L, Hu X.	Cureus	10.7759/cureus.77904	2025
	Evaluation of the Reveal^® AST (SPECIFIC) for Antimicrobial Susceptibility Testing from Positive Blood Culture Spiked with Carbapenem-Resistant Isolates.	Girlich D, Jousset AB, Emeraud C, Rezzoug I, Burwell R, Singh P, Rhodes PA, Naas T, Bonnin RA, Dortet L.	Pathogens	10.3390/pathogens13090722	2024
	High occurrence of heavy metal tolerance genes in bacteria isolated from wastewater: A new concern?	Zagui GS, Moreira NC, Santos DV, Darini ALC, Domingo JL, Segura-Munoz SI, Andrade LN.	Environ Res	10.1016/j.envres.2020.110352	2021
	The Gram-Negative Bacilli Isolated from Caves-Sphingomonas paucimobilis and Hafnia alvei and a Review of Their Involvement in Human Infections.	Ionescu MI, Neagoe DS, Craciun AM, Moldovan OT.	Int J Environ Res Public Health	10.3390/ijerph19042324	2022
Pathogenicity	Effects of Sulfide Flavors on AHL-Mediated Quorum Sensing and Biofilm Formation of Hafnia alvei.	Hongman H, Yifang W, Gongliang Z, Yaolei Z, Longquan X, Hongshun H, Yue W, Meishan L.	J Food Sci	10.1111/1750-3841.14345	2018
	Rouxiella badensis, a new bacterial pathogen of onion causing bulb rot.	Zhao M, Tyson C, Gitaitis R, Kvitko B, Dutta B.	Front Microbiol	10.3389/fmicb.2022.1054813	2022
Pathogenicity	The occurrence of Salmonella, extended-spectrum beta-lactamase producing Escherichia coli and carbapenem resistant non-fermenting Gram-negative bacteria in a backyard poultry flock environment.	Shah DH, Board MM, Crespo R, Guard J, Paul NC, Faux C.	Zoonoses Public Health	10.1111/zph.12756	2020
	Misleading Diagnostics After a Presumed Recovery of Gallstone Spillage.	Arbogast M, Nebiker CA.	J Surg Res (Houst)	10.26502/jsr.10020084	2020
	Bacterium Hafnia alvei secretes l-methioninase enzyme: Optimization of the enzyme secretion conditions.	Alshehri WA.	Saudi J Biol Sci	10.1016/j.sjbs.2020.02.008	2020
	Bacteriological Identification, Characterization and Changes of Feces Microbiome in Prostate Cancer Patients Undergoing Radiotherapy.	Florkiewicz AB, Fijalkowski P, Fijalkowski P, Zloch M, Ludwiczak A, Gabrys D, Mista W, Mrochem-Kwarciak J, Jedrzejewska A, Telka E, Rabsztyn M, Czeszewska-Rosiak G, Mametov R, Tretyn A, Pomastowski P.	Cancer Manag Res	10.2147/cmar.s517416	2025
Phylogeny	An Insight into Goat Cheese: The Tales of Artisanal and Industrial Gidotyri Microbiota.	Nelli A, Venardou B, Skoufos I, Voidarou CC, Lagkouvardos I, Tzora A.	Microorganisms	10.3390/microorganisms11010123	2023
	Epidemiology of biliary tract-associated bloodstream infections and adequacy of empiric therapy: an Australian population-based study.	Gassiep I, Edwards F, Laupland KB.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-024-04894-9	2024
	Role of preoperative gut microbiota on colorectal anastomotic leakage: preliminary results.	Palmisano S, Campisciano G, Iacuzzo C, Bonadio L, Zucca A, Cosola D, Comar M, de Manzini N.	Updates Surg	10.1007/s13304-020-00720-x	2020
Pathogenicity	Profiling of VOCs released from different salivary bacteria treated with non-lethal concentrations of silver nitrate.	Milanowski M, Monedeiro F, Zloch M, Ratiu IA, Pomastowski P, Ligor T, De Martinis BS, Buszewski B.	Anal Biochem	10.1016/j.ab.2019.05.007	2019
Biotechnology	Biogenic amines' residues in meat products with a reference to their microbial status.	Elgaffry O, Darwish WS, El Bayoumi RM, Hussein MA, Megahed A, Reda LM, Basiony A, Dawod YF.	Open Vet J	10.5455/ovj.2024.v14.i6.7	2024
	Specific Strains of Honeybee Gut Lactobacillus Stimulate Host Immune System to Protect against Pathogenic Hafnia alvei.	Lang H, Duan H, Wang J, Zhang W, Guo J, Zhang X, Hu X, Zheng H.	Microbiol Spectr	10.1128/spectrum.01896-21	2022
	Detection of Acipenser European Iridovirus (AcIV-E) in Sturgeon Farms in Northern Italy between 2021-2023.	Bondavalli F, Schleicherova D, Pastorino P, Mugetti D, Pedron C, Prearo M.	Viruses	10.3390/v16030465	2024
	Electropolymerized polypyrrole-MOF composite as a coating material for SPME fiber for extraction VOCs liberated by bacteria.	Mametov R, Sagandykova G, Monedeiro-Milanowski M, Gabrys D, Pomastowski P.	Sci Rep	10.1038/s41598-023-36081-9	2023
	Culturomics Profiling of Nasal Cavities of European Wild Rabbits on the Iberian Peninsula: Antimicrobial Resistance and Detection of Microorganisms of Public Health Interest.	Gonzalez-Azcona C, Jimenez-Ruiz S, Santos N, Del Campo-Fernandez I, Rojas-Tigasi K, Alvarez-Gomez T, Maranon-Clemente I, Eguizabal P, Abdullahi IN, Alonso CA, Torres C, Lozano C.	Pathogens	10.3390/pathogens14040317	2025
	An In-Silico Investigation to Design a Multi-Epitopes Vaccine against Multi-Drug Resistant Hafnia alvei.	Alshabrmi FM, Alrumaihi F, Alrasheedi SF, Al-Megrin WAI, Almatroudi A, Allemailem KS.	Vaccines (Basel)	10.3390/vaccines10071127	2022
	Antimicrobial activity of carbon dots against aquatic spoilage Bacteria synthesized from Banana Peel waste.	Meng Y, Zhu H, Li X, Zhao S, Ma K, Li T.	Food Chem X	10.1016/j.fochx.2025.102375	2025
	Intrinsic Resistance to Colistin in the Genus Hafnia.	Turbett SE, Bronson RA, Worby CJ, McGrath GEG, Hodgkins E, Becker M, Belford B, Kogut L, Oliver E, Ryan ET, LaRocque RC, Earl AM, Pierce VM.	J Clin Microbiol	10.1128/jcm.01326-22	2023
	Oxacillin-Supplemented Mueller-Hinton Agar for In Vitro Inhibition of Ambler Class C beta-Lactamases in Enterobacterales.	Chelaru EC, Muntean AA, Muntean MM, Hogea MO, Caracoti CS, Ciomaga BF, Naas T, Popa MI.	Antibiotics (Basel)	10.3390/antibiotics14060616	2025
	Toward the Adoption of Loop-Mediated Isothermal Amplification for Salmonella Screening at the National Antimicrobial Resistance Monitoring System's Retail Meat Sites.	Young SR, Domesle KJ, McDonald RC, Lozinak KA, Laksanalamai P, Harrell E, Thakur S, Kabera C, Strain EA, McDermott PF, Ge B.	Foodborne Pathog Dis	10.1089/fpd.2022.0047	2022
	The Molecular Weaponry Produced by the Bacterium Hafnia alvei in Foods.	Ramos-Vivas J, Tapia O, Elexpuru-Zabaleta M, Pifarre KT, Armas Diaz Y, Battino M, Giampieri F.	Molecules	10.3390/molecules27175585	2022
Phylogeny	Identification of bacteria associated with periapical abscesses of primary teeth by sequence analysis of 16S rDNA clone libraries.	Zhang W, Chen Y, Shi Q, Hou B, Yang Q.	Microb Pathog	10.1016/j.micpath.2019.103954	2020
Enzymology	Yokenella regensburgei necrotizing fasciitis in an immunocompromised host.	Wright WF, Utz JL, Bruckhart C, Baghli S, Janda JM.	J Infect Chemother	10.1016/j.jiac.2019.03.025	2019
	Occurrence of foodborne pathogens in Italian soft artisanal cheeses displaying different intra- and inter-batch variability of physicochemical and microbiological parameters.	Pasquali F, Valero A, Possas A, Lucchi A, Crippa C, Gambi L, Manfreda G, De Cesare A.	Front Microbiol	10.3389/fmicb.2022.959648	2022
	Design of microbial consortia for the fermentation of pea-protein-enriched emulsions.	Ben-Harb S, Saint-Eve A, Panouille M, Souchon I, Bonnarme P, Dugat-Bony E, Irlinger F.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2019.01.012	2019
Biotechnology	Determination of Histamine in Japanese Spanish Mackerel (Scomberomorus niphonius) Meat Implicated in a Foodborne Poisoning.	Hwang CC, Tseng PH, Lee YC, Kung HF, Huang CY, Chen HC, Tsai YH.	J Food Prot	10.4315/0362-028x.jfp-19-111	2019
	Activity of meropenem/vaborbactam and comparators against non-carbapenemase-producing carbapenem-resistant Enterobacterales isolates from Europe.	Shortridge D, Deshpande LM, Streit JM, Castanheira M.	JAC Antimicrob Resist	10.1093/jacamr/dlac097	2022
	Comparison of BD Phoenix and disk diffusion to broth microdilution for determining cefepime susceptibility among carbapenem-resistant Enterobacterales.	Fouad A, Simner PJ, Nicolau DP, Asempa TE.	J Clin Microbiol	10.1128/jcm.01520-23	2024
	Pathogenic Potential of Opportunistic Gram-Negative Bacteria Isolated from the Cloacal Microbiota of Free-Living Reptile Hosts Originating from Bulgaria.	Lazarkevich I, Engibarov S, Mitova S, Popova S, Vacheva E, Stanchev N, Eneva R, Gocheva Y, Lalovska I, Paunova-Krasteva T, Ilieva Y, Najdenski H.	Life (Basel)	10.3390/life14050566	2024
	PACT - Prediction of amyloid cross-interaction by threading.	Wojciechowski JW, Szczurek W, Szulc N, Szefczyk M, Kotulska M.	Sci Rep	10.1038/s41598-023-48886-9	2023
	Profiling of the tumor-associated microbiome in patients with hepatocellular carcinoma.	Schulz C, Vilchez-Vargas R, Ocal E, Koch N, Puhr-Westerheide D, Burnell LF, Hirner-Eppeneder H, Benckert J, Pech M, Reimer P, Verslype C, Kuhl C, Tran A, Ricke J, Malfertheiner P, Alunni-Fabbroni M.	Gut Pathog	10.1186/s13099-025-00727-y	2025
	Slow-growing Salmonella enterica serovariety Typhi mis-identified as serovariety Gallinarum in Ibadan, Nigeria.	Sunmonu GT, Ogunleye VO, Ikhimiukor OO, Popoola OA, Osadebamwen PE, Kehinde A, Okeke IN.	PLOS Glob Public Health	10.1371/journal.pgph.0004745	2025
	Cases of Isolation of Escherichia albertii Strains from Commercial Quails with Gastroenteritis in Russia.	Teymurazov MG, Kartsev NN, Abaimova AA, Tazina OI, Skryabin YP, Khokhlova OE.	Microorganisms	10.3390/microorganisms13040816	2025
	Influence of Essential Oils on the Microbiological Quality of Fish Meat during Storage.	Kunova S, Sendra E, Hascik P, Vukovic NL, Vukic M, Kacaniova M.	Animals (Basel)	10.3390/ani11113145	2021
	Plastic pollution in agricultural landscapes: an overlooked threat to pollination, biocontrol and food security.	Sheng D, Jing S, He X, Klein AM, Kohler HR, Wanger TC.	Nat Commun	10.1038/s41467-024-52734-3	2024
	Postmortem Findings in Free-Ranging North American Beavers (Castor canadensis) Reveal Potential Threats to California's Freshwater Ecosystems.	Gonzales-Viera OA, Woods LW, Mete A, Fritz H, Armien AG, Lantz E, Gomez-Puerta LA, Famini D, Sherman J, Rudd JL, Camp LE, Shapiro K, Clifford DL.	Animals (Basel)	10.3390/ani15030338	2025
	Systematic review and meta-analysis of the prevalence and types of health care associated infections in Nigeria.	Onwuliri CD, Ezebialu IU, Adebisi A, Eleje GU, Akinola B, Ezebialu CU, Abdullahi K, Okoro B, Okoroafor C, John O, Gadanya M, Alombah F, Okechukwu E, Swomen H, Okwor TJ.	BMC Infect Dis	10.1186/s12879-025-11246-1	2025
	Third-Generation Cephalosporin Resistance in Intrinsic Colistin-Resistant Enterobacterales Isolated from Retail Meat.	Odoi JO, Takayanagi S, Yossapol M, Sugiyama M, Asai T.	Antibiotics (Basel)	10.3390/antibiotics10121437	2021
	A Microbiological and Sensory Evaluation of Modified Atmosphere-Packed (MAP) Chicken at Use-By Date and Beyond.	Soderqvist K, Peterson M, Johansson M, Olsson V, Boqvist S.	Foods	10.3390/foods13132140	2024
	Gardnerella vaginalis Is a Rare Cause of Ventilator-Associated Pneumonia: A Case Report and Literature Review.	Ait Tamlihat Y, Augereau PF, Lardillon G, Violette J.	J Med Cases	10.14740/jmc3645	2021
	SARS-CoV-2 infection: a possible trigger for the recurrence of IgA nephropathy after kidney transplantation?	Jankowski E, Schlosser M, Wiech T, Wolf G, Busch M.	J Nephrol	10.1007/s40620-023-01684-y	2023
	Evidence for wastewaters as environments where mobile antibiotic resistance genes emerge.	Berglund F, Ebmeyer S, Kristiansson E, Larsson DGJ.	Commun Biol	10.1038/s42003-023-04676-7	2023
	[A descriptive study of Hafnia alvei isolated from stool samples: an approach to its clinical assessment].	de Frutos M, Lopez E, Aragon R, Lopez-Urrutia L, Ramos C, Dominguez-Gil M, Vinuela L, Garcinuno S, Eiros JM.	Rev Esp Quimioter		2017
	Pathogenic potential of amoxicillin-clavulanic acid resistant Klebsiella pneumoniae isolated from aquatic environment: a study of multidrug resistance and virulence.	Ahmed V, Siddiqui MT, Ali A, Rizvi SA, Saif M, Ahmed S, Haq QMR.	BMC Infect Dis	10.1186/s12879-025-11806-5	2025
	Mechanistic insights into accelerated alpha-synuclein aggregation mediated by human microbiome-associated functional amyloids.	Bhoite SS, Han Y, Ruotolo BT, Chapman MR.	J Biol Chem	10.1016/j.jbc.2022.102088	2022
	Isolation and molecular characterization of the Salmonella Typhimurium orphan phage Arash.	Yousefi MH, Wagemans J, Shekarforoush SS, Vallino M, Pozhydaieva N, Hofer K, Lavigne R, Hosseinzadeh S.	BMC Microbiol	10.1186/s12866-023-03056-9	2023
	Chronic Exposure to Polystyrene Microplastic Fragments Has No Effect on Honey Bee Survival, but Reduces Feeding Rate and Body Weight.	Al Naggar Y, Sayes CM, Collom C, Ayorinde T, Qi S, El-Seedi HR, Paxton RJ, Wang K.	Toxics	10.3390/toxics11020100	2023
	No Emergence of Colistin Resistance in the Respiratory Tract of Lung Transplant Patients Treated With Inhaled Colistin.	Grall N, Assadi M, Esposito-Farese M, Lortat-Jacob B, Tanaka S, Atchade E, Messika J, Bunel V, Mal H, Mordant P, Castier Y, Garnier B, Gueye S, Petitjean M, Denamur E, Armand-Lefevre L, Burdet C, Montravers P, Tran-Dinh A.	Transpl Int	10.3389/ti.2024.13545	2024
	Foodborne Lactic Acid Bacteria Inactivate Planktonic and Sessile Escherichia coli O157:H7 in a Meat Processing Environment: A Physiological and Proteomic Study.	Cisneros L, Baillo AA, Ploper D, Valacco MP, Moreno S, Yantorno O, Fusco V, Fadda S.	Foods	10.3390/foods14213670	2025
	Reactive arthritis secondary to Hafnia alvei enterocolitis.	Erre GL, Colombo E, Bibbo S, Dore MP.	BMJ Case Rep	10.1136/bcr-2018-228513	2019
	Impact of Male Patient Information on Quality of Urine Examination (PIQUE Study).	Spachmann PJ, Rupp C, Fritsche HM, Denzinger S, Burger M, Breyer J, Otto W, Schnabel MJ.	Urol Int	10.1159/000517783	2022
	Salmonella Detection in Food Using a HEK-hTLR5 Reporter Cell-Based Sensor.	Eser E, Felton VA, Drolia R, Bhunia AK.	Biosensors (Basel)	10.3390/bios14090444	2024
	Quorum Quenching Enzyme (PF-1240) Capable to Degrade AHLs as a Candidate for Inhibiting Quorum Sensing in Food Spoilage Bacterium Hafnia alvei.	Shen Y, Cui F, Wang D, Li T, Li J.	Foods	10.3390/foods10112700	2021
	Antibiotic definitive treatment in ventilator associated pneumonia caused by AmpC-producing Enterobacterales in critically ill patients: a prospective multicenter observational study.	Petit M, Bidar F, Fosse Q, Lefevre L, Paul M, Urbina T, Masi P, Bavozet F, Lemarie J, de Montmollin E, Andriamifidy-Berti C, Dessajan J, Zuber B, Zafrani L, Peju E, Meng P, Charrier L, Le Guennec L, Simon M, Luyt CE, Haudebourg L, Geri G.	Crit Care	10.1186/s13054-024-04820-7	2024
	Looking for ESKAPE Bacteria: Occurrence and Phenotypic Antimicrobial Resistance Profiles in Wild Birds from Northern and Central Italy Sites.	Grilli G, Rapi MC, Musa L, Di Giacinto G, Passamonti F, Raimondi S, Cianca O, Franciosini MP.	Antibiotics (Basel)	10.3390/antibiotics14101025	2025
	Effect of dairy matrices on the survival of Streptococcus thermophilus, Brevibacterium aurantiacum and Hafnia alvei during digestion.	Hernandez-Galan L, Cattenoz T, Le Feunteun S, Canette A, Briandet R, Le-Guin S, Guedon E, Castellote J, Delettre J, Dugat Bony E, Bonnarme P, Spinnler HE, Martin Del Campo ST, Picque D.	Food Res Int	10.1016/j.foodres.2017.07.044	2017
	A 12-Week, Randomized, Double-Blind, Placebo-Controlled Study to Evaluate the Efficacy and Safety of Lactobacillus plantarum LMT1-48 on Body Fat Loss.	Lee SB, Yoo B, Baeg C, Yun J, Ryu DW, Kim G, Kim S, Shin H, Lee JH.	Nutrients	10.3390/nu17071191	2025
	Controlling of foodborne pathogen biofilms on stainless steel by bacteriophages: A systematic review and meta-analysis.	Azari R, Yousefi MH, Fallah AA, Alimohammadi A, Nikjoo N, Wagemans J, Berizi E, Hosseinzadeh S, Ghasemi M, Mousavi Khaneghah A.	Biofilm	10.1016/j.bioflm.2023.100170	2024
	Characterization of YdgH: a mediator of beta-lactam susceptibility in Enterobacterales.	Lazarus JE, Waldor MK, Hooper DC.	Microbiol Spectr	10.1128/spectrum.01940-24	2025
	Monitoring of volatile production in cooked poultry products using selected ion flow tube-mass spectrometry.	Geeraerts W, De Vuyst L, Leroy F, Van Kerrebroeck S.	Food Res Int	10.1016/j.foodres.2019.01.063	2019
	Inhibition of Hafnia alvei H4 Biofilm Formation by the Food Additive Dihydrocoumarin.	Hou HM, Jiang F, Zhang GL, Wang JY, Zhu YH, Liu XY.	J Food Prot	10.4315/0362-028x.jfp-16-460	2017
	High oral carriage of multidrug resistant Gram-negative bacilli in adolescents: the SOPKARD-Junior study.	Katkowska M, Garbacz K, Kwapisz E, Suligowska K, Kusiak A, Cichonska D, Swietlik D.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1265777	2023
	Rapid Detection of Ceftazidime/Avibactam Susceptibility/Resistance in Enterobacterales by Rapid CAZ/AVI NP Test.	Nordmann P, Bouvier M, Delaval A, Tinguely C, Poirel L, Sadek M.	Emerg Infect Dis	10.3201/eid3002.221398	2024
	Inhibition of Several Bacterial Species Isolated from Squid and Shrimp Skewers by Different Natural Edible Compounds.	Pinto de Rezende L, Barbosa JB, Gomes AM, Silva AM, Correia DF, Teixeira P.	Foods	10.3390/foods11050757	2022
Genetics	The Gut Microbiome of the Asiatic Toad (Bufo gargarizans) Reflects Environmental Changes and Human Activities.	Kang X, Shao M, Jiang J, He L, Lu Y, Song J, Xu J, Fan Z.	Ecol Evol	10.1002/ece3.71394	2025
	Emergence of microbial infections in some hospitals of Cairo, Egypt: studying their corresponding antimicrobial resistance profiles.	Helmy AK, Sidkey NM, El-Badawy RE, Hegazi AG.	BMC Infect Dis	10.1186/s12879-023-08397-4	2023
Phylogeny	First report of Yokenella regensburgei isolated from external auditory canal after diving in valley.	Na G, Song JE, Chang J.	Clin Case Rep	10.1002/ccr3.5177	2021
Enzymology	Seasonal recovery of Edwardsiella piscicida from wild European eels and natural waters: Isolation methods, virulence and reservoirs.	Esteve C, Alcaide E.	J Fish Dis	10.1111/jfd.12867	2018
	A catalog of ethanol-producing microbes in humans.	Mbaye B, Wasfy RM, Alou MT, Borentain P, Gerolami R, Dufour JC, Million M.	Future Microbiol	10.2217/fmb-2023-0250	2024
	Phenolic constituents in pepper (Piper nigrum L.) berries: UPLC-MS/MS analysis, antioxidant properties, antibacterial activity against Pseudomonas fragi and association analyzed by WCGNA.	Fang Y, Wu G, Ding Y, Niu Z, Feng J, Guo R, He S, Wang X, Zhu H, Dong W, Hu W, Jiang X, Gu F.	Food Chem X	10.1016/j.fochx.2025.102810	2025
	Microbiological Quality and Safety of Fresh Turkey Meat at Retail Level, Including the Presence of ESBL-Producing Enterobacteriaceae and Methicillin-Resistant S. aureus.	Martinez-Laorden A, Arraiz-Fernandez C, Gonzalez-Fandos E.	Foods	10.3390/foods12061274	2023
	Differential Recognition of Lipopolysaccharide O-Antigens by the Pattern Recognition Molecules MBL and Ficolins of the Complement System.	Hymoller KM, Crone L, Thiel S, Hennet T.	J Innate Immun	10.1159/000547441	2025
	Improving the accuracy of coliform detection in meat products using modified dry rehydratable film method.	Kang JY, Lee SH, Jo AH, Park EJ, Bak YS, Kim JB.	Food Sci Biotechnol	10.1007/s10068-020-00778-8	2020
Enzymology	Bacteria in Abnormal Eggs of Chinese Giant Salamanders (Andrias davidianus) May Derive from Gut.	Yang C, Gao H, Gao Y, Yang C, Dong W.	Zoolog Sci	10.2108/zs180013	2018
	Yokenella regensburgei infection in an immunocompetent individual after trauma following a fall from a personal conveyance.	AlMutawa F, Kim SH, Cabrera A, Delport J.	J Assoc Med Microbiol Infect Dis Can	10.3138/jammi-2022-0018	2023
	Production optimization of a thermostable alkaline and detergent biocompatible protease by Bacillus paramycoides WSA for the green detergent industry.	Alshehri WA, Alhothifi SA, Khalel AF, Alqahtani FS, Hadrich B, Sayari A.	Sci Rep	10.1038/s41598-025-98094-w	2025
	Risk factors for predicting extended-spectrum beta-lactamase-producing Enterobacterales (ESBLE) infections in non-urinary isolates.	Burgoon R, Hamby A, Weeda E, Raux BR, Hornback KM.	Antimicrob Steward Healthc Epidemiol	10.1017/ash.2023.201	2023
Phylogeny	Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics.	Zhou J, Liu Y, Gu T, Zhou J, Chen F, Li S.	mSystems	10.1128/msystems.01463-24	2025
	A Case of Pancreatic Duct Leak Presenting as Lower Extremity Pain and Edema.	Murthi M, Abusalim A, Haque Z, Acob C.	Cureus	10.7759/cureus.18839	2021
	Microbiological Quality of Organic and Conventional Leafy Vegetables	Merlini VV, Pena FdL, da Cunha DT, de Oliveira JM, Rostagno MA, Antunes AEC.	J Food Qual		2018
Metabolism	Early blowing in raw goats' milk cheese: gas production capacity of Enterobacteriaceae species present during manufacturing and ripening.	Tabla R, Gomez A, Simancas A, Rebollo JE, Molina F, Roa I.	J Dairy Res	10.1017/s0022029918000511	2018
Genetics	Whole-genome-based characterization of Escherichia albertii strains isolated from paediatric diarrhoeal cases in Kolkata, India.	Chowdhury G, Hoshiko Y, Okuno M, Kitahara K, Albert MJ, Miyoshi SI, Ogura Y, Dutta S, Ramamurthy T, Mukhopadhyay AK.	Microb Genom	10.1099/mgen.0.001363	2025
	Microbiological and Physicochemical Approach in the Feeding of Superworm (Zophobas morio) with Petroleum-Derived Polymer Diets.	Burgos BR, Morales F, Morales-Vera R, Valdes C, Faundez JY, Souza EP, Henrique-Silva F, Arencibia AD.	Microorganisms	10.3390/microorganisms12112118	2024
	Impact of non-nutritive sweeteners on bacterial quorum sensing and phenotypic expression: implications for gut microbiome dynamics.	Watawana M, Lima EMF, Quecan BXV, Sherry M, Granato D, Schmalenberger A, Hoffmann C, Pinto UM, Hoffmann Sarda FA.	Gut Microbiome (Camb)	10.1017/gmb.2025.10006	2025
	Egg Yolk as a New Source of Peptides with Antioxidant and Antimicrobial Properties.	Czelej M, Czernecki T, Garbacz K, Wawrzykowski J, Jamiol M, Michalak K, Walczak N, Wilk A, Wasko A.	Foods	10.3390/foods12183394	2023
Pathogenicity	Investigation of urban birds as source of beta-lactamase-producing Gram-negative bacteria in Marseille city, France.	Ngaiganam EP, Pagnier I, Chaalal W, Leangapichart T, Chabou S, Rolain JM, Diene SM.	Acta Vet Scand	10.1186/s13028-019-0486-9	2019
Biotechnology	Mapping the dominant microbial species diversity at expiration date of raw meat and processed meats from equine origin, an underexplored meat ecosystem, in the Belgian retail.	Geeraerts W, De Vuyst L, Leroy F.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2018.09.019	2019
Enzymology	Study of the spread of antimicrobial-resistant Enterobacteriaceae from wild mammals in the National Park of Aspromonte (Calabria, Italy).	Foti M, Siclari A, Mascetti A, Fisichella V.	Environ Toxicol Pharmacol	10.1016/j.etap.2018.08.016	2018
	High Prevalence of Enterobacterales in the Smear of Surface-Ripened Cheese with Contribution to Organoleptic Properties.	Ritschard JS, Van Loon H, Amato L, Meile L, Schuppler M.	Foods	10.3390/foods11030361	2022
	Species-specific mutation rates for ampC derepression in Enterobacterales with chromosomally encoded inducible AmpC beta-lactamase.	Kohlmann R, Bahr T, Gatermann SG.	J Antimicrob Chemother	10.1093/jac/dky084	2018
Biotechnology	Assertiveness of meat-borne Lactococcus piscium strains and their potential for competitive exclusion of spoilage bacteria in situ and in vitro.	Hilgarth M, Nani M, Vogel RF.	J Appl Microbiol	10.1111/jam.13710	2018
	Improved Molecular Diagnosis and Culture of the Emerging Heteropathotype Enterohemorrhagic Escherichia coli O80:H2 Using Its Non-Melibiose-Fermenting and Antibiotic-Resistance Properties.	Bizot E, Cointe A, Smadja N, Sergentet D, Lefevre S, Weill FX, Levy C, Cohen R, Mariani-Kurkdjian P, Bonacorsi S.	J Clin Microbiol	10.1128/jcm.01530-21	2022
	Plasmid-Mediated AmpC (pAmpC) Genotypes Among Uropathogenic Escherichia coli: A Hospital-Based Study From Western Uttar Pradesh.	Rehana I, Pandey A, Singh P.	Cureus	10.7759/cureus.41551	2023
Genetics	Effect of the luxI/R gene on AHL-signaling molecules and QS regulatory mechanism in Hafnia alvei H4.	Li X, Zhang G, Zhu Y, Bi J, Hao H, Hou H.	AMB Express	10.1186/s13568-019-0917-z	2019
	High prevalence of multidrug-resistant Enterobacterales carrying extended-spectrum beta-lactamase and AmpC genes isolated from neonatal sepsis in Ahvaz, Iran.	Mansouri S, Savari M, Malakian A, Abbasi Montazeri E.	BMC Microbiol	10.1186/s12866-024-03285-6	2024
Genetics	Diversity of Salmonella enterica phages isolated from chicken farms in Kenya.	Gunathilake KMD, Makumi A, Loignon S, Tremblay D, Labrie S, Svitek N, Moineau S.	Microbiol Spectr	10.1128/spectrum.02729-23	2024
	Resisting the Final Line: Phenotypic Detection of Resistance to Last-Resort Antimicrobials in Gram-Negative Bacteria Isolated from Wild Birds in Northern Italy	Rapi M, Filipe J, Filippone Pavesi L, Raimondi S, Addis M, Franciosini M, Grilli G.	Animals (Basel)		2025
Pathogenicity	Commensal Hafnia alvei strain reduces food intake and fat mass in obese mice-a new potential probiotic for appetite and body weight management.	Legrand R, Lucas N, Dominique M, Azhar S, Deroissart C, Le Solliec MA, Rondeaux J, Nobis S, Guerin C, Leon F, do Rego JC, Pons N, Le Chatelier E, Ehrlich SD, Lambert G, Dechelotte P, Fetissov SO.	Int J Obes (Lond)	10.1038/s41366-019-0515-9	2020
Genetics	A metagenomic approach to One Health surveillance of antimicrobial resistance in a UK veterinary centre	Elton L, Mateos A, Frosini S, Jepson R, Rofael S, McHugh T, Wey E.	Microb Genom		2025
Phylogeny	Culture-dependent and metagenomic analysis of lesser horseshoe bats' gut microbiome revealing unique bacterial diversity and signatures of potential human pathogens.	Selvin J, Lanong S, Syiem D, De Mandal S, Kayang H, Kumar NS, Kiran GS.	Microb Pathog	10.1016/j.micpath.2019.103675	2019
	Iron-based microbial interactions: the role of iron metabolism in the cheese ecosystem.	Mekuli R, Shoukat M, Dugat-Bony E, Bonnarme P, Landaud S, Swennen D, Herve V.	J Bacteriol	10.1128/jb.00539-24	2025
	A Bacteriological Comparison of the Hemolymph from Healthy and Moribund Unionid Mussel Populations in the Upper Midwestern U.S.A. Prompts the Development of Diagnostic Assays to Detect Yokenella regensburgei.	Leis EM, Dziki S, Standish I, Waller D, Richard J, Weinzinger J, Harris C, Knowles S, Goldberg T.	Microorganisms	10.3390/microorganisms11041068	2023
Phylogeny	Microbiology and foodborne pathogens in honey.	Grabowski NT, Klein G.	Crit Rev Food Sci Nutr	10.1080/10408398.2015.1029041	2017
	Characterization of attachment and biofilm formation by meat-borne Enterobacteriaceae strains associated with spoilage	Wang H, Qi J, Dong Y, Li Y, Xu X, Zhou G.	Lebensm Wiss Technol	10.1016/j.lwt.2017.08.025	2017
	Exploring the Role of Berberine as a Molecular Disruptor in Antimicrobial Strategies.	Duda-Madej A, Viscardi S, Bazan H, Sobieraj J.	Pharmaceuticals (Basel)	10.3390/ph18070947	2025
	Real-world performance of susceptibility testing for cefiderocol: insights from a prospective multicentre study on Gram-negative bacteria.	Irigoyen-von-Sierakowski A, Ocana A, Sanchez-Mayoral R, Cercenado E, GEIRAS-SEIMC Study Group .	JAC Antimicrob Resist	10.1093/jacamr/dlae169	2024
	Deoxyshikonin: a promising lead drug grass against drug resistance or sensitivity to Helicobacter pylori in an acidic environment.	Xu J-y, Dong H-h, Liao L-j, Yang S-x, Wang L-y, Chen H, Luo P, Huang L, Guan A-x, Huang Y-Q.	Antimicrob Agents Chemother	10.1128/aac.00959-24	2024
	Current Insights: The Impact of Gut Microbiota on Postoperative Complications in Visceral Surgery-A Narrative Review.	Lederer AK, Chikhladze S, Kohnert E, Huber R, Muller A.	Diagnostics (Basel)	10.3390/diagnostics11112099	2021
Pathogenicity	The Probiotic Strain H. alvei HA4597^® Improves Weight Loss in Overweight Subjects under Moderate Hypocaloric Diet: A Proof-of-Concept, Multicenter Randomized, Double-Blind Placebo-Controlled Study.	Dechelotte P, Breton J, Trotin-Picolo C, Grube B, Erlenbeck C, Bothe G, Fetissov SO, Lambert G.	Nutrients	10.3390/nu13061902	2021
Genetics	The distribution variation of pathogens and virulence factors in different geographical populations of giant pandas.	Zhao M, Li Y, Wei W, Zhang Z, Zhou H.	Front Microbiol	10.3389/fmicb.2023.1264786	2023
	Hafnia alvei: A new pathogen in open fractures.	Litrenta J, Oetgen M.	Trauma Case Rep	10.1016/j.tcr.2017.01.019	2017
	Eosinophilic pneumonia caused by cefepime: A case report and review.	Jones BM, Murray EY, Crosby C, Rojas S, Bland CM.	IDCases	10.1016/j.idcr.2021.e01166	2021
	Hafnia alvei HA4597 Strain Reduces Food Intake and Body Weight Gain and Improves Body Composition, Glucose, and Lipid Metabolism in a Mouse Model of Hyperphagic Obesity.	Lucas N, Legrand R, Deroissart C, Dominique M, Azhar S, Le Solliec MA, Leon F, do Rego JC, Dechelotte P, Fetissov SO, Lambert G.	Microorganisms	10.3390/microorganisms8010035	2019
	Distribution of Antibiotic-Resistant Enterobacteriaceae Pathogens in Potable Spring Water of Eastern Indian Himalayas: Emphasis on Virulence Gene and Antibiotic Resistance Genes in Escherichia coli.	Singh AK, Das S, Kumar S, Gajamer VR, Najar IN, Lepcha YD, Tiwari HK, Singh S.	Front Microbiol	10.3389/fmicb.2020.581072	2020
Metabolism	Quorum Sensing-Mediated and Growth Phase-Dependent Regulation of Metabolic Pathways in Hafnia alvei H4.	Yan C, Li X, Zhang G, Zhu Y, Bi J, Hao H, Hou H.	Front Microbiol	10.3389/fmicb.2021.567942	2021
	Research status and development trends of probiotics in clinical applications.	Li Y, Yao Y, Zhang Z, Gan Y.	Front Nutr	10.3389/fnut.2025.1650883	2025
	Exploring the differences between sole silages of gramineous forages and mixed silages with forage legumes using 16S/ITS full-length sequencing.	Lai X, Wang H, Yan J, Zhang Y, Yan L.	Front Microbiol	10.3389/fmicb.2023.1120027	2023
	Optimization of 1,3-propanediol production from fermentation of crude glycerol by immobilized Bacillus pumilus.	Pinyaphong P, La-Up A.	Heliyon	10.1016/j.heliyon.2024.e35349	2024
	A Simulation of the Real-Time Shelf Life of Frozen Fish Products in a Bulk System Sale.	Dottori I, Urbani S, Daidone L, Bonucci A, Beccerica M, Selvaggini R, Sordini B, Branciari R, Veneziani G, Nucciarelli D, Taticchi A, Servili M, Esposto S.	Foods	10.3390/foods14081334	2025
Pathogenicity	Hafnia, an enterobacterial genus naturally resistant to colistin revealed by three susceptibility testing methods.	Jayol A, Saly M, Nordmann P, Menard A, Poirel L, Dubois V.	J Antimicrob Chemother	10.1093/jac/dkx154	2017
	Assessing hygiene indicators in two dairies in Algeria in producing pasteurized milk.	Souad R, Mossadak HT, Leila B.	Vet World	10.14202/vetworld.2021.2317-2324	2021
	Systemic Bacterial Infection in a Captive Agouti (Dasyprocta leporina Linnaeus, 1758).	Jones KR, Lall KR, Suepaul R, Garcia GW.	ScientificWorldJournal	10.1155/2022/8300247	2022
	Bactericidal effect of plasma-activated water generated by a novel super-potable plasma device as a novel antibacterial method: an in vitro study	Li Y, Liu Y, Yu X, Zhang F, Ma R, Wang R, Wang Z.	BMC Oral Health		2025
Genetics	Metagenomic Investigation of Intestinal Microbiota of Insectivorous Synanthropic Bats: Densoviruses, Antibiotic Resistance Genes, and Functional Profiling of Gut Microbial Communities.	Popov IV, Manakhov AD, Gorobets VE, Diakova KB, Lukbanova EA, Malinovkin AV, Venema K, Ermakov AM, Popov IV.	Int J Mol Sci	10.3390/ijms26135941	2025
	The Obesity-Related Gut Bacterial and Viral Dysbiosis Can Impact the Risk of Colon Cancer Development.	Campisciano G, de Manzini N, Delbue S, Cason C, Cosola D, Basile G, Ferrante P, Comar M, Palmisano S.	Microorganisms	10.3390/microorganisms8030431	2020
	Insights into the diversity and survival strategies of soil bacterial isolates from the Atacama Desert.	Reverdy A, Hathaway D, Jha J, Michaels G, Sullivan J, McAdoo DD, Riquelme C, Chai Y, Godoy-Carter V.	Front Microbiol	10.3389/fmicb.2024.1335989	2024
	Risk of infection transmission in curvilinear array echoendoscopes: results of a prospective reprocessing and culture registry.	Chapman CG, Siddiqui UD, Manzano M, Konda VJ, Murillo C, Landon EM, Waxman I.	Gastrointest Endosc	10.1016/j.gie.2016.07.049	2017
	Microbial cell-free extracts affect the biochemical characteristics and sensorial quality of sourdough bread.	Cavallo N, De Angelis M, Calasso M, Quinto M, Mentana A, Minervini F, Cappelle S, Gobbetti M.	Food Chem	10.1016/j.foodchem.2017.05.089	2017
	Extended-Spectrum Beta-Lactamase- and Plasmidic AmpC-Producing Enterobacterales among the Faecal Samples in the Bulgarian Community.	Stankova P, Boyanova L, Atanasova D, Mihaylova S, Sredkova M, Gergova R, Mihova K, Markovska R.	Microorganisms	10.3390/microorganisms12091777	2024
Genetics	Complete genome sequence of a commensal bacterium, Hafnia alvei CBA7124, isolated from human feces.	Song HS, Kim JY, Kim YB, Jeong MS, Kang J, Rhee JK, Kwon J, Kim JS, Choi JS, Choi HJ, Nam YD, Roh SW.	Gut Pathog	10.1186/s13099-017-0190-0	2017
Genetics	A metagenomics method for the quantitative detection of bacterial pathogens causing hospital-associated and ventilator-associated pneumonia.	Hauser S, Lazarevic V, Tournoud M, Ruppe E, Santiago Allexant E, Guigon G, Schicklin S, Lanet V, Girard M, Mirande C, Gervasi G, Schrenzel J.	Microbiol Spectr	10.1128/spectrum.01294-23	2023
	Genome Sequence of Hafnia alvei bta3_1, a Bacterium with Antimicrobial Properties Isolated from Honey Bee Gut.	Tian B, Moran NA.	Genome Announc	10.1128/genomea.00439-16	2016
	Collateral sensitivity increases the efficacy of a rationally designed bacteriophage combination to control Salmonella enterica.	Acton L, Pye HV, Thilliez G, Kolenda R, Matthews M, Turner AK, Yasir M, Holden E, Al-Khanaq H, Webber M, Adriaenssens EM, Kingsley RA.	J Virol	10.1128/jvi.01476-23	2024
	Comparing the Biofilm Removal Capacity of NaOCl, Povidone-Iodine, Chlorhexidine, Curcumin, and Triphala as Endodontic Irrigants.	Alghamdi N, Das B, Hugar SI, Sarangi P, Garg G, Kamatchi Subramani S.	Cureus	10.7759/cureus.52067	2024
	Evaluation of Oral Amoxicillin/Clavulanate for Urinary Tract Infections Caused by Ceftriaxone Non-Susceptible Enterobacterales.	Salam ME, Jeffres M, Molina KC, Miller MA, Huang M, Fish DN.	Pharmacy (Basel)	10.3390/pharmacy12020060	2024
	Identification and growth dynamics of meat spoilage microorganisms in modified atmosphere packaged poultry meat by MALDI-TOF MS	Holl L, Behr J, Vogel RF.	Food Microbiol		2016
	Perilla frutescens as potential antimicrobial modifier to against forage oat silage spoilage.	Li X, Chen F, Xiong Y, Guo L, Xu J, Lin Y, Ni K, Yang F.	Front Microbiol	10.3389/fmicb.2022.1053933	2022
Enzymology	Multiple microbial cell-free extracts improve the microbiological, biochemical and sensory features of ewes' milk cheese.	Calasso M, Mancini L, De Angelis M, Conte A, Costa C, Del Nobile MA, Gobbetti M.	Food Microbiol	10.1016/j.fm.2017.04.011	2017
	The protective role of Kombucha extract on the normal intestinal microflora, high-cholesterol diet caused hypercholesterolemia, and histological structures changes in New Zealand white rabbits.	Alaei Z, Doudi M, Setorki M.	Avicenna J Phytomed		2020
	Nisin Inhibition of Gram-Negative Bacteria	Charest A, Reed E, Bozorgzadeh S, Hernandez L, Getsey N, Smith L, Galperina A, Beauregard H, Charest H, Mitchell M, Riley M.	Microorganisms		2024
	A multisite validation of a two hours antibiotic susceptibility flow cytometry assay directly from positive blood cultures.	Pina-Vaz C, Silva-Dias A, Martins-Oliveira I, Gomes R, Perez-Viso B, Cruz S, Rodrigues AG, Sarmento A, Canton R.	BMC Microbiol	10.1186/s12866-024-03341-1	2024
	Evaluation of the BioFire® FilmArray® Pneumonia plus Panel for Detecting Bacterial Etiological Agents of Lower Respiratory Tract Infections in an Oncologic Hospital. Comparison with Conventional Culture Method.	Szymankiewicz MT, Szczepanska A, Stefaniuk E.	Pol J Microbiol	10.33073/pjm-2023-035	2023
	Burkholderia cepacia complex outbreak originating from contaminated wash gloves.	Lo Priore E, Bernasconi S, Schlotterbeck H, Seth-Smith HM, Egli A, Martinetti G, Balmelli C.	Infect Prev Pract	10.1016/j.infpip.2020.100039	2020
	Bacterial bile duct colonization in perihilar cholangiocarcinoma and its clinical significance.	Bednarsch J, Czigany Z, Heij LR, Luedde T, van Dam R, Lang SA, Ulmer TF, Hornef MW, Neumann UP.	Sci Rep	10.1038/s41598-021-82378-y	2021
Metabolism	Fractionation and analysis of lipopolysaccharide-derived oligosaccharides by zwitterionic-type hydrophilic interaction liquid chromatography coupled with electrospray ionisation mass spectrometry.	Man-Kupisinska A, Bobko E, Gozdziewicz TK, Maciejewska A, Jachymek W, Lugowski C, Lukasiewicz J.	Carbohydr Res	10.1016/j.carres.2016.03.024	2016
	Diversity of the lysozyme fold: structure of the catalytic domain from an unusual endolysin encoded by phage Enc34.	Cernooka E, Rumnieks J, Zrelovs N, Tars K, Kazaks A.	Sci Rep	10.1038/s41598-022-08765-1	2022
	Incidence of bactibilia and related factors in patients who undergo cholecystectomy.	Moon DK, Kang JS, Byun Y, Choi YJ, Lee HW, Jang JY, Lim CS.	Ann Surg Treat Res	10.4174/astr.2023.104.1.10	2023
	Endogenous Ethanol and Triglyceride Production by Gut Pichia kudriavzevii, Candida albicans and Candida glabrata Yeasts in Non-Alcoholic Steatohepatitis.	Mbaye B, Borentain P, Magdy Wasfy R, Alou MT, Armstrong N, Mottola G, Meddeb L, Ranque S, Gerolami R, Million M, Raoult D.	Cells	10.3390/cells11213390	2022
Genetics	Escherichia albertii as a Potential Enteropathogen in the Light of Epidemiological and Genomic Studies.	Leszczynska K, Swiecicka I, Daniluk T, Lebensztejn D, Chmielewska-Deptula S, Leszczynska D, Gawor J, Kliber M.	Genes (Basel)	10.3390/genes14071384	2023
	Exploring the interactions between Nosema ceranae infection and the honey bee gut microbiome.	Lau E, Maccaro J, McFrederick QS, Nieh JC.	Sci Rep	10.1038/s41598-024-67796-y	2024
	Sage Essential Oil as an Antimicrobial Agent against Salmonella enterica during Beef Sous Vide Storage	Gal R, Cmikova N, Kacaniova M, Mokrejs P.	Foods		2023
	Reactive Arthritis Update: Spotlight on New and Rare Infectious Agents Implicated as Pathogens.	Zeidler H, Hudson AP.	Curr Rheumatol Rep	10.1007/s11926-021-01018-6	2021
	Comparison of the gut microbiome of sacbrood virus-resistant and -susceptible Apis cerana from South Korea.	Yun BR, Truong AT, Choi YS, Lee MY, Kim BY, Seo M, Yoon SS, Yoo MS, Van Quyen D, Cho YS.	Sci Rep	10.1038/s41598-022-13535-0	2022
	Characterization of the Emerging Enteropathogen Escherichia Albertii Isolated from Urine Samples of Patients Attending Sapporo Area Hospitals, Japan.	Fujioka M, Yoshioka S, Ito M, Ahsan CR.	Int J Microbiol	10.1155/2022/4236054	2022
	Growth and Biocontrol of Listeria monocytogenes in Greek Anthotyros Whey Cheese without or with a Crude Enterocin A-B-P Extract: Interactive Effects of the Native Spoilage Microbiota during Vacuum-Packed Storage at 4 °C.	Sameli N, Samelis J.	Foods	10.3390/foods11030334	2022
Enzymology	Recovery of Hafnia alvei from diseased brown trout, Salmo trutta L., and healthy noble crayfish, Astacus astacus (L.), in Bulgaria.	Orozova P, Sirakov I, Chikova V, Popova R, Al-Harbi AH, Crumlish M, Austin B.	J Fish Dis	10.1111/jfd.12212	2014
	The menace within: bacterial amyloids as a trigger for autoimmune and neurodegenerative diseases.	Elkins M, Jain N, Tukel C.	Curr Opin Microbiol	10.1016/j.mib.2024.102473	2024
	Combating foodborne pathogens: Efficacy of plasma-activated water with supplementary methods for Staphylococcus aureus eradication on chicken, and beef.	Moonsub K, Seesuriyachan P, Boonyawan D, Rachtanapun P, Sawangrat C, Opassuwan T, Wattanutchariya W.	Food Chem X	10.1016/j.fochx.2024.101890	2024
	Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate.	Lazaro-Diez M, Redondo-Salvo S, Arboleya-Agudo A, Ocejo-Vinyals JG, Chapartegui-Gonzalez I, Ocampo-Sosa AA, Acosta F, Martinez-Martinez L, Ramos-Vivas J.	Genome Announc	10.1128/genomea.00556-16	2016
Transcriptome	Current Knowledge on Bee Innate Immunity Based on Genomics and Transcriptomics.	Zhao X, Liu Y.	Int J Mol Sci	10.3390/ijms232214278	2022
	Leveraging stewardship to promote ceftriaxone use in severe infections with low- and no-risk AmpC Enterobacterales.	Hardy ME, Kenney RM, Tibbetts RJ, Shallal AB, Veve MP.	Antimicrob Agents Chemother	10.1128/aac.00826-23	2023
Genetics	Linezolid Resistance Genes and Mutations among Linezolid-Susceptible Enterococcus spp.-A Loose Cannon?	Bender JK, Fleige C, Funk F, Moreto-Castellsague C, Fischer MA, Werner G.	Antibiotics (Basel)	10.3390/antibiotics13010101	2024
	The honeybee microbiota and its impact on health and disease.	Motta EVS, Moran NA.	Nat Rev Microbiol	10.1038/s41579-023-00990-3	2024
	Occurrence and Characteristics of Escherichia albertii in Wild Birds and Poultry Flocks in Switzerland.	Barmettler K, Biggel M, Treier A, Muchaamba F, Vogler BR, Stephan R.	Microorganisms	10.3390/microorganisms10112265	2022
	Antibiotic susceptibility patterns of pathogens isolated from laboratory specimens at Livingstone Central Hospital in Zambia.	Mwansa TN, Kamvuma K, Mulemena JA, Phiri CN, Chanda W.	PLOS Glob Public Health	10.1371/journal.pgph.0000623	2022
Metabolism	Occurrence of glycine in the core oligosaccharides of Hafnia alvei lipopolysaccharides--identification of disubstituted glycoform.	Gozdziewicz TK, Man-Kupisinska A, Lugowski C, Lukasiewicz J.	Carbohydr Res	10.1016/j.carres.2014.11.017	2015
	Enhancing the Shelf Life of Sous-Vide Red Deer Meat with Piper nigrum Essential Oil: A Study on Antimicrobial Efficacy against Listeria monocytogenes.	Kacaniova M, Cmikova N, Ban Z, Garzoli S, Elizondo-Luevano JH, Ben Hsouna A, Ben Saad R, Bianchi A, Venturi F, Kluz MI, Hascik P.	Molecules	10.3390/molecules29174179	2024
	Safety issues of raw milk: evaluation of bacteriological and physicochemical characteristics of human milk from a bank in a teaching hospital, focusing on Staphylococcus species.	Salerno T, Siqueira AK, Pinto JPAN, Cunha MLRSD, Silvestre PK, Condas LAZ, Lara GHB, Pereira JG, Silva AVD, Listoni FJP, Martins LSA, Motta RG, Ribeiro MG.	Rev Inst Med Trop Sao Paulo	10.1590/s1678-9946202163054	2021
	Bacterial communities of fresh goat meat packaged in modified atmosphere.	Carrizosa E, Benito MJ, Ruiz-Moyano S, Hernandez A, Villalobos MDC, Martin A, Cordoba MG.	Food Microbiol	10.1016/j.fm.2017.01.023	2017
Biotechnology	Molecular Diversity of ESBL-Producing Escherichia coli from Foods of Animal Origin and Human Patients.	Alegria A, Arias-Temprano M, Fernandez-Natal I, Rodriguez-Calleja JM, Garcia-Lopez ML, Santos JA.	Int J Environ Res Public Health	10.3390/ijerph17041312	2020
	Enhanced l-Lysine into 1,5-Diaminopentane Conversion via Statistical Optimization of Whole-Cell Decarboxylation System.	Kim H, Yoo HY, Park N, Kim H, Lee J, Baek Y, Lee T, Oh JM, Cho J, Park C.	Polymers (Basel)	10.3390/polym11081372	2019
	Modeling seasonal immune dynamics of honey bee (Apis mellifera L.) response to injection of heat-killed Serratia marcescens.	Hurychova J, Dostal J, Kunc M, Sreibr S, Dostalkova S, Petrivalsky M, Hyrsl P, Titera D, Danihlik J, Dobes P.	PLoS One	10.1371/journal.pone.0311415	2024
	How Melatonin Affects Plant Growth and the Associated Microbiota.	Gamalero E, Glick BR.	Biology (Basel)	10.3390/biology14040371	2025
Metabolism	Ficolin-3 activity towards the opportunistic pathogen, Hafnia alvei.	Michalski M, St Swierzko A, Lukasiewicz J, Man-Kupisinska A, Karwaciak I, Przygodzka P, Cedzynski M.	Immunobiology	10.1016/j.imbio.2014.08.012	2015
	In vitro assessment of bacterial supernatants on hypothalamic gene expression: implications for appetite regulation.	Cuesta-Marti C, Valderrama B, Bastiaanssen T, Cryan JF, Stanton C, O'Mahony SM, Clarke G, Schellekens H.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00820-9	2025
	Recombinant design of the enzymatically active domain of phage Enc34 endolysin to improve its activity against Gram-negative bacteria.	Kazaka T, Zrelovs N, Akopjana I, Bogans J, Jansons J, Dislers A, Kazaks A.	FEMS Microbiol Lett	10.1093/femsle/fnae103	2024
Pathogenicity	Antimicrobial resistance patterns of Enterobacteriaceae in European wild bird species admitted in a wildlife rescue centre.	Giacopello C, Foti M, Mascetti A, Grosso F, Ricciardi D, Fisichella V, Lo Piccolo F.	Vet Ital	10.12834/vetit.327.1374.2	2016
Pathogenicity	Obesity and the gut microbiota: implications of neuroendocrine and immune signaling.	Romani-Perez M, Liebana-Garcia R, Flor-Duro A, Bonillo-Jimenez D, Bullich-Vilarrubias C, Olivares M, Sanz Y.	FEBS J	10.1111/febs.17249	2025
	The impact of gut bacteria producing long chain homologs of vitamin K₂ on colorectal carcinogenesis.	Smajdor J, Jedlinska K, Porada R, Gorska-Ratusznik A, Policht A, Srottek M, Wiecek G, Bas B, Strus M.	Cancer Cell Int	10.1186/s12935-023-03114-2	2023
	A review on comparative analysis of marine and freshwater fish gut microbiomes: insights into environmental impact on gut microbiota.	Singh BK, Thakur K, Kumari H, Mahajan D, Sharma D, Sharma AK, Kumar S, Singh B, Pankaj PP, Kumar R.	FEMS Microbiol Ecol	10.1093/femsec/fiae169	2025
	Microbial cell-free extracts as sources of enzyme activities to be used for enhancement flavor development of ewe milk cheese.	Calasso M, Mancini L, Di Cagno R, Cardinali G, Gobbetti M.	J Dairy Sci	10.3168/jds.2015-9362	2015
	Serial fermentation in milk generates functionally diverse community lineages with different degrees of structure stabilization.	Gapp C, Dijamentiuk A, Mangavel C, Callon C, Theil S, Revol-Junelles A-M, Chassard C, Borges F.	mSystems	10.1128/msystems.00445-24	2024
	Wounds of Companion Animals as a Habitat of Antibiotic-Resistant Bacteria That Are Potentially Harmful to Humans-Phenotypic, Proteomic and Molecular Detection.	Lenart-Boron A, Stankiewicz K, Czernecka N, Ratajewicz A, Bulanda K, Heliasz M, Sosinska D, Dworak K, Ciesielska D, Sieminska I, Tischner M.	Int J Mol Sci	10.3390/ijms25063121	2024
	High-Resolution Comparative and Quantitative Proteomics of Biogenic-Amine-Producing Bacteria and Virulence Factors Present in Seafood.	Abril AG, Calo-Mata P, Villa TG, Bohme K, Barros-Velazquez J, Sanchez-Perez A, Pazos M, Carrera M.	J Agric Food Chem	10.1021/acs.jafc.3c06607	2024
	Identification and growth dynamics of meat spoilage microorganisms in modified atmosphere packaged poultry meat by MALDI-TOF MS.	Holl L, Behr J, Vogel RF.	Food Microbiol	10.1016/j.fm.2016.07.003	2016
Pathogenicity	Neonates exposed to HIV but uninfected exhibit an altered gut microbiota and inflammation associated with impaired breast milk antibody function.	Byrne A, Diener C, Brown BP, Maust BS, Feng C, Alinde BL, Gibbons SM, Koch M, Gray CM, Jaspan HB, Nyangahu DD.	Microbiome	10.1186/s40168-024-01973-z	2024
	Microbial and Physico-Chemical Characterization of Cold Smoked Sea Bass (Dicentrarchus labrax), a New Product of Fishery.	Pellegrini M, Iacumin L, Pleadin J, Kresic G, Orecchia E, Colautti A, Vulic A, Kudumija N, Bernardi C, Comi G.	Foods	10.3390/foods12142685	2023
	Impact of Biometric Patient Data, Probiotic Supplementation, and Selected Gut Microorganisms on Calprotectin, Zonulin, and sIgA Concentrations in the Stool of Adults Aged 18-74 Years.	Jendraszak M, Galecka M, Kotwicka M, Schwiertz A, Regdos A, Pazgrat-Patan M, Andrusiewicz M.	Biomolecules	10.3390/biom12121781	2022
	Metagenomic and metabolomic analysis of changes in intestinal contents of rainbow trout (Oncorhynchus mykiss) infected with infectious hematopoietic necrosis virus at different culture water temperatures.	Hai Q, Wang J, Kang W, Cheng S, Li J, Lyu N, Li Y, Luo Z, Liu Z.	Front Microbiol	10.3389/fmicb.2023.1275649	2023
	Evaluation of in-vitro susceptibility of ß-lactam-resistant Gram-negative bacilli to ceftazidime-avibactam and ceftolozane-tazobactam from clinical samples of a general hospital in southern Brazil.	Carvalho TN, Kobs VC, Hille D, Deglmann RC, Melo LH, Franca PHC.	Rev Soc Bras Med Trop	10.1590/0037-8682-0277-2022	2023
	Is Carbapenem Therapy Necessary for the Treatment of Non-CTX-M Extended-Spectrum beta-Lactamase-Producing Enterobacterales Bloodstream Infections?	Hareza DA, Cosgrove SE, Simner PJ, Harris AD, Bergman Y, Conzemius R, Jacobs E, Beisken S, Tamma PD.	Clin Infect Dis	10.1093/cid/ciad703	2024
Enzymology	Purification, biochemical characterization, and genetic cloning of the phytase produced by Burkholderia sp. strain a13.	Graminho ER, Takaya N, Nakamura A, Hoshino T.	J Gen Appl Microbiol	10.2323/jgam.61.15	2015
	Assessment of Pb(II), Cd(II), and Al(III) Removal Capacity of Bacteria from Food and Gut Ecological Niches: Insights into Biodiversity to Limit Intestinal Biodisponibility of Toxic Metals.	George F, Mahieux S, Daniel C, Titecat M, Beauval N, Houcke I, Neut C, Allorge D, Borges F, Jan G, Foligne B, Garat A.	Microorganisms	10.3390/microorganisms9020456	2021
	Interplay of obesity and parasitic infection: current evidence of immunogenesis, tumorigenesis and leptin receptor involvement.	Saftawy EE, Alghamdi M, Aboulhoda BE.	Nutr Metab (Lond)	10.1186/s12986-025-00972-7	2025
	Cultivable Bacteria Associated with the Microbiota of Troglophile Bats.	Foti M, Spena MT, Fisichella V, Mascetti A, Colnaghi M, Grasso M, Piraino C, Sciurba F, Grasso R.	Animals (Basel)	10.3390/ani12192684	2022
	Molecular Characterization of Histamine-Producing Psychrotrophic Bacteria Isolated from Red Octopus (Octopus maya) in Refrigerated Storage.	Gullian Klanian M, Delgadillo Diaz M, Sanchez Solis MJ.	High Throughput	10.3390/ht7030025	2018
	Performance and Impact on Antibiotic Prescriptions of a Multiplex PCR in a Real-Life Cohort of Critically Ill Patients with Suspected Ventilated Pneumonia: A Retrospective Monocentric Observational Study.	Chambe E, Bortolotti P, Diesnis R, Laurans C, Hequette-Ruz R, Panaget S, Herbecq P, Vachee A, Meybeck A.	Antibiotics (Basel)	10.3390/antibiotics12121646	2023
	ACT-107, a novel variant of AmpC beta-lactamase from Enterobacter huaxiensis isolated from Neotropical leaf frog (Phyllomedusa distincta) inhabiting the Brazilian Atlantic Forest.	Becerra J, Araujo GG, Vasquez-Ponce F, Lamadrid-Feris F, Lincopan N.	J Glob Antimicrob Resist	10.1016/j.jgar.2023.04.016	2023
	Multicentre study of the burden of multidrug-resistant bacteria in the aetiology of infected diabetic foot ulcers.	Adeyemo AT, Kolawole B, Rotimi VO, Aboderin AO.	Afr J Lab Med	10.4102/ajlm.v10i1.1261	2021
	Development of an improved selective medium for the detection of Shigella spp.	Yi Cy, Kang DH.	Lebensm Wiss Technol	10.1016/j.lwt.2015.08.028	2016
Pathogenicity	The effect of reduced sodium chloride content on the microbiological and biochemical properties of a soft surface-ripened cheese.	Dugat-Bony E, Sarthou AS, Perello MC, de Revel G, Bonnarme P, Helinck S.	J Dairy Sci	10.3168/jds.2015-10502	2016
Metabolism	Conversion of glycerol to 1,3-propanediol by Citrobacter freundii and Hafnia alvei - newly isolated strains from the Enterobacteriaceae.	Drozdzynska A, Pawlicka J, Kubiak P, Kosmider A, Pranke D, Olejnik-Schmidt A, Czaczyk K.	N Biotechnol	10.1016/j.nbt.2014.04.002	2014
	Survival of cheese-ripening microorganisms in a dynamic simulator of the gastrointestinal tract.	Adouard N, Magne L, Cattenoz T, Guillemin H, Foligne B, Picque D, Bonnarme P.	Food Microbiol	10.1016/j.fm.2015.03.002	2016
	Histamine Contents in Raw Long-ripening Meat Products Commercially Available in Poland.	Michalski M, Pawul-Gruba M, Madejska A.	J Vet Res	10.2478/jvetres-2021-0062	2021
	Quality and Microbiological Safety of Poultry Meat Marinated with the Use of Apple and Lemon Juice.	Augustynska-Prejsnar A, Kacaniova M, Ormian M, Topczewska J, Sokolowicz Z.	Int J Environ Res Public Health	10.3390/ijerph20053850	2023
	Diagnosing COVID-19; towards a feasible COVID-19 rule-out protocol.	De Clercq J, Malfait T, Malfait S, Boelens J, Coorevits L, Padalko E, Vandendriessche S, Verhasselt B, Morbee L, Bauters F, Hertegonne K, Stevens D, Vande Weygaerde Y, Vermaelen K, Van Biesen W, Vanommeslaeghe F, Verbeke F, Piers R, Van Den Noortgate N, Desmet T, Vermassen F, Vandekerckhove L, Van Braeckel E.	Acta Clin Belg	10.1080/17843286.2021.1883362	2022
Proteome	Reprint of "new complete structure of Hafnia alvei clinical isolate strain PCM 2670 semi-rough lipopolysaccharide".	Bobko E, Tyras M, Jachymek W.	Carbohydr Res	10.1016/j.carres.2013.06.021	2013
	Short Communication: Low Prevalence of Clinically Important Antibiotic-Resistant Strains among Non-Pathogenic Genera of the Tribe Klebsielleae.	Zakrzewski AJ, Chajecka-Wierzchowska W, Zadernowska A.	Foods	10.3390/foods11152270	2022
	Bacteriobiota and Chemical Changes during the Ripening of Traditional Fermented "Pirot 'Ironed' Sausage".	Bogdanovic S, Stankovic S, Beric T, Tomasevic I, Heinz V, Terjung N, Dimkic I.	Foods	10.3390/foods12030664	2023
	High-Level Conversion of l-lysine into Cadaverine by Escherichia coli Whole Cell Biocatalyst Expressing Hafnia alvei l-lysine Decarboxylase.	Kim HT, Baritugo KA, Oh YH, Kang KH, Jung YJ, Jang S, Song BK, Kim IK, Lee MO, Hwang YT, Park K, Park SJ, Joo JC.	Polymers (Basel)	10.3390/polym11071184	2019
	Higher-order interactions shape microbial interactions as microbial community complexity increases.	Morin MA, Morrison AJ, Harms MJ, Dutton RJ.	Sci Rep	10.1038/s41598-022-25303-1	2022
	New complete structure of Hafnia alvei clinical isolate strain PCM 2670 semi-rough lipopolysaccharide.	Bobko E, Tyras M, Jachymek W.	Carbohydr Res	10.1016/j.carres.2013.03.029	2013
Metabolism	Mycobacterial antigen 85 complex (Ag85) as a target for ficolins and mannose-binding lectin.	Swierzko AS, Bartlomiejczyk MA, Brzostek A, Lukasiewicz J, Michalski M, Dziadek J, Cedzynski M.	Int J Med Microbiol	10.1016/j.ijmm.2016.04.004	2016
	Snapshot of COVID-19 superinfections in Marseille hospitals: where are the common pathogens?	Le Glass E, Raoult D, Dubourg G.	Epidemiol Infect	10.1017/s0950268822001704	2022
	Diversity, Antibiotic Resistance, and Biofilm-Forming Ability of Enterobacteria Isolated from Red Meat and Poultry Preparations.	Capita R, Castano-Arriba A, Rodriguez-Melcon C, Igrejas G, Poeta P, Alonso-Calleja C.	Microorganisms	10.3390/microorganisms8081226	2020
	Ventilator Acquired Pneumonia in COVID-19 ICU Patients: A Retrospective Cohort Study during Pandemia in France.	Moreno J, Carvelli J, Lesaux A, Boucekine M, Tonon D, Bichon A, Gainnier M, Bourenne J.	J Clin Med	10.3390/jcm12020421	2023
	Interaction of Mannose-Binding Lectin With Lipopolysaccharide Outer Core Region and Its Biological Consequences.	Man-Kupisinska A, Swierzko AS, Maciejewska A, Hoc M, Rozalski A, Rozalski A, Siwinska M, Lugowski C, Cedzynski M, Lukasiewicz J.	Front Immunol	10.3389/fimmu.2018.01498	2018
	SMT-738: a novel small-molecule inhibitor of bacterial lipoprotein transport targeting Enterobacteriaceae.	Breidenstein EBM, Khan N, Duffy T, Coward C, Avis T, Abdulle O, Li C-M, Mason CS.	Antimicrob Agents Chemother	10.1128/aac.00695-23	2024
	The Use of Less Conventional Meats or Meat with High pH Can Lead to the Growth of Undesirable Microorganisms during Natural Meat Fermentation.	Charmpi C, Van Reckem E, Sameli N, Van der Veken D, De Vuyst L, Leroy F.	Foods	10.3390/foods9101386	2020
	Control of Shigatoxin-producing Escherichia coli in cheese by dairy bacterial strains.	Callon C, Arliguie C, Montel MC.	Food Microbiol	10.1016/j.fm.2015.08.009	2016
	Diversity of microbiota in Slovak summer ewes' cheese "Bryndza".	Kacaniova M, Terentjeva M, Kunova S, Hascik P, Kowalczewski PL, Stefanikova J.	Open Life Sci	10.1515/biol-2021-0038	2021
	Colonization dynamics of subgingival microbiota in recently installed dental implants compared to healthy teeth in the same individual: a 6-month prospective observational study.	Silva-Boghossian CM, Duarte PT, Silva DGD, Lourenco TGB, Colombo APV.	J Appl Oral Sci	10.1590/1678-7757-2023-0134	2023
	Impact of Nested Multiplex Polymerase Chain Reaction Assay in the management of pediatric patients with acute respiratory tract infections: a single center experience.	Sherif B, Hamza HM, Abdelwahab HEE.	Infez Med	10.53854/liim-3104-13	2023
Pathogenicity	In Vitro Antagonistic Effect of Gut Bacteriota Isolated from Indigenous Honey Bees and Essential Oils against Paenibacillus Larvae.	Kacaniova M, Terentjeva M, Ziarovska J, Kowalczewski PL.	Int J Mol Sci	10.3390/ijms21186736	2020
	Detection of plasmid-mediated AmpC beta-lactamases in Klebsiella pneumoniae clinical isolates from Bushehr province, Iran.	Faghihi K, Tajbakhsh S, Fouladvand M, Latifi B, Yousefi F.	Iran J Microbiol	10.18502/ijm.v15i3.12897	2023
	Transcription Profiling Reveals Cooperative Metabolic Interactions in a Microbial Cheese-Ripening Community Composed of Debaryomyces hansenii, Brevibacterium aurantiacum, and Hafnia alvei.	Pham NP, Landaud S, Lieben P, Bonnarme P, Monnet C.	Front Microbiol	10.3389/fmicb.2019.01901	2019
	Evaluation PCR panel of the FilmArray® pneumonia plus for pathogen detection of ventilator-associated pneumonia in children and its impact on therapeutic management.	Debbagh F, Ben Houmich T, Guennouni M, Sahraoui H, Hanchi AL, Mouaffak Y, Younous S, Soraa N.	Iran J Microbiol	10.18502/ijm.v15i1.11914	2023
	Quorum Sensing and Spoilage Potential of Psychrotrophic Enterobacteriaceae Isolated from Milk.	Martins ML, Pinto UM, Riedel K, Vanetti MCD.	Biomed Res Int	10.1155/2018/2723157	2018
	Diagnosis and Treatment of Bacterial Pneumonia in Critically Ill Patients with COVID-19 Using a Multiplex PCR Assay: A Large Italian Hospital's Five-Month Experience.	Posteraro B, Cortazzo V, Liotti FM, Menchinelli G, Ippoliti C, De Angelis G, La Sorda M, Capalbo G, Vargas J, Antonelli M, Sanguinetti M, De Pascale G, Spanu T.	Microbiol Spectr	10.1128/spectrum.00695-21	2021
	The Potential of Thymus serpyllum Essential Oil as an Antibacterial Agent against Pseudomonas aeruginosa in the Preservation of Sous Vide Red Deer Meat.	Kacaniova M, Garzoli S, Ben Hsouna A, Bianchi A, Kluz MI, Elizondo-Luevano JH, Ban Z, Ben Saad R, Mnif W, Hascik P.	Foods	10.3390/foods13193107	2024
	Gas within the Intervertebral Disc Does Not Rule Out Spinal Infection-A Case Series of 135 Patients with Spontaneous Spondylodiscitis.	Schomig F, Li Z, Becker L, Vu-Han TL, Pumberger M, Diekhoff T.	Diagnostics (Basel)	10.3390/diagnostics12051089	2022
	Prevalence of the polymorphic H-f icolin (FCN3) genes and mannose-binding lectin-associated serine protease-2 (MASP2) in indigenous populations from the Russian Arctic regions.	Smolnikova MV, Tereshchenko SY.	Vavilovskii Zhurnal Genet Selektsii	10.18699/vj21.098	2021
	Microorganisms of the Intestinal Microbiota of Oncorhynchus Mykiss Produce Antagonistic Substances Against Bacteria Contaminating Food and Causing Disease in Humans.	Lobos O, Barrera A, Padilla C.	Ital J Food Saf	10.4081/ijfs.2017.6240	2017
	Host genetic background rather than diet-induced gut microbiota shifts of sympatric black-necked crane, common crane and bar-headed goose.	Wang Y, Long Z, Zhang Y, Li X, Zhang X, Su H.	Front Microbiol	10.3389/fmicb.2023.1270716	2023
	Genomic Insights into Drug Resistance Determinants in Cedecea neteri, A Rare Opportunistic Pathogen.	Thompson DK, Sharkady SM.	Microorganisms	10.3390/microorganisms9081741	2021
	In Vitro Activity of Imipenem-Relebactam, Meropenem-Vaborbactam, Ceftazidime-Avibactam and Comparators on Carbapenem-Resistant Non-Carbapenemase-Producing Enterobacterales.	Bonnin RA, Bernabeu S, Emeraud C, Naas T, Girlich D, Jousset AB, Dortet L.	Antibiotics (Basel)	10.3390/antibiotics12010102	2023
	Biocide Tolerance and Impact of Sanitizer Concentrations on the Antibiotic Resistance of Bacteria Originating from Cheese.	Gyorgy E, Unguran KA, Laslo E.	Foods	10.3390/foods12213937	2023
Enzymology	Molecular and Kinetic Characterization of MOX-9, a Plasmid-Mediated Enzyme Representative of a Novel Sublineage of MOX-Type Class C beta-Lactamases.	Piccirilli A, Antonelli A, D'Andrea MM, Cherubini S, Perilli M, Rossolini GM.	Antimicrob Agents Chemother	10.1128/aac.00595-22	2022
	Assessment of microbiological safety of ground water used in rainbow trout farms	Grigor'ian KE, Badalyan G, Sargsyan M, Harutyunyan A.	Lebensm Wiss Technol	10.1016/j.lwt.2013.06.004	2014
	Rhodococcus spp. interacts with human norovirus in clinical samples and impairs its replication on human intestinal enteroids.	Santiso-Bellon C, Randazzo W, Carmona-Vicente N, Pena-Gil N, Carcamo-Calvo R, Lopez-Navarro S, Navarro-Lleo N, Yebra MJ, Monedero V, Buesa J, Gozalbo-Rovira R, Rodriguez-Diaz J.	Gut Microbes	10.1080/19490976.2025.2469716	2025
	Impact of urinary catheter on resistance patterns and clinical outcomes on complicated urinary tract infection.	Moreno CEL, Velandia OMM, Sanchez CAB, Diaz JSM, Herazo JRG.	Int Urogynecol J	10.1007/s00192-022-05320-4	2023
Metabolism	Application of bacteriophages to reduce biofilms formed by hydrogen sulfide producing bacteria on surfaces in a rendering plant.	Gong C, Jiang X.	Can J Microbiol	10.1139/cjm-2015-0142	2015
	Hafnia alvei Urosepsis in a Kidney Transplant Patient.	Stanic M, Meusburger E, Hartmann G, Lhotta K.	Case Rep Transplant	10.1155/2015/863131	2015
Metabolism	Hypothetical glycerol pathways of newly isolated strains capable of 1,3-propanediol production.	Leja K, Samul D, Drozdzynska A, Myszka K, Juzwa W, Pawlicka J, Czaczyk K.	Acta Biochim Pol	10.18388/abp.2014_1842	2014
	Analysis of Cultured Gut Microbiota Using MALDI-TOF MS in COVID-19 Patients from Serbia during the Predominance of the SARS-CoV-2 Omicron Variant.	Patic A, Kovacevic G, Vukovic V, Hrnjakovic Cvjetkovic I, Ristic M, Milosavljevic B, Medic D, Djilas M, Radovanov J, Kovacevic A, Pustahija T, Balac D, Petrovic V.	Microorganisms	10.3390/microorganisms12091800	2024
Pathogenicity	Antibiotic Resistance, Virulence Factors, Phenotyping, and Genotyping of Non-Escherichia coli Enterobacterales from the Gut Microbiota of Healthy Subjects.	Amaretti A, Righini L, Candeliere F, Musmeci E, Bonvicini F, Gentilomi GA, Rossi M, Raimondi S.	Int J Mol Sci	10.3390/ijms21051847	2020
	Sustained in situ protein production and release in the mammalian gut by an engineered bacteriophage.	Baker ZR, Zhang Y, Zhang H, Franklin HC, Serpa PBS, Southard T, Li L, Hsu BB.	Nat Biotechnol	10.1038/s41587-025-02570-7	2025
	Antimicrobial activities and phylogenetic study of Erythrina senegalensis DC (Fabaceae) seed lectin.	Enoma S, Adewole TS, Agunbiade TO, Kuku A.	BioTechnologia (Pozn)	10.5114/bta.2023.125083	2023
	Convenient synthesis of the pentasaccharide repeating unit corresponding to the cell wall O-antigen of Escherichia albertii O4.	Manna T, Gucchait A, Misra AK.	Beilstein J Org Chem	10.3762/bjoc.16.12	2020
	Enhancing Deer Sous Vide Meat Shelf Life and Safety with Eugenia caryophyllus Essential Oil against Salmonella enterica.	Kacaniova M, Garzoli S, Ben Hsouna A, Ban Z, Elizondo-Luevano JH, Kluz MI, Ben Saad R, Hascik P, Cmikova N, Waskiewicz-Robak B, Kollar J, Bianchi A.	Foods	10.3390/foods13162512	2024
	Sex differences in colonic gene expression and fecal microbiota composition in a mouse model of obesity-associated colorectal cancer.	Chang YM, Kang YR, Lee YG, Sung MK.	Sci Rep	10.1038/s41598-024-53861-z	2024
	Clinical Outcomes of Third-Generation Cephalosporin Definitive Therapy for Bloodstream Infections Due to Enterobacterales with Potential AmpC Induction: A Single-Center Retrospective Study.	Vossius G, Meex C, Moerman F, Thys M, Ernst M, Bourgeois ME, Wagner L, Delahaye T, Darcis G.	Pathogens	10.3390/pathogens12091152	2023
	Food risk associated with vegetable consumption, exposure to antimicrobial-resistant strains and pesticide residues.	Castello A, Lo Cascio G, Ferraro C, Pantano L, Costa A, Butera G, Oliveri G, Rizzuto ML, Alduina R, Cardamone C.	Ital J Food Saf	10.4081/ijfs.2023.11134	2023
	Predominance of Non-carbapenemase Producing Carbapenem-Resistant Enterobacterales in South Texas.	Black CA, So W, Dallas SS, Gawrys G, Benavides R, Aguilar S, Chen CJ, Shurko JF, Lee GC.	Front Microbiol	10.3389/fmicb.2020.623574	2020
	Draft Genome Sequence of Hafnia paralvei Strain GTA-HAF03.	Kohlman ME, Carrillo CD, Wong A.	Genome Announc	10.1128/genomea.01592-14	2015
	Effects of Saccharomyces cerevisiae cell wall addition on feed digestibility, fecal fermentation and microbiota and immunological parameters in adult cats.	de Oliveira Matheus LF, Risolia LW, Ernandes MC, de Souza JM, Oba PM, Vendramini THA, Pedrinelli V, Henriquez LBF, de Oliveira Massoco C, Pontieri CFF, Brunetto MA.	BMC Vet Res	10.1186/s12917-021-03049-8	2021
	In vitro activity of mecillinam, temocillin and nitroxoline against MDR Enterobacterales.	Plambeck L, Fuchs F, Sattler J, Hamprecht A.	JAC Antimicrob Resist	10.1093/jacamr/dlac059	2022
Metabolism	Fast-track identification of CTX-M-extended-spectrum-beta-lactamase- and carbapenemase-producing Enterobacterales in bloodstream infections: implications on the likelihood of deduction of antibiotic susceptibility in emergency and internal medicine departments.	Boattini M, Bianco G, Iannaccone M, Ghibaudo D, Almeida A, Cavallo R, Costa C.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-021-04192-8	2021
	Assessment of Postharvest Practices of Tuna Sold at the Honiara Fish Market in the Solomon Islands.	Solo MK, Lako J, Mani F, Brodie G.	Int J Food Sci	10.1155/2023/6594017	2023
	Assessment of technological characteristics and microbiological quality of marinated turkey meat with the use of dairy products and lemon juice.	Augustynska-Prejsnar A, Hanus P, Sokolowicz Z, Kacaniova M.	Anim Biosci	10.5713/ab.21.0120	2021
Enzymology	Aerobic bacterial microbiota isolated from the cloaca of the European pond turtle (Emys orbicularis) in Poland.	Nowakiewicz A, Ziolkowska G, Zieba P, Dziedzic BM, Gnat S, Wojcik M, Dziedzic R, Kostruba A.	J Wildl Dis	10.7589/2013-07-157	2015
	Assessment of the Spoilage Microbiota during Refrigerated (4 °C) Vacuum-Packed Storage of Fresh Greek Anthotyros Whey Cheese without or with a Crude Enterocin A-B-P-Containing Extract.	Sameli N, Sioziou E, Bosnea L, Kakouri A, Samelis J.	Foods	10.3390/foods10122946	2021
	Worsening COVID-19 Disease Course After Surgical Trauma: A Case Series.	Cuypers Q, Vandebergh V, Stessel B, Callebaut I, Depauw I, Saldien V, Vrancken D.	Anesth Pain Med	10.5812/aapm-127356	2022
Genetics	A metatranscriptomic analysis of diseased social wasps (Vespula vulgaris) for pathogens, with an experimental infection of larvae and nests.	Quinn O, Gruber MAM, Brown RL, Baty JW, Bulgarella M, Lester PJ.	PLoS One	10.1371/journal.pone.0209589	2018
Enzymology	Microbiota and metabolome of un-started and started Greek-type fermentation of Bella di Cerignola table olives.	De Angelis M, Campanella D, Cosmai L, Summo C, Rizzello CG, Caponio F.	Food Microbiol	10.1016/j.fm.2015.06.002	2015
	Performance and impact of a multiplex PCR in ICU patients with ventilator-associated pneumonia or ventilated hospital-acquired pneumonia.	Peiffer-Smadja N, Bouadma L, Mathy V, Allouche K, Patrier J, Reboul M, Montravers P, Timsit JF, Armand-Lefevre L.	Crit Care	10.1186/s13054-020-03067-2	2020
Metabolism	Interactions of bacteriophage T4 adhesin with selected lipopolysaccharides studied using atomic force microscopy.	Brzozowska E, Lesniewski A, Sek S, Wieneke R, Tampe R, Gorska S, Jonsson-Niedziolka M, Niedziolka-Jonsson J.	Sci Rep	10.1038/s41598-018-29383-w	2018
	Characteristics of N-Acylhomoserine Lactones Produced by Hafnia alvei H4 Isolated from Spoiled Instant Sea Cucumber.	Hou HM, Zhu YL, Wang JY, Jiang F, Qu WY, Zhang GL, Hao HS.	Sensors (Basel)	10.3390/s17040772	2017
Pathogenicity	Chemical composition and antibacterial activity of Lavandula coronopifolia essential oil against antibiotic-resistant bacteria.	Ait Said L, Zahlane K, Ghalbane I, El Messoussi S, Romane A, Cavaleiro C, Salgueiro L.	Nat Prod Res	10.1080/14786419.2014.954246	2015
	Clinical significance and intestinal microbiota composition in immunocompromised children with norovirus gastroenteritis.	Lin PC, Yang YSH, Lin SC, Lu MC, Tsai YT, Lu SC, Chen SH, Chen SY.	PLoS One	10.1371/journal.pone.0266876	2022
	Profile of Enterobacteria Resistant to Beta-Lactams.	Santos AL, Dos Santos AP, Ito CRM, Queiroz PHP, de Almeida JA, de Carvalho Junior MAB, de Oliveira CZ, Avelino MAG, Wastowski IJ, Gomes GPLA, Souza ACSE, Vasconcelos LSNOL, Santos MO, da Silva CA, Carneiro LC.	Antibiotics (Basel)	10.3390/antibiotics9070410	2020
	PATTERN OF MULTIDRUG RESISTANT BACTERIA ASSOCIATED WITH INTENSIVE CARE UNIT INFECTIONS IN IBADAN, NIGERIA.	Makanjuola OB, Fayemiwo SA, Okesola AO, Gbaja A, Ogunleye VA, Kehinde AO, Bakare RA.	Ann Ib Postgrad Med		2018
Biotechnology	Behavior of Escherichia coli O26:H11 in the presence of Hafnia alvei in a model cheese ecosystem.	Delbes-Paus C, Miszczycha S, Ganet S, Helinck S, Veisseire P, Pochet S, Thevenot D, Montel MC.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2012.10.019	2013
	Genomic characterization of endemic diarrheagenic Escherichia coli and Escherichia albertii from infants with diarrhea in Vietnam.	Iguchi A, Takemura T, Ogura Y, Nguyen TTH, Kikuchi T, Okuno M, Tokizawa A, Iwashita H, Pham HQA, Doan TH, Tran NL, Tran TL, Nguyen TH, Tran TH, Pham TNL, Dao TD, Vu TMH, Nguyen TN, Vu H, Nguyen VT, Vu TTH, Le TH, Lai TA, Ngo TC, Hasebe F, Nguyen DT, Yamashiro T.	PLoS Negl Trop Dis	10.1371/journal.pntd.0011259	2023
	Detection of AmpC beta-lactamases in gram-negative bacteria.	Zhou Q, Tang M, Zhang X, Lu J, Tang X, Gao Y.	Heliyon	10.1016/j.heliyon.2022.e12245	2022
Pathogenicity	Elaboration of highly hydrophobic polymeric surface--a potential strategy to reduce the adhesion of pathogenic bacteria?	Poncin-Epaillard F, Herry JM, Marmey P, Legeay G, Debarnot D, Bellon-Fontaine MN.	Mater Sci Eng C Mater Biol Appl	10.1016/j.msec.2012.12.020	2013
	Selective Culture Medium for Screening of Fosfomycin Resistance in Enterobacterales.	Nordmann P, Sadek M, Ortiz de la Rosa JM, Pfister S, Fournier C, Poirel L.	J Clin Microbiol	10.1128/jcm.02063-21	2022
	Response of fermentation quality and microbial community of oat silage to homofermentative lactic acid bacteria inoculation.	Tahir M, Li J, Xin Y, Wang T, Chen C, Zhong Y, Zhang L, Liu H, He Y, Wen X, Yan Y.	Front Microbiol	10.3389/fmicb.2022.1091394	2022
	The Effect of Temperature and Storage Duration on the Quality and Attributes of the Breast Meat of Hens after Their Laying Periods.	Augustynska-Prejsnar A, Hanus P, Ormian M, Kacaniova M, Sokolowicz Z, Topczewska J.	Foods	10.3390/foods12234340	2023
Pathogenicity	Antibacterial susceptibility of enterobacteriaceae isolated from raw horsemeat isolated for human consumption (basashi).	Furuhata K, Ishizaki N, Fukuyama M.	Biocontrol Sci	10.4265/bio.20.19	2015
	Potential of Multiplex Polymerase Chain Reaction Performed on Protected Telescope Catheter Samples for Early Adaptation of Antimicrobial Therapy in ARDS Patients.	Razazi K, Delamaire F, Fihman V, Boujelben MA, Mongardon N, Gendreau S, de Roux Q, de Prost N, Carteaux G, Woerther PL, Mekontso Dessap A.	J Clin Med	10.3390/jcm11154366	2022
	Screening of colistin-resistant bacteria in livestock animals from France.	Hamame A, Davoust B, Hasnaoui B, Mwenebitu DL, Rolain JM, Diene SM.	Vet Res	10.1186/s13567-022-01113-1	2022
	Ecological and aromatic impact of two Gram-negative bacteria (Psychrobacter celer and Hafnia alvei) inoculated as part of the whole microbial community of an experimental smear soft cheese.	Irlinger F, Yung SA, Sarthou AS, Delbes-Paus C, Montel MC, Coton E, Coton M, Helinck S.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2011.11.022	2012
Phylogeny	Effects of feeding on different parts of Ailanthus altissima on the intestinal microbiota of Eucryptorrhynchus scrobiculatus and Eucryptorrhynchus brandti (Coleoptera: Curculionidae).	Ma TC, Guo WJ, Wen JB.	Front Microbiol	10.3389/fmicb.2022.899313	2022
	Antilisterial and Antimicrobial Effect of Salvia officinalis Essential Oil in Beef Sous-Vide Meat during Storage.	Gal R, Cmikova N, Prokopova A, Kacaniova M.	Foods	10.3390/foods12112201	2023
	Are Enterobacteriaceae and Enterococcus Isolated from Powdered Infant Formula a Hazard for Infants? A Genomic Analysis.	Parra-Flores J, Cabal-Rosel A, Daza-Prieto B, Chavarria P, Maury-Sintjago E, Rodriguez-Fernandez A, Acuna S, Ruppitsch W.	Foods	10.3390/foods11223556	2022
	New functional ligands for ficolin-3 among lipopolysaccharides of Hafnia alvei.	Swierzko A, Lukasiewicz J, Cedzynski M, Maciejewska A, Jachymek W, Niedziela T, Matsushita M, Lugowski C.	Glycobiology	10.1093/glycob/cwr119	2012
Biotechnology	Pyrosequencing analysis of microbial community and food-borne bacteria on restaurant cutting boards collected in Seri Kembangan, Malaysia, and their correlation with grades of food premises.	Abdul-Mutalib NA, Amin Nordin S, Osman M, Ishida N, Tashiro K, Sakai K, Tashiro Y, Maeda T, Shirai Y.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2015.01.022	2015
	Microbiological and cytological characterization of coelomic fluid from three captive endangered amphibian Gastrotheca species with edema syndrome: preliminary analysis.	Oleas-Paz A, Santamaria-Naranjo AC, Rojas-Carrillo M, Merino-Viteri A, Genoy-Puerto A.	BMC Res Notes	10.1186/s13104-019-4846-3	2019
Metabolism	Improving the secretion of cadaverine in Corynebacterium glutamicum by cadaverine-lysine antiporter.	Li M, Li D, Huang Y, Liu M, Wang H, Tang Q, Lu F.	J Ind Microbiol Biotechnol	10.1007/s10295-014-1409-4	2014
	Cefepime Versus Piperacillin-Tazobactam for the Treatment of Intra-Abdominal Infections Secondary to Potential AmpC Beta-Lactamase-Producing Organisms.	Gamble KC, Rose DT, Chang SY, Hodge EK, Jaso TC, Trust MD, Daley MJ.	Hosp Pharm	10.1177/00185787231170384	2023
	Modulation of Metabolome and Overall Perception of Pea Protein-Based Gels Fermented with Various Synthetic Microbial Consortia.	Ben-Harb S, Saint-Eve A, Irlinger F, Souchon I, Bonnarme P.	Foods	10.3390/foods11081146	2022
	Development and validation of main spectral profile for rapid identification of Yersinia ruckeri isolated from Atlantic salmon using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.	Ojasanya RA, Gardner IA, Groman D, Saksida S, Saab ME, Thakur KK.	Front Vet Sci	10.3389/fvets.2022.1031373	2022
	Inference of Significant Microbial Interactions From Longitudinal Metagenomics Data.	Gao X, Huynh BT, Guillemot D, Glaser P, Opatowski L.	Front Microbiol	10.3389/fmicb.2018.02319	2018
	Antimicrobial resistance of microorganisms present in periodontal diseases: A systematic review and meta-analysis.	Abe FC, Kodaira K, Motta CCB, Barberato-Filho S, Silva MT, Guimaraes CC, Martins CC, Lopes LC.	Front Microbiol	10.3389/fmicb.2022.961986	2022
Enzymology	[Comparison of routine use of two chromogenic media ChromID CPS (bioMérieux) and UriSelect4 (Bio-Rad) for the detection of Escherichia coli and major uropathogenics in urine].	Meddeb M, Maurer M, Grillon A, Scheftel JM, Jaulhac B.	Ann Biol Clin (Paris)	10.1684/abc.2014.0943	2014
Pathogenicity	Sepsis in cancer patients residing in Zimbabwe: spectrum of bacterial and fungal aetiologies and their antimicrobial susceptibility patterns.	Chinowaita F, Chaka W, Nyazika TK, Maboreke TC, Tizauone E, Mapondera P, Chitsike I, Cakana AZ, Mavenyengwa RT.	BMC Infect Dis	10.1186/s12879-020-4886-2	2020
Phylogeny	Culture-independent identification of bacteria associated with ovine 'broken mouth' periodontitis.	Riggio MP, Jonsson N, Bennett D.	Vet Microbiol	10.1016/j.vetmic.2013.06.034	2013
Phylogeny	Periodontal-disease-associated biofilm: A reservoir for pathogens of medical importance.	Vieira Colombo AP, Magalhaes CB, Hartenbach FA, Martins do Souto R, Maciel da Silva-Boghossian C.	Microb Pathog	10.1016/j.micpath.2015.09.009	2016
Enzymology	Quorum sensing activity of Hafnia alvei isolated from packed food.	Tan JY, Yin WF, Chan KG.	Sensors (Basel)	10.3390/s140406788	2014
Pathogenicity	Yokenella regensburgei in an immunocompromised host: a case report and review of the literature.	Lo YC, Chuang YW, Lin YH.	Infection	10.1007/s15010-011-0139-z	2011
	Bats (Mammalia: Chiroptera) in urban-rural interfaces: community structure associated with pathogen screening in São Paulo-the largest metropolitan region in Brazil.	Brito JEC, de Mello BGV, Gaeta NC, Batista JMN, Brito TR, Agostinho WC, Brandao PE, Heinemann MB, Dias RA.	Vet Res Commun	10.1007/s11259-023-10112-2	2023
	Analysis of Microbial Diversity and Dynamics During Bacon Storage Inoculated With Potential Spoilage Bacteria by High-Throughput Sequencing.	Li X, Xiong Q, Zhou H, Xu B, Sun Y.	Front Microbiol	10.3389/fmicb.2021.713513	2021
	Monitoring the succession of the biota grown on a selective medium for pseudomonads during storage of minced beef with molecular-based methods	Doulgeraki AI, Nychas GJE.	Food Microbiol		2013
Metabolism	A methodological approach to screen diverse cheese-related bacteria for their ability to produce aroma compounds.	Pogacic T, Maillard MB, Leclerc A, Herve C, Chuat V, Yee AL, Valence F, Thierry A.	Food Microbiol	10.1016/j.fm.2014.07.018	2015
	Alteration of indicator gut microbiota in patients with chronic sinusitis.	Michalik M, Podbielska-Kubera A, Basinska AM, Szewc M, Galecka M, Schwiertz A.	Immun Inflamm Dis	10.1002/iid3.996	2023
Phylogeny	Isolation and identification of Enterobacteriaceae from raw horsemeat intended for human consumption (Basashi).	Furuhata K, Ishizaki N, Sugi Y, Fukuyama M.	Biocontrol Sci	10.4265/bio.19.181	2014
	Factors Influencing Biofilm Formation by Salmonella enterica sv. Typhimurium, E. cloacae, E. hormaechei, Pantoea spp., and Bacillus spp. Isolated from Human Milk Determined by PCA Analysis.	Gemba M, Rosiak E, Nowak-Zyczynska Z, Kalecka P, Lodykowska E, Kolozyn-Krajewska D.	Foods	10.3390/foods11233862	2022
Enzymology	[Report of four clinical cases of Hafnia alvei bacteremia in a pediatric cardiac surgery unit].	Moreno C, Troncoso M, Coria De La P, Ledermann W, Del Valle G, Nunez C, Araya P, Fernandez J, Fernandez A.	Rev Chilena Infectol	/s0716-10182010000100006	2010
	Bacterial Cross-Transmission between Inanimate Surfaces and Patients in Intensive Care Units under Real-World Conditions: A Repeated Cross-Sectional Study.	Kuczewski E, Henaff L, Regard A, Argaud L, Lukaszewicz AC, Rimmele T, Cassier P, Fredenucci I, Loeffert-Fremiot S, Khanafer N, Vanhems P.	Int J Environ Res Public Health	10.3390/ijerph19159401	2022
	Prevalence, antibiotic resistance patterns, and biofilm formation ability of Enterobacterales recovered from food of animal origin in Egypt.	Edris SN, Hamad A, Awad DAB, Sabeq II.	Vet World	10.14202/vetworld.2023.403-413	2023
Phylogeny	Bacterial microbiota of the ocular surface of captive and free-ranging microbats: Desmodus rotundus, Diameus youngi and Artibeus lituratus.	Leigue Dos Santos L, Montiani-Ferreira F, Lima L, Lange R, de Barros Filho IR.	Vet Ophthalmol	10.1111/vop.12054	2014
Pathogenicity	Colonization of frog Rana temporaria L. urinary bladder by Gram-negative bacteria leads to decreased effect of arginine-vasotocin on water reabsorption from the urinary bladder.	Fock E, Lavrova E, Parnova R.	J Exp Zool A Ecol Genet Physiol	10.1002/jez.1812	2013
	Role of 30 kDa antigen of enteric bacterial pathogens as a possible arthritogenic factor in post-dysenteric reactive arthritis.	Singh M, Ganguli NK, Singh H, Deodhar SD, Sethi S, Sharma M.	Indian J Pathol Microbiol	10.4103/0377-4929.120373	2013
Pathogenicity	Microbial-Based Bioactive Compounds to Alleviate Inflammation in Obesity.	Apalowo OE, Adegoye GA, Obuotor TM.	Curr Issues Mol Biol	10.3390/cimb46030119	2024
Metabolism	Heat resistance of histamine-producing bacteria in irradiated tuna loins.	Enache E, Kataoka A, Black DG, Weddig L, Hayman M, Bjornsdottir-Butler K.	J Food Prot	10.4315/0362-028x.jfp-12-467	2013
Enzymology	Predominant enterobacteria on modified-atmosphere packaged meat and poultry.	Sade E, Murros A, Bjorkroth J.	Food Microbiol	10.1016/j.fm.2012.10.007	2013
	Screening of Colistin-Resistant Bacteria in Domestic Pets from France.	Hamame A, Davoust B, Rolain JM, Diene SM.	Animals (Basel)	10.3390/ani12050633	2022
Phylogeny	Comparison of identification systems for psychrotrophic bacteria isolated from raw bovine milk.	Vithanage NR, Yeager TR, Jadhav SR, Palombo EA, Datta N.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2014.07.023	2014
	Transferable integrons of Gram-negative bacteria isolated from the gut of a wild boar in the buffer zone of a national park	Mokracka J, Koczura R, Kaznowski A.	Ann Microbiol		2012
	Systematic review: The gut microbiota as a link between colorectal cancer and obesity.	Ruiz-Malagon AJ, Rodriguez-Sojo MJ, Redondo E, Rodriguez-Cabezas ME, Galvez J, Rodriguez-Nogales A.	Obes Rev	10.1111/obr.13872	2025
Enzymology	Gastrointestinal investigation of parasites and Enterobacteriaceae in loggerhead sea turtles from Italian coasts.	Pace A, Rinaldi L, Ianniello D, Borrelli L, Cringoli G, Fioretti A, Hochscheid S, Dipineto L.	BMC Vet Res	10.1186/s12917-019-2113-4	2019
	NitroSpeed-Carba NP Test for Rapid Detection and Differentiation between Different Classes of Carbapenemases in Enterobacterales.	Nordmann P, Sadek M, Demord A, Poirel L.	J Clin Microbiol	10.1128/jcm.00932-20	2020
Pathogenicity	Exploration of the Gut Microbiome in Thai Patients with Major Depressive Disorder Shows a Specific Bacterial Profile with Depletion of the Ruminococcus Genus as a Putative Biomarker.	Maes M, Vasupanrajit A, Jirakran K, Klomkliew P, Chanchaem P, Tunvirachaisakul C, Payungporn S.	Cells	10.3390/cells12091240	2023
Genetics	First Characterization of a Hafnia Phage Reveals Extraordinarily Large Burst Size and Unusual Plaque Polymorphism.	Pan L, Li D, Sun Z, Lin W, Hong B, Qin W, Xu L, Liu W, Zhou Q, Wang F, Cai R, Qian M, Tong Y.	Front Microbiol	10.3389/fmicb.2021.754331	2021
Pathogenicity	Beyond the Toll-Like Receptor 4. Structure-Dependent Lipopolysaccharide Recognition Systems: How far are we?	De Chiara S, De Simone Carone L, Cirella R, Andretta E, Silipo A, Molinaro A, Mercogliano M, Di Lorenzo F.	ChemMedChem	10.1002/cmdc.202400780	2025
	Monitoring the succession of the biota grown on a selective medium for pseudomonads during storage of minced beef with molecular-based methods.	Doulgeraki AI, Nychas GJ.	Food Microbiol	10.1016/j.fm.2012.11.017	2013
Phylogeny	Identification of the Enterobacteriaceae in Montasio cheese and assessment of their amino acid decarboxylase activity.	Maifreni M, Frigo F, Bartolomeoli I, Innocente N, Biasutti M, Marino M.	J Dairy Res	10.1017/s002202991200074x	2013
	Engineering Gut Symbionts: A Way to Promote Bee Growth?	Sattayawat P, Inwongwan S, Noirungsee N, Li J, Guo J, Disayathanoowat T.	Insects	10.3390/insects15050369	2024
	Isolation and characterization of bacteriophages specific to hydrogen-sulfide-producing bacteria.	Gong C, Heringa S, Singh R, Kim J, Jiang X.	Can J Microbiol	10.1139/cjm-2012-0245	2013
	Adverse Food Reactions in Inflammatory Bowel Disease: State of the Art and Future Perspectives.	Capobianco I, Di Vincenzo F, Puca P, Becherucci G, Mentella MC, Petito V, Scaldaferri F.	Nutrients	10.3390/nu16030351	2024
	Chemoenzymatic Synthesis of Select Intermediates and Natural Products of the Desferrioxamine E Siderophore Pathway.	Hoffmann KM, Kingsbury JS, March NL, Jang Y, Nguyen JH, Hutt MM.	Molecules	10.3390/molecules27196144	2022
	Mathematical modeling for freshness/spoilage of chicken breast using chemometric analysis.	Kim HJ, Kim HJ, Kim HC, Lee D, Jung HY, Kang T, Jo C.	Curr Res Food Sci	10.1016/j.crfs.2023.100590	2023
	Yokenella regensburgei Septicemia in a Chinese Farmer Immunosuppressed by HIV: A Case Report and Literature Review.	Chi X, Liu M, Chen Y.	Case Rep Infect Dis	10.1155/2017/5962463	2017
	Monitoring the Starvation-Survival Response of Edwardsiella piscicida and E. tarda in Freshwater Microcosms, at Various Temperatures.	Esteve C, Alcaide E.	Microorganisms	10.3390/microorganisms10051043	2022
	Identification and Genomic Characterization of Escherichia albertii in Migratory Birds from Poyang Lake, China.	Liu Q, Bai X, Yang X, Fan G, Wu K, Song W, Sun H, Chen S, Chen H, Xiong Y.	Pathogens	10.3390/pathogens12010009	2022
	Sepsis caused by multidrug-resistant klebsiella pneumoniae infection in a 23-year-old burn patient: case report and literature review.	Freystatter C, Radtke C, Ihra G, Thalhammer F, Fochtmann-Frana A.	Ann Burns Fire Disasters		2018
	Screening commercial teat disinfectants against bacteria isolated from bovine milk using disk diffusion.	Fitzpatrick SR, Garvey M, Jordan K, Flynn J, O'Brien B, Gleeson D.	Vet World	10.14202/vetworld.2019.629-637	2019
Phylogeny	Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system.	Richter SS, Sercia L, Branda JA, Burnham CA, Bythrow M, Ferraro MJ, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Rychert JA, Westblade LF, Procop GW.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-013-1912-y	2013
	Impact of IBD-Associated Dysbiosis on Bacterial Quorum Sensing Mediated by Acyl-Homoserine Lactone in Human Gut Microbiota.	Grellier N, Suzuki MT, Brot L, Rodrigues AMS, Humbert L, Escoubeyrou K, Rainteau D, Grill JP, Lami R, Seksik P.	Int J Mol Sci	10.3390/ijms232315404	2022
Metabolism	Mechanisms of Glucose Absorption in the Small Intestine in Health and Metabolic Diseases and Their Role in Appetite Regulation.	Gromova LV, Fetissov SO, Gruzdkov AA.	Nutrients	10.3390/nu13072474	2021
Pathogenicity	Diversity and Local Coadaptation of Escherichia coli and Coliphages From Small Ruminants.	Molina F, Simancas A, Tabla R, Gomez A, Roa I, Rebollo JE.	Front Microbiol	10.3389/fmicb.2020.564522	2020
	Efficacy of nutrition education for the increase of symbiotic intake on nutritional and metabolic status in schizophrenic spectrum disorders: A two-arm protocol.	Sevillano-Jimenez A, Molina-Recio G, Garcia-Mellado JA, Garcia-Rodriguez M, Molina-Luque R, Romero-Saldana M.	Front Nutr	10.3389/fnut.2022.912783	2022
Pathogenicity	Superbugs in the supermarket? Assessing the rate of contamination with third-generation cephalosporin-resistant gram-negative bacteria in fresh Australian pork and chicken.	McLellan JE, Pitcher AJ, Ballard SA, Grabsch EA, Bell JM, Barton M, Grayson ML.	Antimicrob Resist Infect Control	10.1186/s13756-018-0322-4	2018
Biotechnology	Evaluation of the spoilage potential of bacteria isolated from spoiled raw salmon (Salmo salar) fillets stored under modified atmosphere packaging.	Mace S, Joffraud JJ, Cardinal M, Malcheva M, Cornet J, Lalanne V, Chevalier F, Serot T, Pilet MF, Dousset X.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2012.10.013	2013
	Prevalence and Molecular Characterization of Extended-Spectrum beta-Lactamase Producing Enterobacterales in Healthy Community Dogs in Israel.	Shnaiderman-Torban A, Navon-Venezia S, Baron H, Abu-Ahmad W, Arielly H, Zizelski Valenci G, Nissan I, Paitan Y, Steinman A.	Antibiotics (Basel)	10.3390/antibiotics11081069	2022
	Prevalence of AmpC, ESBL, and colistin resistance genes in Enterobacterales isolated from ready-to-eat food in Algeria.	Zaatout N, Al-Mustapha AI, Bouaziz A, Ouchene R, Heikinheimo A.	Braz J Microbiol	10.1007/s42770-023-01082-3	2023
Pathogenicity	[Gram-negative bacteria influence on the ability of the arginine-vasotocin to stimulate osmotic permeability of the frog urinary bladder epithelium].	Lavrova EA, Gretchenko LS, Parnova RG, Fok EM.	Ross Fiziol Zh Im I M Sechenova		2012
	Antimicrobial, Antioxidant, Sensory Properties, and Emotions Induced for the Consumers of Nutraceutical Beverages Developed from Technological Functionalised Food Industry By-Products.	Zokaityte E, Lele V, Starkute V, Zavistanaviciute P, Cernauskas D, Klupsaite D, Ruzauskas M, Alisauskaite J, Baltrusaityte A, Dapsas M, Siriakovaite K, Trunce S, Guine RPF, Viskelis P, Steibliene V, Bartkiene E.	Foods	10.3390/foods9111620	2020
Biotechnology	Microbial diversity and dynamics during the production of May bryndza cheese.	Pangallo D, Sakova N, Korenova J, Puskarova A, Krakova L, Valik L, Kuchta T.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2013.10.015	2014
	Antibiotic resistance of Gram-negative benthic bacteria isolated from the sediments of Kardzhali Dam (Bulgaria).	Iliev I, Marhova M, Gochev V, Tsankova M, Trifonova S.	Biotechnol Biotechnol Equip	10.1080/13102818.2014.998160	2015
Enzymology	Identification of Yersinia ruckeri from diseased salmonid fish by Fourier transform infrared spectroscopy.	Wortberg F, Nardy E, Contzen M, Rau J.	J Fish Dis	10.1111/j.1365-2761.2011.01317.x	2012
	Strategy for Local Plant-Based Material Valorisation to Higher-Value Feed Stock for Piglets.	Badaras S, Ruzauskas M, Gruzauskas R, Zokaityte E, Starkute V, Mockus E, Klementaviciute J, Bartkevics V, Vadopalas L, Klupsaite D, Dauksiene A, Zokaityte G, Mickiene R, Bartkiene E.	Animals (Basel)	10.3390/ani12091092	2022
	Outbreak of OXA-48-producing Enterobacterales in a haematological ward associated with an uncommon environmental reservoir, France, 2016 to 2019.	Jolivet S, Couturier J, Vuillemin X, Gouot C, Nesa D, Adam M, Brissot E, Mohty M, Bonnin RA, Dortet L, Barbut F.	Euro Surveill	10.2807/1560-7917.es.2021.26.21.2000118	2021
Phylogeny	Microbiology and Epidemiology of Escherichia albertii-An Emerging Elusive Foodborne Pathogen.	Muchaamba F, Barmettler K, Treier A, Houf K, Stephan R.	Microorganisms	10.3390/microorganisms10050875	2022
	Temperature influences the expression of fimbriae and flagella in Hafnia alvei strains: an immunofluorescence study.	Padilla D, Acosta F, Garcia JA, Real F, Vivas JR.	Arch Microbiol	10.1007/s00203-008-0442-y	2009
Enzymology	A case of bacteremia caused by Hafnia paralvei.	Osuka H, Hitomi S, Koganemaru H, Kaneko T.	J Infect Chemother	10.1007/s10156-011-0255-9	2011
	Invasion and intracellular survival of Hafnia alvei strains in human epithelial cells.	Padilla D, Acosta F, Bravo J, Grasso V, Real F, Vivas J.	J Appl Microbiol	10.1111/j.1365-2672.2008.03884.x	2008
	Phenotypic Detection and Differentiation of Carbapenemase Classes Including OXA-48-Like Enzymes in Enterobacterales and Pseudomonas aeruginosa by a Highly Specialized Micronaut-S Microdilution Assay.	Pfennigwerth N, Gatermann SG, Korber-Irrgang B, Honings R.	J Clin Microbiol	10.1128/jcm.00171-20	2020
Metabolism	Biofilm formation and acyl homoserine lactone production in Hafnia alvei isolated from raw milk.	Viana ES, Campos ME, Ponce AR, Mantovani HC, Vanetti MC.	Biol Res	/s0716-97602009000400004	2009
	Screening for fecal carriage of MCR-producing Enterobacteriaceae in healthy humans and primary care patients.	Zurfluh K, Stephan R, Widmer A, Poirel L, Nordmann P, Nuesch HJ, Hachler H, Nuesch-Inderbinen M.	Antimicrob Resist Infect Control	10.1186/s13756-017-0186-z	2017
	High-Frequency Chest Wall Oscillation in Patients with COVID-19: A Pilot Feasibility Study.	Celik M, Yayik AM, Kerget B, Kerget F, Doymus O, Aksakal A, Ozmen S, Aslan MH, Uzun Y.	Eurasian J Med	10.5152/eurasianjmed.2022.21048	2022
Enzymology	Prevalence of plasmid-mediated AmpC in Enterobacteriaceae isolated from humans and from retail meat in Zagazig, Egypt.	Rensing KL, Abdallah HM, Koek A, Elmowalid GA, Vandenbroucke-Grauls CMJE, Al Naiemi N, van Dijk K.	Antimicrob Resist Infect Control	10.1186/s13756-019-0494-6	2019
	Molecular Epidemiological Characterisation of ESBL- and Plasmid-Mediated AmpC-Producing Escherichia coli and Klebsiella pneumoniae at Kamuzu Central Hospital, Lilongwe, Malawi.	Choonara FE, Haldorsen BC, Janice J, Mbanga J, Ndhlovu I, Saulosi O, Maida T, Lampiao F, Simonsen GS, Essack SY, Sundsfjord A.	Trop Med Infect Dis	10.3390/tropicalmed7090245	2022
	Low Levels of Hive Stress Are Associated with Decreased Honey Activity and Changes to the Gut Microbiome of Resident Honey Bees.	Fernandes KE, Stanfield B, Frost EA, Shanahan ER, Susantio D, Dong AZ, Tran TD, Cokcetin NN, Carter DA.	Microbiol Spectr	10.1128/spectrum.00742-23	2023
	Bacteroides uniformis CECT 7771 requires adaptive immunity to improve glucose tolerance but not to prevent body weight gain in diet-induced obese mice.	Romani-Perez M, Lopez-Almela I, Bullich-Vilarrubias C, Evtoski Z, Benitez-Paez A, Sanz Y.	Microbiome	10.1186/s40168-024-01810-3	2024
Enzymology	Graft versus host disease-related Hafnia alvei colonization and probable infection.	Savini V, Di Bartolomeo E, Catavitello C, Talia M, Manna A, Febbo F, Balbinot A, Di Bonaventura G, Di Bartolomeo P, Piccolomini R, D'Antonio D.	J Med Microbiol	10.1099/jmm.0.2008/001164-0	2008
	Managing Microbiota Activity of Apis mellifera with Probiotic (Bactocell®) and Antimicrobial (Fumidil B®) Treatments: Effects on Spring Colony Strength	Gaubert J, Mercier P, Martin G, Giovenazzo P, Derome N.	Microorganisms		2024
	Pseudoaneurysm of the ascending aorta: case report of a donor-derived Pseudomonas infection in a heart transplant recipient.	Kugler S, Polos M, Kiraly A, Pataki A, Koppanyi A, Varga T, Szakal-Toth Z, Parazs N, Teszak T, Tarjanyi Z, Prinz G, Hartyanszky I, Szabolcs Z, Merkely B, Sax B.	BMC Infect Dis	10.1186/s12879-021-06557-y	2021
	Exploring Connections between Oral Microbiota, Short-Chain Fatty Acids, and Specific Cancer Types: A Study of Oral Cancer, Head and Neck Cancer, Pancreatic Cancer, and Gastric Cancer.	Nouri Z, Choi SW, Choi IJ, Ryu KW, Woo SM, Park SJ, Lee WJ, Choi W, Jung YS, Myung SK, Lee JH, Park JY, Praveen Z, Woo YJ, Park JH, Kim MK.	Cancers (Basel)	10.3390/cancers15112898	2023
	Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples.	Rhoads DD, Pournaras S, Leber A, Balada-Llasat JM, Harrington A, Sambri V, She R, Berry GJ, Daly J, Good C, Tarpatzi A, Everhart K, Henry T, McKinley K, Zannoli S, Pak P, Zhang F, Barr R, Holmberg K, Kensinger B, Lu DY.	J Clin Microbiol	10.1128/jcm.01891-22	2023
	Gene clusters of Hafnia alvei strain FB1 important in survival and pathogenesis: a draft genome perspective.	Tan JY, Yin WF, Chan KG.	Gut Pathog	10.1186/1757-4749-6-29	2014
	Increased IgA and IgM responses against gut commensals in chronic depression: further evidence for increased bacterial translocation or leaky gut.	Maes M, Kubera M, Leunis JC, Berk M.	J Affect Disord	10.1016/j.jad.2012.02.023	2012
Pathogenicity	Impact on disinfection efficiency of cell load and of planktonic/adherent/detached state: case of Hafnia alvei inactivation by plasma activated water.	Kamgang-Youbi G, Herry JM, Brisset JL, Bellon-Fontaine MN, Doubla A, Naitali M.	Appl Microbiol Biotechnol	10.1007/s00253-008-1641-9	2008
	Silent Genes: Antimicrobial Resistance and Antibiotic Production.	Stasiak M, Mackiw E, Kowalska J, Kucharek K, Postupolski J.	Pol J Microbiol	10.33073/pjm-2021-040	2021
	Diversity of Aerobic Bacteria Isolated from Oral and Cloacal Cavities from Free-Living Snakes Species in Costa Rica Rainforest.	Artavia-Leon A, Romero-Guerrero A, Sancho-Blanco C, Rojas N, Umana-Castro R.	Int Sch Res Notices	10.1155/2017/8934285	2017
	Characterisation of the spoilage microbiota in raw salmon (Salmo salar) steaks stored under vacuum or modified atmosphere packaging combining conventional methods and PCR-TTGE.	Mace S, Cornet J, Chevalier F, Cardinal M, Pilet MF, Dousset X, Joffraud JJ.	Food Microbiol	10.1016/j.fm.2011.10.013	2012
Metabolism	The bactericidal activity of normal human serum against Enterobacteriaceae rods with lipopolysaccharides possessing O-antigens composed of mannan.	Tichaczek-Goska D, Witkowska D, Cisowska A, Jankowski S, Hendrich AB.	Adv Clin Exp Med		2012
Pathogenicity	Prevalence of Mycotoxins and Endotoxins in Total Mixed Rations and Different Types of Ensiled Forages for Dairy Cows in Lithuania.	Vaiciuliene G, Bakutis B, Jovaisiene J, Falkauskas R, Gerulis G, Kerziene S, Baliukoniene V.	Toxins (Basel)	10.3390/toxins13120890	2021
	Conjugative plasmidic AmpC detected in Escherichia coli, Proteus mirabilis and Klebsiella pneumoniae human clinical isolates from Portugal.	Santiago GS, Goncalves D, da Silva Coelho I, de Mattos de Oliveira Coelho S, Neto Ferreira H.	Braz J Microbiol	10.1007/s42770-020-00355-5	2020
Enzymology	Pan-Genomics of Escherichia albertii for Antibiotic Resistance Profiling in Different Genome Fractions and Natural Product Mediated Intervention: In Silico Approach.	Jalal K, Khan K, Hayat A, Alnasser SM, Meshal A, Basharat Z.	Life (Basel)	10.3390/life13020541	2023
Pathogenicity	Antibiotic resistance and adherence properties of Hafnia alvei clinical isolates: a 19-month study in the hospital of Orléans, France.	Lancelevee J, Bret L, David K, Di Martino P.	J Chemother	10.1179/joc.2007.19.6.677	2007
	Influence of environmental conditions on biofilm formation by Hafnia alvei strains.	Vivas J, Padilla D, Real F, Bravo J, Grasso V, Acosta F.	Vet Microbiol	10.1016/j.vetmic.2007.11.007	2008
	Characterization of Two Parabacteroides distasonis Candidate Strains as New Live Biotherapeutics against Obesity.	Cuffaro B, Boutillier D, Desramaut J, Jablaoui A, Werkmeister E, Trottein F, Waligora-Dupriet AJ, Rhimi M, Maguin E, Grangette C.	Cells	10.3390/cells12091260	2023
	Escherichia albertii and Hafnia alvei are candidate enteric pathogens with divergent effects on intercellular tight junctions.	Donato KA, Zareie M, Jassem AN, Jandu N, Alingary N, Carusone SC, Johnson-Henry KC, Sherman PM.	Microb Pathog	10.1016/j.micpath.2008.09.004	2008
Biotechnology	Isolation of Hafnia species from kimchi.	Kwon EA, Kim M.	J Microbiol Biotechnol	10.4014/jmb.0807.416	2009
	First total synthesis of a pentasaccharide repeating unit of the O-antigen of Hafnia alvei PCM 1529.	Mukherjee C, Misra AK.	Glycoconj J	10.1007/s10719-007-9061-0	2008
	Alginate/Pectin Film Containing Extracts Isolated from Cranberry Pomace and Grape Seeds for the Preservation of Herring.	Urbonaviciute G, Dygle G, Cernauskas D, Sipailiene A, Venskutonis PR, Leskauskaite D.	Foods	10.3390/foods12081678	2023
	Influence of Selected Factors on Biofilm Formation by Salmonella enterica Strains.	Bialucha A, Gospodarek-Komkowska E, Kwiecinska-Pirog J, Skowron K.	Microorganisms	10.3390/microorganisms9010043	2020
	A comprehensive, large-scale analysis of "terroir" cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors.	Irlinger F, Mariadassou M, Dugat-Bony E, Rue O, Neuveglise C, Renault P, Rifa E, Theil S, Loux V, Cruaud C, Gavory F, Barbe V, Lasbleiz R, Gaucheron F, Spelle C, Delbes C.	ISME Commun	10.1093/ismeco/ycae095	2024
	The microbial communities and natural fermentation quality of ensiling oat (Avena sativa L.) harvest from different elevations on the Qinghai-Tibet Plateau.	Bao Y, Yangzong Z, Yuan Z, Shi R, Feng K, Xin P, Song T.	Front Microbiol	10.3389/fmicb.2022.1108890	2022
	Avian pathogenic Escherichia coli: Epidemiology, virulence and pathogenesis, diagnosis, pathophysiology, transmission, vaccination, and control.	Khairullah AR, Afnani DA, Riwu KHP, Widodo A, Yanestria SM, Moses IB, Effendi MH, Ramandinianto SC, Wibowo S, Fauziah I, Kusala MKJ, Fauzia KA, Furqoni AH, Raissa R.	Vet World	10.14202/vetworld.2024.2747-2762	2024
Enzymology	A deceptive case of cellulitis caused by a Gram-negative pathogen.	Bhowmick T, Weinstein MP.	J Clin Microbiol	10.1128/jcm.02975-12	2013
	Microbial inactivation using plasma-activated water obtained by gliding electric discharges.	Kamgang-Youbi G, Herry JM, Meylheuc T, Brisset JL, Bellon-Fontaine MN, Doubla A, Naitali M.	Lett Appl Microbiol	10.1111/j.1472-765x.2008.02476.x	2009
	Trend of Bacterial Uropathogens and Their Susceptibility Pattern: Study of Single Academic High-Volume Center in Italy (2015-2019).	Serretiello E, Folliero V, Santella B, Giordano G, Santoro E, De Caro F, Pagliano P, Ferro M, Aliberti SM, Capunzo M, Galdiero M, Franci G, Boccia G.	Int J Microbiol	10.1155/2021/5541706	2021
	Microbiota-gut-brain axis in binge-eating disorder: Towards microbiome-based therapies.	Schneider E, Leigh SJ, Lynch CMK, Hilbert A, Clarke G, Higgs S, Cryan JF.	Neurosci Appl	10.1016/j.nsa.2024.104088	2024
	Characteristics of Unripened Cow Milk Curd Cheese Enriched with Raspberry (Rubus idaeus), Blueberry (Vaccinium myrtillus) and Elderberry (Sambucus nigra) Industry By-Products.	Starkute V, Lukseviciute J, Klupsaite D, Mockus E, Klementaviciute J, Rocha JM, Ozogul F, Ruzauskas M, Viskelis P, Bartkiene E.	Foods	10.3390/foods12152860	2023
Biotechnology	Characterization of the Enterobacteriaceae community that developed during storage of minced beef under aerobic or modified atmosphere packaging conditions.	Doulgeraki AI, Paramithiotis S, Nychas GJ.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2010.11.030	2011
	Occurrence of urinary tract infection in adolescent and adult women of shanty town in Dhaka City, Bangladesh.	Rahman SR, Ahmed MF, Begum A.	Ethiop J Health Sci	10.4314/ejhs.v24i2.7	2014
Phylogeny	Rapid Detection and Characterization of Carbapenemases in Enterobacterales with a New Modified Carbapenem Inactivation Method, mCIMplus.	Petit M, Camelena F, Cointe A, Poncin T, Merimeche M, Bonacorsi S, Birgy A, Bercot B.	J Clin Microbiol	10.1128/jcm.01370-20	2020
	Psychobiotics and fecal microbial transplantation for autism and attention-deficit/hyperactivity disorder: microbiome modulation and therapeutic mechanisms.	Kwak MJ, Kim SH, Kim HH, Tanpure R, Kim JI, Jeon BH, Park HK.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1238005	2023
	Prevalence and characterization of beta-lactamase-producing Escherichia coli isolates from a tertiary care hospital in India.	Govindaswamy A, Bajpai V, Khurana S, Aravinda A, Batra P, Malhotra R, Mathur P.	J Lab Physicians	10.4103/jlp.jlp_122_18	2019
	Honeybee (Apis mellifera)-associated bacterial community affected by American foulbrood: detection of Paenibacillus larvae via microbiome analysis.	Erban T, Ledvinka O, Kamler M, Nesvorna M, Hortova B, Tyl J, Titera D, Markovic M, Hubert J.	Sci Rep	10.1038/s41598-017-05076-8	2017
	Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli.	Anjum M, Madsen JS, Nesme J, Jana B, Wiese M, Jasinskyte D, Nielsen DS, Sorensen SJ, Dalsgaard A, Moodley A, Bortolaia V, Guardabassi L.	Antimicrob Agents Chemother	10.1128/aac.02528-18	2019
Enzymology	[Gene cloning, expression and characterization of a novel phytase from Hafnia alvei].	Gu WN, Huang HQ, Yang PL, Luo HY, Meng K, Wang YR, Yao B.	Sheng Wu Gong Cheng Xue Bao		2007
	The ability of biogenic amines and ammonia production by single bacterial cultures	Ozogul F, Ozogul Y.	Eur Food Res Technol	10.1007/s00217-006-0429-3	2007
	First European Erwinia amylovora Lytic Bacteriophage Cocktails Effective in the Host: Characterization and Prospects for Fire Blight Biocontrol.	Biosca EG, Delgado Santander R, Moran F, Figas-Segura A, Vazquez R, Catala-Senent JF, Alvarez B.	Biology (Basel)	10.3390/biology13030176	2024
Pathogenicity	Rapid Detection of Polymyxin-Resistant Enterobacteriaceae from Blood Cultures.	Jayol A, Dubois V, Poirel L, Nordmann P.	J Clin Microbiol	10.1128/jcm.00918-16	2016
	Young-infant sepsis combined with urinary tract infection due to Hafnia alvei.	Liu CH, Lin WJ, Wang CC, Lee KL, Tsai MC.	J Formos Med Assoc	10.1016/s0929-6646(09)60365-x	2007
	Multicentre evaluation of a selective isolation protocol for detection of mcr-positive E. coli and Salmonella spp. in food-producing animals and meat.	Perrin-Guyomard A, Granier SA, Slettemeas JS, Anjum M, Randall L, AbuOun M, Pauly N, Irrgang A, Hammerl JA, Kjeldgaard JS, Hammerum A, Franco A, Skarzynska M, Kaminska E, Wasyl D, Dierikx C, Borjesson S, Geurts Y, Haenni M, Veldman K.	Lett Appl Microbiol	10.1111/lam.13717	2022
Pathogenicity	Evaluation of the Direct MacConkey Method for Identification of Carbapenem-Resistant Gram-Negative Organisms from Rectal Swabs: Reevaluating Zone Diameter Cutoffs.	Workneh M, Wang R, Kazmi AQ, Chambers KK, Opene BNA, Lewis S, Goodman K, Tamma PD, Carroll KC, Milstone AM, Simner PJ.	J Clin Microbiol	10.1128/jcm.01127-19	2019
	Multidrug-Resistant ESBL/AmpC-Producing Klebsiella pneumoniae Isolated from Healthy Thoroughbred Racehorses in Japan.	Sukmawinata E, Uemura R, Sato W, Thu Htun M, Sueyoshi M.	Animals (Basel)	10.3390/ani10030369	2020
Metabolism	Dietary l-Tryptophan Supplementation Enhances the Intestinal Mucosal Barrier Function in Weaned Piglets: Implication of Tryptophan-Metabolizing Microbiota.	Liang H, Dai Z, Kou J, Sun K, Chen J, Yang Y, Wu G, Wu Z.	Int J Mol Sci	10.3390/ijms20010020	2018
	The Involvement of Thiamine Uptake in the Virulence of Edwardsiella piscicida.	Liu X, Wang X, Sun B, Sun L.	Pathogens	10.3390/pathogens11040464	2022
	Screening Method to Evaluate Amino Acid-Decarboxylase Activity of Bacteria Present in Spanish Artisanal Ripened Cheeses.	Espinosa-Pesqueira D, Roig-Sagues AX, Hernandez-Herrero MM.	Foods	10.3390/foods7110182	2018
Phylogeny	Selective testing of ß-galactosidase activity in the laboratory identification of Salmonella and Shigella species.	Boadi S, Wren MW, Morris-Jones S.	J Clin Pathol	10.1136/jcp.2010.079723	2010
	Lactic Acid Bacteria Adjunct Cultures Exert a Mitigation Effect against Spoilage Microbiota in Fresh Cheese.	Bassi D, Gazzola S, Sattin E, Dal Bello F, Simionati B, Cocconcelli PS.	Microorganisms	10.3390/microorganisms8081199	2020
Enzymology	Isolation of toxigenic Hafnia alvei from a probable case of hemolytic uremic syndrome.	Crandall C, Abbott SL, Zhao YQ, Probert W, Janda JM.	Infection	10.1007/s15010-006-5088-6	2006
	Endotracheal tube biofilm in critically ill patients during the COVID-19 pandemic : description of an underestimated microbiological compartment.	Maldiney T, Pineau V, Neuwirth C, Ouzen L, Eberl I, Jeudy G, Dalac S, Piroth L, Blot M, Sautour M, Dalle F, Abdulmalak C, Ter Schiphorst R, Pugliesi PS, Poussant T, Ogier-Desserrey A, Fournel I, de Giraud d'Agay M, Jacquier M, Labruyere M, Aptel F, Roudaut JB, Vieille T, Andreu P, Prin S, Charles PE, Hamet M, Quenot JP.	Sci Rep	10.1038/s41598-022-26560-w	2022
Metabolism	Histamine, cadaverine, and putrescine produced in vitro by enterobacteriaceae and pseudomonadaceae isolated from spinach.	Lavizzari T, Breccia M, Bover-Cid S, Vidal-Carou MC, Veciana-Nogues MT.	J Food Prot	10.4315/0362-028x-73.2.385	2010
	Wild Micromammals as Bioindicators of Antibiotic Resistance in Ecopathology in Northern Italy.	Zanardi G, Iemmi T, Spadini C, Taddei S, Cavirani S, Cabassi CS.	Animals (Basel)	10.3390/ani10071184	2020
Enzymology	Synthesis and Deployment of an Elusive Fluorovinyl Cation Equivalent: Access to Quaternary alpha-(1'-Fluoro)vinyl Amino Acids as Potential PLP Enzyme Inactivators.	McCune CD, Beio ML, Sturdivant JM, de la Salud-Bea R, Darnell BM, Berkowitz DB.	J Am Chem Soc	10.1021/jacs.7b04690	2017
Metabolism	Production of biogenic amines "in vitro" in relation to the growth phase by Enterobacteriaceae species isolated from traditional sausages.	Lorenzo JM, Cachaldora A, Fonseca S, Gomez M, Franco I, Carballo J.	Meat Sci	10.1016/j.meatsci.2010.06.005	2010
Metabolism	The Evasive Enemy: Insights into the Virulence and Epidemiology of the Emerging Attaching and Effacing Pathogen Escherichia albertii.	Bhatt S, Egan M, Critelli B, Kouse A, Kalman D, Upreti C.	Infect Immun	10.1128/iai.00254-18	2019
Phylogeny	Characterization of Microbiological Quality of Whole and Gutted Baltic Herring.	Huotari J, Tsitko I, Honkapaa K, Alakomi HL.	Foods	10.3390/foods11040492	2022
	The Role of Nutraceuticals and Probiotics in Addition to Lifestyle Intervention in the Management of Childhood Obesity-Part 1: Metabolic Changes.	Street ME, Casadei F, Di Bari ER, Ferraboschi F, Montani AG, Shulhai AM, Esposito S.	Nutrients	10.3390/nu17101630	2025
Pathogenicity	Risk factors for third-generation cephalosporin resistant Enterobacteriaceae in gestational urine cultures: A retrospective cohort study based on centralized electronic health records.	Guri A, Flaks-Manov N, Ghilai A, Hoshen M, Flidel Rimon O, Ciobotaro P, Zimhony O.	PLoS One	10.1371/journal.pone.0226515	2020
Phylogeny	[Taxonomic characteristics and physiological properties of microorganisms from the gut of pike (Esox lucius)].	Izveskova GI, Nemtseva NV, Plotnikov AO.	Izv Akad Nauk Ser Biol	10.1134/s1062359008060058	2008
	Clinical outcome of wild-type AmpC-producing Enterobacterales infection in critically ill patients treated with beta-lactams: a prospective multicenter study.	Mounier R, Le Guen R, Woerther PL, Nacher M, Bonnefon C, Mongardon N, Langeron O, Levesque E, Couffin S, Houcke S, Wolff M, Roujansky A, Schimpf C, Mekontso Dessap A, Cook F, Razazi K, Kallel H.	Ann Intensive Care	10.1186/s13613-022-01079-5	2022
	The Mobilizable Plasmid P3 of Salmonella enterica Serovar Typhimurium SL1344 Depends on the P2 Plasmid for Conjugative Transfer into a Broad Range of Bacteria In Vitro and In Vivo.	Gaissmaier MS, Laganenka L, Herzog MK, Bakkeren E, Hardt WD.	J Bacteriol	10.1128/jb.00347-22	2022
	Does Consumption of Fermented Foods Modify the Human Gut Microbiota?	Stiemsma LT, Nakamura RE, Nguyen JG, Michels KB.	J Nutr	10.1093/jn/nxaa077	2020
	Optimizing Nanopore Sequencing for Rapid Detection of Microbial Species and Antimicrobial Resistance in Patients at Risk of Surgical Site Infections.	Whittle E, Yonkus JA, Jeraldo P, Alva-Ruiz R, Nelson H, Kendrick ML, Grys TE, Patel R, Truty MJ, Chia N.	mSphere	10.1128/msphere.00964-21	2022
Phylogeny	Genetic Diversity of O-Antigens in Hafnia alvei and the Development of a Suspension Array for Serotype Detection.	Duan Z, Niedziela T, Lugowski C, Cao B, Wang T, Xu L, Yang B, Liu B, Wang L.	PLoS One	10.1371/journal.pone.0155115	2016
	Identification of a non-pathogenic surrogate organism for chlorine dioxide (ClO2) gas treatment.	Kim JM, Linton RH.	Food Microbiol	10.1016/j.fm.2008.02.002	2008
Enzymology	Gut Microbiota Alteration is Characterized by a Proteobacteria and Fusobacteria Bloom in Kwashiorkor and a Bacteroidetes Paucity in Marasmus.	Pham TP, Tidjani Alou M, Bachar D, Levasseur A, Brah S, Alhousseini D, Sokhna C, Diallo A, Wieringa F, Million M, Raoult D.	Sci Rep	10.1038/s41598-019-45611-3	2019
	Histamine Content in Rennet Ripening Cheeses During Storage at Different Temperatures and Times.	Madejska A, Michalski M, Pawul-Gruba M, Osek J.	J Vet Res	10.1515/jvetres-2018-0009	2018
Metabolism	Decolorization and discovery of metabolic pathway for the degradation of Mordant Black 11 dye by Klebsiella sp. MB398.	Tahir U, Yasmin A.	Braz J Microbiol	10.1007/s42770-021-00470-x	2021
	Structure and function of an N-acetyltransferase from the human pathogen Acinetobacter baumannii isolate BAL_212.	Herkert NR, Thoden JB, Holden HM.	Proteins	10.1002/prot.26334	2022
	Enrichment of native plastic-associated biofilm communities to enhance polyester degrading activity.	Howard SA, Carr CM, Sbahtu HI, Onwukwe U, Lopez MJ, Dobson ADW, McCarthy RR.	Environ Microbiol	10.1111/1462-2920.16466	2023
Enzymology	Technology-induced selection towards the spoilage microbiota of artisan-type cooked ham packed under modified atmosphere.	Vasilopoulos C, De Maere H, De Mey E, Paelinck H, De Vuyst L, Leroy F.	Food Microbiol	10.1016/j.fm.2009.08.008	2010
Metabolism	Human norovirus binding to select bacteria representative of the human gut microbiota.	Almand EA, Moore MD, Outlaw J, Jaykus LA.	PLoS One	10.1371/journal.pone.0173124	2017
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Enzymology	[The analysis of the bacterial and fungal flora in maxillary sinuses in patients operated due to FESS method].	Olszewski J, Milonski J.	Otolaryngol Pol	10.1016/s0030-6657(08)70292-0	2008
Metabolism	Virulence factors and pathogenicity of Hafnia alvei for gilthead seabream, Sparus aurata L.	Padilla D, Real F, Gomez V, Sierra E, Acosta B, Deniz S, Acosta F.	J Fish Dis	10.1111/j.1365-2761.2005.00643.x	2005
	Morbidity and mortality related to pneumonia and TRACHEOBRONCHITIS in ICU after lung transplantation.	Tanaka S, Geneve C, Tebano G, Grall N, Piednoir P, Bronchard R, Godement M, Atchade E, Augustin P, Mal H, Castier Y, Montravers P, Desmard M.	BMC Pulm Med	10.1186/s12890-018-0605-9	2018
Enzymology	[Hafnia alvei in a rare case of severe pneumonia in a postanesthesia recovery unit].	Redondo J, Maseda E, Riquelme A, Alday E, Una R, Criado A.	Rev Esp Anestesiol Reanim		2005
	Effects of Proteus vulgaris growth on the establishment of a cheese microbial community and on the production of volatile aroma compounds in a model cheese.	Deetae P, Mounier J, Bonnarme P, Spinnler HE, Irlinger F, Helinck S.	J Appl Microbiol	10.1111/j.1365-2672.2009.04315.x	2009
Metabolism	Impact of N-Acyl-Homoserine Lactones, Quorum Sensing Molecules, on Gut Immunity.	Coquant G, Grill JP, Seksik P.	Front Immunol	10.3389/fimmu.2020.01827	2020
	Clinical characteristics of nosocomial and community-acquired extraintestinal infections caused by Hafnia alvei.	Rodriguez-Guardado A, Boga JA, Diego ID, Ordas J, Alvarez ME, Perez F.	Scand J Infect Dis	10.1080/00365540500333699	2005
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Pathogenicity	Comparative evaluation of the UMIC Colistine kit to assess MIC of colistin of gram-negative rods.	Bardet L, Okdah L, Le Page S, Baron SA, Rolain JM.	BMC Microbiol	10.1186/s12866-019-1424-8	2019
Enzymology	Abdominal abscess and Hafnia alvei septicemia occurring during the aplastic phase after autologous stem-cell transplantation in a patient with diffuse large B-cell lymphoma.	Candoni A, Trevisan R, Fili C, Tiribelli M, Fanin R.	J Infect Chemother	10.1007/s10156-004-0341-3	2004
	Cutaneous and Pulmonary Mucormycosis in Rag1- and Il2rg-deficient Rats.	Sarfaty AE, Compton SR, Smith PC, Zeiss CJ.	Comp Med	10.30802/aalas-cm-20-000015	2020
	Transferable integrons of Gram-negative bacteria isolated from the gut of a wild boar in the buffer zone of a national park.	Mokracka J, Koczura R, Kaznowski A.	Ann Microbiol	10.1007/s13213-011-0369-4	2012
	Complex Analysis of Vanillin and Syringic Acid as Natural Antimicrobial Agents against Staphylococcus epidermidis Biofilms.	Minich A, Levarski Z, Mikulasova M, Straka M, Liptakova A, Stuchlik S.	Int J Mol Sci	10.3390/ijms23031816	2022
	Formation of biogenic amines by Gram-negative rods isolated from fresh, spoiled, VP-packed and MAP-packed herring (Clupea harengus)	Ozogul F, Ozogul Y.	Eur Food Res Technol	10.1007/s00217-005-0064-4	2005
Biotechnology	Potentially pathogenic bacteria isolated from Paipa cheese and its susceptibility profiles to antibiotics and biocides.	Castellanos-Rozo J, Perez Pulido R, Grande MJ, Lucas R, Galvez A.	Braz J Microbiol	10.1007/s42770-021-00522-2	2021
	Investigation of the Antibacterial Activity and in vivo Cytotoxicity of Biogenic Silver Nanoparticles as Potent Therapeutics.	Hossain MM, Polash SA, Takikawa M, Shubhra RD, Saha T, Islam Z, Hossain S, Hasan MA, Takeoka S, Sarker SR.	Front Bioeng Biotechnol	10.3389/fbioe.2019.00239	2019
Enzymology	Molecular identification of mesophilic and psychrotrophic bacteria from raw cow's milk.	Ercolini D, Russo F, Ferrocino I, Villani F.	Food Microbiol	10.1016/j.fm.2008.09.005	2009
Genetics	Identification of a Novel Yersinia enterocolitica Strain from Bats in Association with a Bat Die-Off That Occurred in Georgia (Caucasus).	Imnadze T, Natradze I, Zhgenti E, Malania L, Abazashvili N, Sidamonidze K, Khmaladze E, Zakalashvili M, Imnadze P, Arner RJ, Motin V, Kosoy M.	Microorganisms	10.3390/microorganisms8071000	2020
	Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios.	Poirier S, Coeuret G, Champomier-Verges MC, Desmonts MH, Werner D, Feurer C, Fremaux B, Guillou S, Luong NM, Rue O, Loux V, Zagorec M, Chaillou S, ANR Redlosses Consortium Group.	Front Microbiol	10.3389/fmicb.2023.1286661	2023
Phylogeny	Diversity of auxin-producing bacteria associated to Pseudomonas savastanoi -induced olive knots.	Ouzari H, Khsairi A, Raddadi N, Jaoua L, Hassen A, Zarrouk M, Daffonchio D, Boudabous A.	J Basic Microbiol	10.1002/jobm.200800036	2008
	Molecular characterization of a cryptic plasmid from the psychrotrophic antarctic bacterium Pseudoalteromonas sp. 643A.	Cieslinski H, Werbowy K, Kur J, Turkiewicz M.	Plasmid	10.1016/j.plasmid.2008.06.002	2008
	Enterobacteriaceae and Salmonella contamination of wild boar (Sus scrofa) carcasses: comparison between different sampling strategies.	Bonardi S, Tansini C, Cacchioli A, Soliani L, Poli L, Lamperti L, Corradi M, Gilioli S.	Eur J Wildl Res	10.1007/s10344-021-01531-0	2021
	Structures of the biological repeating units in the O-chain polysaccharides of Hafnia alvei strains having a typical lipopolysaccharide outer core region.	Katzenellenbogen E, Kocharova NA, Zatonsky GV, Shashkov AS, Bogulska M, Knirel YA.	FEMS Immunol Med Microbiol	10.1016/j.femsim.2005.05.003	2005
	Klebsiella pneumoniae Carbapenemase Producers in South Korea between 2013 and 2015.	Yoon EJ, Kim JO, Kim D, Lee H, Yang JW, Lee KJ, Jeong SH.	Front Microbiol	10.3389/fmicb.2018.00056	2018
	Burden of extensively drug-resistant and pandrug-resistant Gram-negative bacteria at a tertiary-care centre.	Bhatt P, Tandel K, Shete V, Rathi KR.	New Microbes New Infect	10.1016/j.nmni.2015.01.003	2015
	First report on clinical aspects, blood profiles, bacterial isolation, antimicrobial susceptibility, and histopathology in canine pyometra in Thailand.	Lansubsakul N, Sirinarumitr K, Sirinarumitr T, Imsilp K, Wattananit P, Supanrung S, Limmanont C.	Vet World	10.14202/vetworld.2022.1804-1813	2022
	Overview of a surface-ripened cheese community functioning by meta-omics analyses.	Dugat-Bony E, Straub C, Teissandier A, Onesime D, Loux V, Monnet C, Irlinger F, Landaud S, Leclercq-Perlat MN, Bento P, Fraud S, Gibrat JF, Aubert J, Fer F, Guedon E, Pons N, Kennedy S, Beckerich JM, Swennen D, Bonnarme P.	PLoS One	10.1371/journal.pone.0124360	2015
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Phylogeny	[Intestinal enterobacteria of the hibernating Apis mellifera mellifera L. bees].	Liapunov IaE, Kuziaev RZ, Khismatullin RG, Bezgodova OA.	Mikrobiologiia	10.1134/s0026261708030181	2008
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Enzymology	Hafnia alvei infection in pullets in Italy.	Casagrande Proietti P, Passamonti F, Pia Franciosini M, Asdrubali G.	Avian Pathol	10.1080/0307945042000195830	2004
	A Scoping Review of the Global Distribution of Causes and Syndromes Associated with Mid- to Late-Term Pregnancy Loss in Horses between 1960 and 2020.	Macleay CM, Carrick J, Shearer P, Begg A, Stewart M, Heller J, Chicken C, Brookes VJ.	Vet Sci	10.3390/vetsci9040186	2022
	Occurrence of proteolytic activity and N-acyl-homoserine lactone signals in the spoilage of aerobically chill-stored proteinaceous raw foods.	Liu M, Gray JM, Griffiths MW.	J Food Prot	10.4315/0362-028x-69.11.2729	2006
	Plasmid-mediated AmpC: prevalence in community-acquired isolates in Amsterdam, the Netherlands, and risk factors for carriage.	Reuland EA, Halaby T, Hays JP, de Jongh DM, Snetselaar HD, van Keulen M, Elders PJ, Savelkoul PH, Vandenbroucke-Grauls CM, Al Naiemi N.	PLoS One	10.1371/journal.pone.0113033	2015
Enzymology	Occurrence of Biogenic Amines Producers in the Wastewater of the Dairy Industry.	Jancova P, Pachlova V, Cechova E, Cedidlova K, Sera J, Pistekova H, Bunka F, Bunkova L.	Molecules	10.3390/molecules25215143	2020
	Microbial Decontamination of Beef Carcass Surfaces by Lactic Acid, Acetic Acid, and Trisodium Phosphate Sprays.	Sallam KI, Abd-Elghany SM, Hussein MA, Imre K, Morar A, Morshdy AE, Sayed-Ahmed MZ.	Biomed Res Int	10.1155/2020/2324358	2020
Enzymology	Late-onset neonatal sepsis due to Hafnia alvei.	Casanova-Roman M, Sanchez-Porto A, Casanova-Bellido M.	Scand J Infect Dis	10.1080/00365540310017375	2004
Genetics	Taxonomic Identification of Different Species of the Genus Aeromonas by Whole-Genome Sequencing and Use of Their Species-Specific beta-Lactamases as Phylogenetic Markers.	Bertran X, Rubio M, Gomez L, Llovet T, Munoz C, Navarro F, Miro E.	Antibiotics (Basel)	10.3390/antibiotics10040354	2021
	Comparison of PCR-based molecular markers for the characterization of Proteus mirabilis clinical isolates.	Michelim L, Muller G, Zacaria J, Delamare AP, Costa SO, Echeverrigaray S.	Braz J Infect Dis	10.1590/s1413-86702008000500014	2008
Metabolism	Lactoferrin-monophosphoryl lipid A complex enhances immunity of mice to Plesiomonas shigelloides CNCTC 138/92.	Chodaczek G, Zimecki M, Lukasiewicz J, Lugowski C.	Acta Biochim Pol	10.18388/abp.2008_3153	2008
Enzymology	Phenotypic characterization of human pathogenic bacteria in fish from the coastal waters of South West Cameroon: public health implications.	Akoachere JF, Bughe RN, Oben BO, Ndip LM, Ndip RN.	Rev Environ Health	10.1515/reveh.2009.24.2.147	2009
Phylogeny	Clinical and laboratory diagnostic characteristics and cytotoxigenic potential of Hafnia alvei and Hafnia paralvei strains.	Abbott SL, Moler S, Green N, Tran RK, Wainwright K, Janda JM.	J Clin Microbiol	10.1128/jcm.00866-11	2011
	The O-acetylation patterns in the O-antigens of Hafnia alvei strains PCM 1200 and 1203, serologically closely related to PCM 1205.	Dag S, Niedziela T, Dzieciatkowska M, Lukasiewicz J, Jachymek W, Lugowski C, Kenne L.	Carbohydr Res	10.1016/j.carres.2004.09.003	2004
Phylogeny	Genetic and ecological structure of Hafnia alvei in Australia.	Okada S, Gordon DM.	Syst Appl Microbiol	10.1078/072320203770865891	2003
	Synthesis of novel 2-methyl-3-furyl sulfide flavor derivatives as efficient preservatives.	Xie J, Liao B, Zhu H, Yu Y, Tang RY.	RSC Adv	10.1039/d1ra04207f	2021
Enzymology	Evaluation of the Rapidec Carba NP Test for Detection of Carbapenemases in Enterobacteriaceae.	Hombach M, von Gunten B, Castelberg C, Bloemberg GV.	J Clin Microbiol	10.1128/jcm.02327-15	2015
	Quorum sensing system and influence on food spoilage in Pseudomonas fluorescens from turbot.	Li T, Yang B, Li X, Li J, Zhao G, Kan J.	J Food Sci Technol	10.1007/s13197-018-3222-y	2018
	FoxR is an AraC-like transcriptional regulator of ferrioxamine uptake in Salmonella enterica.	Saldana-Ahuactzi Z, Knodler LA.	Mol Microbiol	10.1111/mmi.14970	2022
	Plasmid-mediated colistin resistance among human clinical Enterobacterales isolates: national surveillance in the Czech Republic.	Zelendova M, Papagiannitsis CC, Sismova P, Medvecky M, Pomorska K, Palkovicova J, Nesporova K, Jakubu V, Jamborova I, Zemlickova H, Dolejska M, Working Group for Monitoring of Antibiotic Resistance.	Front Microbiol	10.3389/fmicb.2023.1147846	2023
Pathogenicity	Analysis of bacteriological pollution and the detection of antibiotic resistance genes of prevailing bacteria emanating from pig farm seepage.	Matjuda DS, Aiyegoro OA.	Microbiologyopen	10.1002/mbo3.737	2019
	Phylogenetic Analysis and Antimicrobial Profiles of Cultured Emerging Opportunistic Pathogens (Phyla Actinobacteria and Proteobacteria) Identified in Hot Springs.	Jardine JL, Abia ALK, Mavumengwana V, Ubomba-Jaswa E.	Int J Environ Res Public Health	10.3390/ijerph14091070	2017
	Normalization of leaky gut in chronic fatigue syndrome (CFS) is accompanied by a clinical improvement: effects of age, duration of illness and the translocation of LPS from gram-negative bacteria.	Maes M, Leunis JC.	Neuro Endocrinol Lett		2008
Metabolism	Gut bacterial ClpB-like gene function is associated with decreased body weight and a characteristic microbiota profile.	Arnoriaga-Rodriguez M, Mayneris-Perxachs J, Burokas A, Perez-Brocal V, Moya A, Portero-Otin M, Ricart W, Maldonado R, Fernandez-Real JM.	Microbiome	10.1186/s40168-020-00837-6	2020
Metabolism	Effects of Bacterial CLPB Protein Fragments on Food Intake and PYY Secretion.	Dominique M, Lucas N, Legrand R, Boulete IM, Bole-Feysot C, Deroissart C, Leon F, Nobis S, do Rego JC, Lambert G, Dechelotte P.	Nutrients	10.3390/nu13072223	2021
Phylogeny	Natural antimicrobial susceptibility patterns and biochemical identification of Escherichia albertii and Hafnia alvei strains.	Stock I, Rahman M, Sherwood KJ, Wiedemann B.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2004.10.008	2005
Phylogeny	Polyphasic study of microbial communities of two Spanish farmhouse goats' milk cheeses from Sierra de Aracena.	Martin-Platero AM, Maqueda M, Valdivia E, Purswani J, Martinez-Bueno M.	Food Microbiol	10.1016/j.fm.2008.12.004	2009
	Evaluation of Two Methods for the Detection of Third Generation Cephalosporins Resistant Enterobacterales Directly From Positive Blood Cultures.	Durand C, Boudet A, Lavigne JP, Pantel A.	Front Cell Infect Microbiol	10.3389/fcimb.2020.00491	2020
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	Twenty Years of Passive Disease Surveillance of Roe Deer (Capreolus capreolus) in Slovenia.	Zele Vengust D, Kuhar U, Jerina K, Vengust G.	Animals (Basel)	10.3390/ani11020407	2021
	Three Dimensional Vero Cell-Platform for Rapid and Sensitive Screening of Shiga-Toxin Producing Escherichia coli.	To CZ, Bhunia AK.	Front Microbiol	10.3389/fmicb.2019.00949	2019
Enzymology	Characterization of the brewery spoilage bacterium Obesumbacterium proteus by automated ribotyping and development of PCR methods for its biotype 1.	Koivula TT, Juvonen R, Haikara A, Suihko ML.	J Appl Microbiol	10.1111/j.1365-2672.2005.02794.x	2006
	Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on Cantal-Type Cheese Microbiota.	Fretin M, Gerard A, Ferlay A, Martin B, Buchin S, Theil S, Rifa E, Loux V, Rue O, Chassard C, Delbes C.	Microorganisms	10.3390/microorganisms10020334	2022
	Molecular characterization of non-biogenic amines producing Lactobacillus plantarum GP11 isolated from traditional pickles using HRESI-MS analysis.	Priyanka V, Ramesha A, Gayathri D, Vasudha M.	J Food Sci Technol	10.1007/s13197-020-04732-8	2021
	Microbiological and pathogenic contaminants of seafood in Greece	Papadopoulou C, Economou E, Zakas G, Salamoura C, Dontorou C, Apostolou J.	J Food Qual	10.1111/j.1745-4557.2007.00104.x	2007
	Characterization of Antibiotic Resistant Coliform Bacteria and Resistance Genes Isolated from Samples of Smoothie Drinks and Raw Milk.	Krahulcova M, Cverenkarova K, Olejnikova P, Micajova B, Korenekova J, Birosova L.	Foods	10.3390/foods11091324	2022
	[Hafnia alvei bacteremia with liver and muscle abscess: a case report].	Pulcini C, Roth S, Bernard E, Vandenbos F, Bernard JL, Dellamonica P.	Presse Med		2003
Phylogeny	Mussel Mass Mortality and the Microbiome: Evidence for Shifts in the Bacterial Microbiome of a Declining Freshwater Bivalve.	Richard JC, Campbell LJ, Leis EM, Agbalog RE, Dunn CD, Waller DL, Knowles S, Putnam JG, Goldberg TL.	Microorganisms	10.3390/microorganisms9091976	2021
Metabolism	Humoral Immunity Profiling of Subjects with Myalgic Encephalomyelitis Using a Random Peptide Microarray Differentiates Cases from Controls with High Specificity and Sensitivity.	Singh S, Stafford P, Schlauch KA, Tillett RR, Gollery M, Johnston SA, Khaiboullina SF, De Meirleir KL, Rawat S, Mijatovic T, Subramanian K, Palotas A, Lombardi VC.	Mol Neurobiol	10.1007/s12035-016-0334-0	2018
	Gut Microbiota Approach-A New Strategy to Treat Parkinson's Disease.	Liu J, Xu F, Nie Z, Shao L.	Front Cell Infect Microbiol	10.3389/fcimb.2020.570658	2020
	Single-Sampling Strategy vs. Multi-Sampling Strategy for Blood Cultures in Sepsis: A Prospective Non-inferiority Study.	Yu D, Larsson A, Parke A, Unge C, Henning C, Sunden-Cullberg J, Somell A, Stralin K, Ozenci V.	Front Microbiol	10.3389/fmicb.2020.01639	2020
Enzymology	Admission prevalence of colonization with third-generation cephalosporin-resistant Enterobacteriaceae and subsequent infection rates in a German university hospital.	Boldt AC, Schwab F, Rohde AM, Kola A, Bui MT, Martin N, Kipnis M, Schroder C, Leistner R, Wiese-Posselt M, Zweigner J, Gastmeier P, Denkel LA.	PLoS One	10.1371/journal.pone.0201548	2018
	Prevalence of Common Nosocomial Infections and Evaluation of Antibiotic Resistance Patterns in Patients with Secondary Infections in Hamadan, Iran.	Nouri F, Karami P, Zarei O, Kosari F, Alikhani MY, Zandkarimi E, Rezazadeh Zarandi E, Taheri M.	Infect Drug Resist	10.2147/idr.s259252	2020
Genetics	Integrated molecular approaches for fermented food microbiome research.	Walsh AM, Leech J, Huttenhower C, Delhomme-Nguyen H, Crispie F, Chervaux C, Cotter PD.	FEMS Microbiol Rev	10.1093/femsre/fuad001	2023
Pathogenicity	Low antimicrobial resistance in general practice patients in Rotterdam, the city with the largest proportion of immigrants in the Netherlands.	Honsbeek M, Tjon-A-Tsien A, Stobberingh E, de Steenwinkel J, Melles DC, Lous J, Richardus JH, Voeten H.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-019-03804-8	2020
Phylogeny	Biodiversity of the microbial community in a Spanish farmhouse cheese as revealed by culture-dependent and culture-independent methods.	Abriouel H, Martin-Platero A, Maqueda M, Valdivia E, Martinez-Bueno M.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2008.07.004	2008
Biotechnology	Method for reliable isolation of Lactobacillus sakei strains originating from Tunisian seafood and meat products.	Najjari A, Ouzari H, Boudabous A, Zagorec M.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2007.11.045	2008
	Utility of filter paper for preserving insects, bacteria, and host reservoir DNA for molecular testing.	Karimian F, Sedaghat M, Oshaghi M, Mohtarami F, Dehkordi AS, Koosha M, Akbari S, Hashemi-Aghdam S.	Iran J Arthropod Borne Dis		2011
Metabolism	The gut-brain barrier in major depression: intestinal mucosal dysfunction with an increased translocation of LPS from gram negative enterobacteria (leaky gut) plays a role in the inflammatory pathophysiology of depression.	Maes M, Kubera M, Leunis JC.	Neuro Endocrinol Lett		2008
	Formation of cadaverine, histamine, putrescine and tyramine by bacteria isolated from meat, fermented sausages and cheeses	Pircher A, Bauer F, Paulsen P.	Eur Food Res Technol	10.1007/s00217-006-0530-7	2007
	Bacterial Biofilm Thickness and Fungal Inhibitory Bacterial Richness Both Prevent Establishment of the Amphibian Fungal Pathogen Batrachochytrium dendrobatidis.	Chen MY, Alexiev A, McKenzie VJ.	Appl Environ Microbiol	10.1128/aem.01604-21	2022
	Nucleotide sequence and expression of the ncr nickel and cobalt resistance in Hafnia alvei 5-5.	Park JE, Schlegel HG, Rhie HG, Lee HS.	Int Microbiol		2004
	Necrotizing fasciitis following endoscopic harvesting of the greater saphenous vein for coronary artery bypass graft.	Liliav B, Yakoub D, Kasabian A.	JSLS	10.4293/108680811x13022985131453	2011
	Enhanced thermal and alkaline stability of L-lysine decarboxylase CadA by combining directed evolution and computation-guided virtual screening.	Xi Y, Ye L, Yu H.	Bioresour Bioprocess	10.1186/s40643-022-00510-w	2022
	Diagnostic studies of abortion in Danish cattle 2015-2017.	Wolf-Jackel GA, Hansen MS, Larsen G, Holm E, Agerholm JS, Jensen TK.	Acta Vet Scand	10.1186/s13028-019-0499-4	2020
Genetics	Pan-Genome Reverse Vaccinology Approach for the Design of Multi-Epitope Vaccine Construct against Escherichia albertii.	Jalal K, Khan K, Ahmad D, Hayat A, Basharat Z, Abbas MN, Alghamdi S, Almehmadi M, Sahibzada MUK.	Int J Mol Sci	10.3390/ijms222312814	2021
	Bacterial Communities within Digestive Tracts of Ground Beetles (Coleoptera: Carabidae)	Lundgren JG, Lehman RM, Chee-sanford J.	Ann Entomol Soc Am	10.1603/0013-8746(2007)100[275:bcwdto]2.0.co;2	2007
	Effect of organic acids on the formation of biogenic amines in fermented anchovy sauce comprising raw anchovy materials with different levels of freshness.	Shim K, Mok JS, Jeong Y, Park K, Jang MS.	J Food Sci Technol	10.1007/s13197-021-05065-w	2022
Metabolism	Degradation of phytate by the 6-phytase from Hafnia alvei: a combined structural and solution study.	Ariza A, Moroz OV, Blagova EV, Turkenburg JP, Waterman J, Roberts SM, Vind J, Sjoholm C, Lassen SF, De Maria L, Glitsoe V, Skov LK, Wilson KS.	PLoS One	10.1371/journal.pone.0065062	2013
	Technological and Sensory Quality and Microbiological Safety of RIR Chicken Breast Meat Marinated with Fermented Milk Products.	Sokolowicz Z, Augustynska-Prejsnar A, Krawczyk J, Kacaniova M, Kluz M, Hanus P, Topczewska J.	Animals (Basel)	10.3390/ani11113282	2021
Pathogenicity	Colonization sites in carriers of ESBL-producing Gram-negative bacteria.	van Prehn J, Kaiser AM, van der Werff SD, van Mansfeld R, Vandenbroucke-Grauls CMJE.	Antimicrob Resist Infect Control	10.1186/s13756-018-0344-y	2018
	Improved detection of Escherichia coli and coliform bacteria by multiplex PCR.	Molina F, Lopez-Acedo E, Tabla R, Roa I, Gomez A, Rebollo JE.	BMC Biotechnol	10.1186/s12896-015-0168-2	2015
	Clinical Relevance of Antibiotic Susceptibility Profiles for Screening Gram-negative Microorganisms Resistant to Beta-Lactam Antibiotics.	Montiel-Riquelme F, Calatrava-Hernandez E, Gutierrez-Soto M, Exposito-Ruiz M, Navarro-Mari JM, Gutierrez-Fernandez J.	Microorganisms	10.3390/microorganisms8101555	2020
Enzymology	Genetic engineering of complex feed enzymes into barley seed for direct utilization in animal feedstuff.	Peng RH, Zhang WH, Wang Y, Deng YD, Wang B, Gao JJ, Li ZJ, Wang LJ, Fu XY, Xu J, Han HJ, Tian YS, Yao QH.	Plant Biotechnol J	10.1111/pbi.13972	2023
	Antibiotic-Resistant Extended Spectrum ß-Lactamase- and Plasmid-Mediated AmpC-Producing Enterobacteriaceae Isolated from Retail Food Products and the Pearl River in Guangzhou, China.	Ye Q, Wu Q, Zhang S, Zhang J, Yang G, Wang H, Huang J, Chen M, Xue L, Wang J.	Front Microbiol	10.3389/fmicb.2017.00096	2017
	[Genetic markers of pathogenicity of conditionally pathogenic enterobacteria isolated from children with diarrheal diseases].	Zherebtsova NIu, Baimiev AKh, Valishin DA, Mavziutov AR.	Zh Mikrobiol Epidemiol Immunobiol		2007
	Structural and functional insights into the Pseudomonas aeruginosa glycosyltransferase WaaG and the implications for lipopolysaccharide biosynthesis.	Scaletti ER, Pettersson P, Patrick J, Shilling PJ, Westergren RG, Daley DO, Maler L, Widmalm G, Stenmark P.	J Biol Chem	10.1016/j.jbc.2023.105256	2023
	Inhibition of the early stage of Salmonella enterica serovar Enteritidis biofilm development on stainless steel by cell-free supernatant of a Hafnia alvei culture.	Chorianopoulos NG, Giaouris ED, Kourkoutas Y, Nychas GJ.	Appl Environ Microbiol	10.1128/aem.02093-09	2010
	Bacterial Community and Anti-Cerebrovascular Disease-Related Bacillus Species Isolated from Traditionally Made Kochujang from Different Provinces of Korea.	Ha G, Yang HJ, Ryu MS, Jeong SJ, Jeong DY, Park S.	Microorganisms	10.3390/microorganisms9112238	2021
	Plasma-Activated Water (PAW) as a Disinfection Technology for Bacterial Inactivation with a Focus on Fruit and Vegetables.	Soni A, Choi J, Brightwell G.	Foods	10.3390/foods10010166	2021
Pathogenicity	Conjugative plasmid mediated inducible nickel resistance in Hafnia alvei 5-5.	Park JE, Young KE, Schlegel HG, Rhie HG, Lee HS.	Int Microbiol	10.1007/s10123-003-0101-8	2003
Pathogenicity	Clinical Validation of SensiTest Colistin, a Broth Microdilution-Based Method To Evaluate Colistin MICs.	Carretto E, Brovarone F, Russello G, Nardini P, El-Bouseary MM, Aboklaish AF, Walsh TR, Tyrrell JM.	J Clin Microbiol	10.1128/jcm.01523-17	2018
	Antilisterial activity of raw sheep milk from two native Epirus breeds: Culture-dependent identification, bacteriocin gene detection and primary safety evaluation of the antagonistic LAB biota.	Sioziou E, Kakouri A, Bosnea L, Samelis J.	Curr Res Microb Sci	10.1016/j.crmicr.2023.100209	2024
	Microbial communities of a variety of 75 homemade fermented vegetables.	Thierry A, Madec MN, Chuat V, Bage AS, Picard O, Grondin C, Rue O, Mariadassou M, Marche L, Valence F.	Front Microbiol	10.3389/fmicb.2023.1323424	2023
Enzymology	Contamination of milk by enterococci and coliforms from bovine faeces.	Kagkli DM, Vancanneyt M, Vandamme P, Hill C, Cogan TM.	J Appl Microbiol	10.1111/j.1365-2672.2007.03338.x	2007
	[Clinical and microbiological features of acute enteric mixed infection caused by Hafnia alvei and rotavirus].	Gracheva NM, Leont'eva NI, Bondarenko VM, Fialkina SV, Konovalova GN, Partin OS, Shcherbakov IT, Solov'eva AI, Blokhina TA.	Zh Mikrobiol Epidemiol Immunobiol		2003
	Metataxonomic Identification of Microorganisms during the Coffee Fermentation Process in Colombian Farms (Cesar Department).	Gongora CE, Holguin-Sterling L, Pedraza-Claros B, Perez-Salinas R, Ortiz A, Navarro-Escalante L.	Foods	10.3390/foods13060839	2024
	Bacteriology and Antimicrobial Resistance in Vanuatu: January 2017 to December 2019.	Foxlee ND, Townell N, Tosul MAL, McIver L, Lau CL.	Antibiotics (Basel)	10.3390/antibiotics9040151	2020
	Population-based laboratory surveillance of Hafnia alvei isolates in a large Canadian health region.	Laupland KB, Church DL, Ross T, Pitout JD.	Ann Clin Microbiol Antimicrob	10.1186/1476-0711-5-12	2006
	Risk Factors for Positive Follow-Up Blood Cultures in Gram-Negative Bacilli Bacteremia: Implications for Selecting Who Needs Follow-Up Blood Cultures.	Mitaka H, Gomez T, Lee YI, Perlman DC.	Open Forum Infect Dis	10.1093/ofid/ofaa110	2020
	Epidemiology of Enterotoxigenic Escherichia coli infection in Minnesota, 2016-2017.	Buuck S, Smith K, Fowler RC, Cebelinski E, Lappi V, Boxrud D, Medus C.	Epidemiol Infect	10.1017/s0950268820001934	2020
Pathogenicity	Antibiotic resistance profiles in cultivable microbiota isolated from some romanian natural fishery lakes included in Natura 2000 network.	Lazar V, Gheorghe I, Curutiu C, Savin I, Marinescu F, Cristea VC, Dobre D, Popa GL, Chifiriuc MC, Popa MI.	BMC Vet Res	10.1186/s12917-021-02770-8	2021
Enzymology	Clinical relevance and impact of Corynebacterium isolation in lower respiratory tract of critically ill patients requiring mechanical ventilation.	Clariot S, Constant O, Lepeule R, Fihman V, Razazi K, Cook F, Attias A, Merle JC, Hemery F, Levesque E, Decousser JW, Langeron O, Mongardon N.	Infection	10.1007/s15010-020-01411-w	2020
	The Impact of Different Factors on the Quality and Volatile Organic Compounds Profile in "Bryndza" Cheese.	Stefanikova J, Duckova V, Miskeje M, Kacaniova M, Canigova M.	Foods	10.3390/foods9091195	2020
	Increased serum IgA and IgM against LPS of enterobacteria in chronic fatigue syndrome (CFS): indication for the involvement of gram-negative enterobacteria in the etiology of CFS and for the presence of an increased gut-intestinal permeability.	Maes M, Mihaylova I, Leunis JC.	J Affect Disord	10.1016/j.jad.2006.08.021	2007
	Rapid Detection of Extended-Spectrum beta-Lactamases (ESBL) and AmpC beta-Lactamases in Enterobacterales: Development of a Screening Panel Using the MALDI-TOF MS-Based Direct-on-Target Microdroplet Growth Assay.	Correa-Martinez CL, Idelevich EA, Sparbier K, Kostrzewa M, Becker K.	Front Microbiol	10.3389/fmicb.2019.00013	2019
Enzymology	Multidrug-Resistant Bacteria Isolated from Surface Water in Bassaseachic Falls National Park, Mexico.	Delgado-Gardea MC, Tamez-Guerra P, Gomez-Flores R, Zavala-Diaz de la Serna FJ, Eroza-de la Vega G, Nevarez-Moorillon GV, Perez-Recoder MC, Sanchez-Ramirez B, Gonzalez-Horta Mdel C, Infante-Ramirez R.	Int J Environ Res Public Health	10.3390/ijerph13060597	2016
	Microbiological characteristics of "androlla", a Spanish traditional pork sausage	Garcia Fontan MC, Lorenzo JM, Parada A, Franco I, Carballo J.	Food Microbiol		2007
Genetics	First report of coexistence of blaKPC-2 and blaNDM-1 in carbapenem-resistant clinical isolates of Klebsiella aerogenes in Brazil.	Rodrigues SH, Nunes GD, Soares GG, Ferreira RL, Damas MSF, Laprega PM, Shilling RE, Campos LC, da Costa AS, Malavazi I, da Cunha AF, Pranchevicius MDS.	Front Microbiol	10.3389/fmicb.2024.1352851	2024
	Screening of microbial communities associated with endive lettuce during postharvest processing on industrial scale.	Frohling A, Rademacher A, Rumpold B, Klocke M, Schluter O.	Heliyon	10.1016/j.heliyon.2018.e00671	2018
	Microbial Antagonism in Food-Enrichment Culture: Inhibition of Shiga Toxin-Producing Escherichia coli and Shigella Species.	McMahon TC, Kingombe CB, Mathews A, Seyer K, Wong A, Blais BW, Carrillo CD.	Front Microbiol	10.3389/fmicb.2022.880043	2022
Enzymology	Rapid Detection of Escherichia coli O157 and Shiga Toxins by Lateral Flow Immunoassays.	Wang J, Katani R, Li L, Hegde N, Roberts EL, Kapur V, DebRoy C.	Toxins (Basel)	10.3390/toxins8040092	2016
Enzymology	The eaeA gene is not found in Hafnia alvei from patients with diarrhea in Aragón, Spain.	Seral C, Castillo FJ, Llorente MT, Varea M, Clavel A, Rubio MC, Gomez-Lus R.	Int Microbiol	10.1007/s101230100017	2001
	The structure of the O-chain of the lipopolysaccharide of a prototypal diarrheagenic strain of Hafnia alvei that has characteristics of a new species under the genus Escherichia.	Eserstam R, Rajaguru TP, Jansson PE, Weintraub A, Albert MJ.	Eur J Biochem	10.1046/j.1432-1033.2002.03009.x	2002
Pathogenicity	Inactivation Efficacies and Mechanisms of Gas Plasma and Plasma-Activated Water against Aspergillus flavus Spores and Biofilms: a Comparative Study.	Los A, Ziuzina D, Boehm D, Cullen PJ, Bourke P.	Appl Environ Microbiol	10.1128/aem.02619-19	2020
	Biosensing the Histamine Producing Potential of Bacteria in Tuna.	Trevisani M, Cecchini M, Fedrizzi G, Corradini A, Mancusi R, Tothill IE.	Front Microbiol	10.3389/fmicb.2019.01844	2019
	Impacts of Wet Market Modernization Levels and Hygiene Practices on the Microbiome and Microbial Safety of Wooden Cutting Boards in Hong Kong.	Ngan WY, Rao S, Chan LC, Sekoai PT, Pu Y, Yao Y, Fung AHY, Habimana O.	Microorganisms	10.3390/microorganisms8121941	2020
	Combined Thermomechanical-Biological Treatment for Corn By-Product Valorization into Added-Value Food (Feed) Material.	Bartkiene E, Starkute V, Zokaityte E, Klupsaite D, Bartkevics V, Zokaityte G, Cernauskas D, Ruzauskas M, Ruibys R, Viksna A.	Plants (Basel)	10.3390/plants11223080	2022
Enzymology	Delayed-onset postoperative endophthalmitis caused by Hafnia alvei.	Ruiz-Moreno JM, Alio JL, de la Hoz F.	Eur J Ophthalmol	10.1177/112067210101100217	2001
	Substantial diagnostic impact of blood culture independent molecular methods in bloodstream infections: Superior performance of PCR/ESI-MS.	Makristathis A, Harrison N, Ratzinger F, Kussmann M, Selitsch B, Forstner C, Hirschl AM, Burgmann H.	Sci Rep	10.1038/s41598-018-34298-7	2018
Pathogenicity	Prevalence of mcr-type genes among colistin-resistant Enterobacteriaceae collected in 2014-2016 as part of the INFORM global surveillance program.	Wise MG, Estabrook MA, Sahm DF, Stone GG, Kazmierczak KM.	PLoS One	10.1371/journal.pone.0195281	2018
Enzymology	Evaluation of increased incubation temperature and cefixime-tellurite treatment for the isolation of Escherichia coli O157:H7 from minced beef.	Dogan HB, Kuleasan H, Cakir I, Halkman AK.	Int J Food Microbiol	10.1016/s0168-1605(03)00045-x	2003
	Etiologic agents of cervicovaginitis in Turkish women.	Ozturk CE, Ozdemir I, Yavuz T, Kaya D, Behcet M.	Saudi Med J		2006
	Gas formation in ground beef chubs due to Hafnia alvei is reduced by multiple applications of antimicrobial interventions to artificially inoculated beef trim stock.	Kang DH, Arthur TM, Siragusa GR.	J Food Prot	10.4315/0362-028x-65.10.1651	2002
Genetics	High-Resolution Metagenomics of Human Gut Microbiota Generated by Nanopore and Illumina Hybrid Metagenome Assembly.	Ye L, Dong N, Xiong W, Li J, Li R, Heng H, Chan EWC, Chen S.	Front Microbiol	10.3389/fmicb.2022.801587	2022
Pathogenicity	A complex of lactoferrin with monophosphoryl lipid A is an efficient adjuvant of the humoral and cellular immune response in mice.	Chodaczek G, Zimecki M, Lukasiewicz J, Lugowski C.	Med Microbiol Immunol	10.1007/s00430-006-0020-3	2006
Pathogenicity	Carbapenem-resistant Gram-negative pathogens in a German university medical center: Prevalence, clinical implications and the role of novel beta-lactam/beta-lactamase inhibitor combinations.	Katchanov J, Asar L, Klupp EM, Both A, Rothe C, Konig C, Rohde H, Kluge S, Maurer FP.	PLoS One	10.1371/journal.pone.0195757	2018
	Extraintestinal infection due to Hafnia alvei.	Ramos A, Damaso D.	Eur J Clin Microbiol Infect Dis	10.1007/s100960000356	2000
	Spectroscopic differentiation and quantification of microorganisms in apple juice	Yu CX, Irudayaraj J, Debroy C, Schmilovtich Z, Mizrach A.	J Food Sci		2004
Enzymology	Misidentification of a mucoid strain of Salmonella enterica serotype choleraesuis as Hafnia alvei by the Vitek GNI+ card system.	Wang TK, Yam WC, Yuen KY, Wong SS.	J Clin Microbiol	10.1128/jcm.01488-06	2006
Enzymology	Isolation of Vibrio cholerae from neonates admitted to an urban diarrhoeal diseases hospital in Bangladesh.	Khan AM, Faruque AS, Hossain MS.	Ann Trop Paediatr	10.1179/146532805x58102	2005
	Delivery mechanism can enhance probiotic activity against honey bee pathogens.	Daisley BA, Pitek AP, Torres C, Lowery R, Adair BA, Al KF, Nino B, Burton JP, Allen-Vercoe E, Thompson GJ, Reid G, Nino E.	ISME J	10.1038/s41396-023-01422-z	2023
Genetics	Complete Genome Analysis Reveals the Quorum Sensing-Related Spoilage Potential of Pseudomonas fluorescens PF08, a Specific Spoilage Organism of Turbot (Scophthalmus maximus).	Wang D, Cui F, Ren L, Tan X, Lv X, Li Q, Li J, Li T.	Front Microbiol	10.3389/fmicb.2022.856802	2022
	Intestinal Dopamine Receptor D2 is Required for Neuroprotection Against 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine-induced Dopaminergic Neurodegeneration.	Peng H, Yu S, Zhang Y, Yin Y, Zhou J.	Neurosci Bull	10.1007/s12264-022-00848-3	2022
	Prevalence of uropathogens in diabetic patients and their corresponding resistance pattern: results of a survey conducted at diagnostic centers in dhaka, bangladesh.	Shill MC, Huda NH, Moain FB, Karmakar UK.	Oman Med J	10.5001/omj.2010.82	2010
Enzymology	[Beta-lactamases of Gram negative bacteria: never-ending clockwork!].	Philippon A, Arlet G.	Ann Biol Clin (Paris)		2006
Phylogeny	Improved Species-Level Clinical Identification of Enterobacteriaceae through Broad-Range dnaJ PCR and Sequencing.	McLean K, Rosenthal CA, Sengupta D, Owens J, Cookson BT, Hoffman NG, Salipante SJ.	J Clin Microbiol	10.1128/jcm.00986-19	2019
	Structure of the lipopolysaccharide core region of Hafnia alvei strains 1185 and 1204.	Kubler J, Katzenellenbogen E, Gamian A, Bogulska M, Ejchart A, Romanowska E.	Carbohydr Res	10.1016/s0008-6215(00)00169-5	2000
Pathogenicity	From structure to function - Ligand recognition by myeloid C-type lectin receptors.	Fischer S, Stegmann F, Gnanapragassam VS, Lepenies B.	Comput Struct Biotechnol J	10.1016/j.csbj.2022.10.019	2022
	Salting by Vacuum Brine Impregnation in Nitrite-Free Lonza: Effect on Enterobacteriaceae.	Serio A, Chaves-Lopez C, Rossi C, Pittia P, Rosa MD, Paparella A.	Ital J Food Saf	10.4081/ijfs.2017.6178	2017
	Enteric Pathogens and Coinfections in Foals with and without Diarrhea.	Olivo G, Lucas TM, Borges AS, Silva RO, Lobato FC, Siqueira AK, da Silva Leite D, Brandao PE, Gregori F, de Oliveira-Filho JP, Takai S, Ribeiro MG.	Biomed Res Int	10.1155/2016/1512690	2016
Enzymology	Improved selective and differential medium for isolation of Escherichia coli O157:H7.	Park SH, Ryu S, Kang DH.	J Clin Microbiol	10.1128/jcm.01359-10	2011
	Diagnostic Evasion of Highly-Resistant Microorganisms: A Critical Factor in Nosocomial Outbreaks.	Zhou X, Friedrich AW, Bathoorn E.	Front Microbiol	10.3389/fmicb.2017.02128	2017
	Structural and serological studies on Hafnia alvei O-specific polysaccharide of alpha-D-mannan type isolated from the lipopolysaccharide of strain PCM 1223.	Katzenellenbogen E, Kocharova NA, Zatonsky GV, Kubler-Kielb J, Gamian A, Shashkov AS, Knirel YA, Romanowska E.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2001.tb01574.x	2001
Phylogeny	Class C beta-Lactamases: Molecular Characteristics.	Philippon A, Arlet G, Labia R, Iorga BI.	Clin Microbiol Rev	10.1128/cmr.00150-21	2022
	Characterisation of Hafnia alvei isolates from human clinical extra-intestinal specimens: haemagglutinins, serum resistance and siderophore synthesis.	Podschun R, Fischer A, Ullmann U.	J Med Microbiol	10.1099/0022-1317-50-3-208	2001
	Profile of Bacterial Infections in COVID-19 Patients: Antimicrobial Resistance in the Time of SARS-CoV-2.	Stefanini I, De Renzi G, Foddai E, Cordani E, Mognetti B.	Biology (Basel)	10.3390/biology10090822	2021
	Elucidation of the Natural Function of Sophorolipids Produced by Starmerella bombicola.	De Clercq V, Roelants SLKW, Castelein MG, De Maeseneire SL, Soetaert WK.	J Fungi (Basel)	10.3390/jof7110917	2021
	Impact of Sepsis Classification and Multidrug-Resistance Status on Outcome Among Patients Treated With Appropriate Therapy.	Burnham JP, Lane MA, Kollef MH.	Crit Care Med	10.1097/ccm.0000000000001013	2015
	Quality and Safety of Marinating Breast Muscles of Hens from Organic Farming after the Laying Period with Buttermilk and Whey.	Augustynska-Prejsnar A, Sokolowicz Z, Hanus P, Ormian M, Kacaniova M.	Animals (Basel)	10.3390/ani10122393	2020
Biotechnology	Microbiological characteristics of "androlla", a Spanish traditional pork sausage.	Garcia Fontan MC, Lorenzo JM, Parada A, Franco I, Carballo J.	Food Microbiol	10.1016/j.fm.2006.03.007	2007
	Decreased Ficolin-3-mediated Complement Lectin Pathway Activation and Alternative Pathway Amplification During Bacterial Infections in Patients With Type 2 Diabetes Mellitus.	Barkai LJ, Sipter E, Csuka D, Prohaszka Z, Pilely K, Garred P, Hosszufalusi N.	Front Immunol	10.3389/fimmu.2019.00509	2019
	Identification and study of InV as an inverse autotransporter family representative in Edwardsiella piscicida.	Han Y, Wei L, Xiao J, Zhang Y, Wang Q, Zhou M.	Arch Microbiol	10.1007/s00203-019-01804-y	2020
	Immunochemical aspects of Hafnia alvei O antigens.	Romanowska E.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2000.tb01433.x	2000
	Determination of histamine in milkfish stick implicated in food-borne poisoning.	Lee YC, Kung HF, Wu CH, Hsu HM, Chen HC, Huang TC, Tsai YH.	J Food Drug Anal	10.1016/j.jfda.2015.06.009	2016
	Evaluation of FASTinov Ultrarapid Flow Cytometry Antimicrobial Susceptibility Testing Directly from Positive Blood Cultures.	Silva-Dias A, Perez-Viso B, Martins-Oliveira I, Gomes R, Rodrigues AG, Canton R, Pina-Vaz C.	J Clin Microbiol	10.1128/jcm.00544-21	2021
	Co-Occurrence of Plasmid-Mediated AmpC beta-Lactamase Activity Among Klebsiella pneumoniae and Escherichia Coli.	Zorgani A, Daw H, Sufya N, Bashein A, Elahmer O, Chouchani C.	Open Microbiol J	10.2174/1874285801711010195	2017
Metabolism	Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms.	Flaugnatti N, Isaac S, Lemos Rocha LF, Stutzmann S, Rendueles O, Stoudmann C, Vesel N, Garcia-Garcera M, Buffet A, Sana TG, Rocha EPC, Blokesch M.	Nat Commun	10.1038/s41467-021-26041-0	2021
Genetics	Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory.	Paillet T, Lossouarn J, Figueroa C, Midoux C, Rue O, Petit MA, Dugat-Bony E.	Viruses	10.3390/v14081620	2022
Metabolism	Changes in protein composition and hydrolytic enzyme activity of Escherichia coli and Hafnia alvei grown in human fluids.	Papageorgakopoulou N, Vynios DH, Adamopoulos P, Stravropoulou C, Papapetropoulou M.	Microbiol Res	10.1016/s0944-5013(00)80011-7	2000
	Natural Occurrence of Campylobacter Species, Salmonella Serovars, and other Bacteria in Unabsorbed Yolks of Market-Age Commercial Broilers	Cox NA, Richardson LJ, Buhr RJ, Northcutt JK, Fedorka-Cray PJ, Bailey JS, Fairchild BD, Mauldin JM.	Journal of applied poultry research.	10.1093/japr/15.4.551	2006
	Molecular characteristics of extended-spectrum cephalosporin-resistant Enterobacteriaceae from humans in the community.	van Hoek AH, Schouls L, van Santen MG, Florijn A, de Greeff SC, van Duijkeren E.	PLoS One	10.1371/journal.pone.0129085	2015
Metabolism	Photobacterium phosphoreum caused a histamine fish poisoning incident.	Kanki M, Yoda T, Ishibashi M, Tsukamoto T.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2003.08.019	2004
Pathogenicity	Extended antibiotic treatment in salmon farms select multiresistant gut bacteria with a high prevalence of antibiotic resistance genes.	Higuera-Llanten S, Vasquez-Ponce F, Barrientos-Espinoza B, Mardones FO, Marshall SH, Olivares-Pacheco J.	PLoS One	10.1371/journal.pone.0203641	2018
Pathogenicity	Induction of plasmid-mediated AmpC beta-lactamase DHA-1 by piperacillin/tazobactam and other beta-lactams in Enterobacteriaceae.	Akata K, Muratani T, Yatera K, Naito K, Noguchi S, Yamasaki K, Kawanami T, Kido T, Mukae H.	PLoS One	10.1371/journal.pone.0218589	2019
Metabolism	Detection of gut microbiota and pathogen produced N-acyl homoserine in host circulation and tissues.	Xue J, Chi L, Tu P, Lai Y, Liu CW, Ru H, Lu K.	NPJ Biofilms Microbiomes	10.1038/s41522-021-00224-5	2021
	Different lactic acid bacteria and their combinations regulated the fermentation process of ensiled alfalfa: ensiling characteristics, dynamics of bacterial community and their functional shifts.	Bai J, Ding Z, Ke W, Xu D, Wang M, Huang W, Zhang Y, Liu F, Guo X.	Microb Biotechnol	10.1111/1751-7915.13785	2021
Phylogeny	Characterization of bacterial diversity in pulque, a traditional Mexican alcoholic fermented beverage, as determined by 16S rDNA analysis.	Escalante A, Rodriguez ME, Martinez A, Lopez-Munguia A, Bolivar F, Gosset G.	FEMS Microbiol Lett	10.1016/j.femsle.2004.04.045	2004
	Multiplex PCR scheme for variant plasmid mediated class C beta-lactamase typing.	Chuong LV, Prachayasittikul V, Isarankura Na Ayudhya C, Lawung R.	J Clin Lab Anal	10.1002/jcla.22298	2018
Enzymology	Phenotypic and molecular characterization of plasmid mediated AmpC beta-lactamases among Escherichia coli, Klebsiella spp., and Proteus mirabilis isolated from urinary tract infections in Egyptian hospitals.	Helmy MM, Wasfi R.	Biomed Res Int	10.1155/2014/171548	2014
	Dynamics of bacterial communities during the ripening process of different Croatian cheese types derived from raw ewe's milk cheeses.	Fuka MM, Wallisch S, Engel M, Welzl G, Havranek J, Schloter M.	PLoS One	10.1371/journal.pone.0080734	2013
	Structure and Immunogenicity of the Bordetella pertussis LOS-Derived Oligosaccharides in the Endosomal-Like Pre-Processing Mice Model.	Koj S, Ucieklak K, Lugowski C, Niedziela T.	Vaccines (Basel)	10.3390/vaccines9060645	2021
Pathogenicity	Comparative Evaluation of CHROMagar COL-APSE, MicroScan Walkaway, ComASP Colistin, and Colistin MAC Test in Detecting Colistin-resistant Gram-Negative Bacteria.	Osei Sekyere J, Sephofane AK, Mbelle NM.	Sci Rep	10.1038/s41598-020-63267-2	2020
Metabolism	Modification of Niven's medium for the enumeration of histamine-forming bacteria and discussion of the parameters associated with its use.	Mavromatis P, Quantick PC.	J Food Prot	10.4315/0362-028x-65.3.546	2002
Metabolism	Outbreak of Klebsiella pneumoniae producing transferable AmpC-type beta-lactamase (ACC-1) originating from Hafnia alvei.	Nadjar D, Rouveau M, Verdet C, Donay L, Herrmann J, Lagrange PH, Philippon A, Arlet G.	FEMS Microbiol Lett	10.1111/j.1574-6968.2000.tb09133.x	2000
	Interstrain interactions between bacteria isolated from vacuum-packaged refrigerated beef.	Zhang P, Baranyi J, Tamplin M.	Appl Environ Microbiol	10.1128/aem.03933-14	2015
	Characterization of a Novel Chromosomal Class C beta-Lactamase, YOC-1, and Comparative Genomics Analysis of a Multidrug Resistance Plasmid in Yokenella regensburgei W13.	Zhou D, Sun Z, Lu J, Liu H, Lu W, Lin H, Zhang X, Li Q, Zhou W, Zhu X, Xu H, Lin X, Zhang H, Xu T, Li K, Bao Q.	Front Microbiol	10.3389/fmicb.2020.02021	2020
	Retrospective analysis of post-mortem findings in domestic ducks and geese from non-commercial flocks in Sweden, 2011-2020.	Jansson DS, Otman F, Bagge E, Lindgren Y, Etterlin PE, Eriksson H.	Acta Vet Scand	10.1186/s13028-021-00614-x	2021
Phylogeny	A molecular phylogeny of enteric bacteria and implications for a bacterial species concept.	Wertz JE, Goldstone C, Gordon DM, Riley MA.	J Evol Biol	10.1046/j.1420-9101.2003.00612.x	2003
	Improved sensitivity, accuracy and prediction provided by a high-performance liquid chromatography screen for the isolation of phytase-harbouring organisms from environmental samples.	Rix GD, Todd JD, Neal AL, Brearley CA.	Microb Biotechnol	10.1111/1751-7915.13733	2021
Pathogenicity	Antimicrobial effect of water extract of sumac (Rhus coriaria L.) on the growth of some food borne bacteria including pathogens.	Nasar-Abbas SM, Halkman AK.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2004.04.009	2004
	Dietary Neurotransmitters: A Narrative Review on Current Knowledge.	Briguglio M, Dell'Osso B, Panzica G, Malgaroli A, Banfi G, Zanaboni Dina C, Galentino R, Porta M.	Nutrients	10.3390/nu10050591	2018
Phylogeny	DNA based classification of food associated Enterobacteriaceae previously identified by Biolog GN Microplates.	Olsson C, Ahrne S, Pettersson B, Molin G.	Syst Appl Microbiol	10.1078/072320204322881844	2004
	Fecal Pollution Drives Antibiotic Resistance and Class 1 Integron Abundance in Aquatic Environments of the Bolivian Andes Impacted by Mining and Wastewater.	Agramont J, Gutierrez-Cortez S, Joffre E, Sjoling A, Calderon Toledo C.	Microorganisms	10.3390/microorganisms8081122	2020
	Inhibition of some foodborne bacteria by alcohol extract of sumac (Rhus coriaria L.)	Nasar-Abbas SM, Halkman AK, Al-Haq MI.	Journal of food safety.	10.1111/j.1745-4565.2004.00506.x	2004
	Non-typical lipopolysaccharide core regions of some Hafnia alvei strains: structural and serological studies.	Romanowska E, Katzenellenbogen E, Jachymek W, Niedziela T, Bogulska M, Lugowski C.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.1999.tb01266.x	1999
Metabolism	Volatile compounds produced in cheese by Enterobacteriaceae strains of dairy origin.	Morales P, Feliu I, Fernandez-Garcia E, Nunez M.	J Food Prot	10.4315/0362-028x-67.3.567	2004
Enzymology	Isolation of Potential Phages against Multidrug-Resistant Bacterial Isolates: Promising Agents in the Rivers of Kathmandu, Nepal.	Bhetwal A, Maharjan A, Shakya S, Satyal D, Ghimire S, Khanal PR, Parajuli NP.	Biomed Res Int	10.1155/2017/3723254	2017
	The microbiology of beef from carcass chilling through primal storage to retail steaks.	McSharry S, Koolman L, Whyte P, Bolton D.	Curr Res Food Sci	10.1016/j.crfs.2021.03.002	2021
Pathogenicity	Evaluation of the MicroScan ESBL plus confirmation panel for detection of extended-spectrum beta-lactamases in clinical isolates of oxyimino-cephalosporin-resistant Gram-negative bacteria.	Sturenburg E, Lang M, Horstkotte MA, Laufs R, Mack D.	J Antimicrob Chemother	10.1093/jac/dkh449	2004
Phylogeny	Analysis of bacterial community structure in Saba-Narezushi (Narezushi of Mackerel) by 16S rRNA gene clone library.	Matsui H, Tsuchiya R, Isobe Y, Narita M.	J Food Sci Technol	10.1007/s13197-011-0382-4	2013
Genetics	Shotgun sequencing of honey DNA can describe honey bee derived environmental signatures and the honey bee hologenome complexity.	Bovo S, Utzeri VJ, Ribani A, Cabbri R, Fontanesi L.	Sci Rep	10.1038/s41598-020-66127-1	2020
	Functional characterisation of bioactive peptide derived from terrestrial snail Cryptozona bistrialis and its wound-healing property in normal and diabetic-induced Wistar albino rats.	Ulagesan S, Sankaranarayanan K, Kuppusamy A.	Int Wound J	10.1111/iwj.12872	2018
Transcriptome	Analysis of AmpC beta-lactamase expression and sequence in biochemically atypical ceftazidime-resistant Enterobacteriaceae from paediatric patients.	Avison MB, Underwood S, Okazaki A, Walsh TR, Bennett PM.	J Antimicrob Chemother	10.1093/jac/dkh151	2004
Phylogeny	Pulsed-field gel electrophoresis typing of Hafnia alvei isolated from chub-packed and retail ground beef.	Gamage SD, Luchansky JB, Ingham SC.	Lett Appl Microbiol	10.1046/j.1472-765x.1998.00087.x	1998
	VIM-1 carbapenemase-producing Escherichia coli isolated from retail seafood, Germany 2016.	Roschanski N, Guenther S, Vu TTT, Fischer J, Semmler T, Huehn S, Alter T, Roesler U.	Euro Surveill	10.2807/1560-7917.es.2017.22.43.17-00032	2017
	Application of multiplex real-time polymerase chain reaction assay for simultaneous quantification of Escherichia coli virulence genes in oysters.	Maciel BM, de Mello FTB, Lopes ATS, Boehs G, Albuquerque GR.	J Food Sci Technol	10.1007/s13197-018-3200-4	2018
Pathogenicity	Antimicrobial susceptibility patterns, beta-lactamases, and biochemical identification of Yokenella regensburgei strains.	Stock I, Sherwood KJ, Wiedemann B.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2003.08.006	2004
Metabolism	Acquisition of plasmid-mediated cephalosporinase producing Enterobacteriaceae after a travel to the tropics.	Lorme F, Maataoui N, Rondinaud E, Esposito-Farese M, Clermont O, Ruppe E, Arlet G, Genel N, VOYAG-R study group, Matheron S, Andremont A, Armand-Lefevre L.	PLoS One	10.1371/journal.pone.0206909	2018
	Occurrence of Histamine-Forming Bacteria in Albacore and Histamine Accumulation in Muscle at Ambient Temperature	Kim SH, Price RJ, Morrissey MT, Field KG, Wei CI, An H.	J Food Sci	10.1111/j.1365-2621.2002.tb10315.x	2002
Genetics	Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping.	Mottawea W, Duceppe MO, Dupras AA, Usongo V, Jeukens J, Freschi L, Emond-Rheault JG, Hamel J, Kukavica-Ibrulj I, Boyle B, Gill A, Burnett E, Franz E, Arya G, Weadge JT, Gruenheid S, Wiedmann M, Huang H, Daigle F, Moineau S, Bekal S, Levesque RC, Goodridge LD, Ogunremi D.	Front Microbiol	10.3389/fmicb.2018.00836	2018
	Microbial diversity and biochemical profile of aguamiel collected from Agave salmiana and A. atrovirens during different seasons of year.	Isabel Enriquez-Salazar M, Veana F, Aguilar CN, De la Garza-Rodriguez IM, Lopez MG, Rutiaga-Quinones OM, Morlett-Chavez JA, Rodriguez-Herrera R.	Food Sci Biotechnol	10.1007/s10068-017-0141-z	2017
	Evaluation of Different Techniques, including Modified Atmosphere, under Vacuum Packaging, Washing, and Latilactobacillus sakei as a Bioprotective Agent, to Increase the Shelf-Life of Fresh Gutted Sea Bass (Dicentrarchus labrax) and Sea Bream (Sparus aurata) Stored at 6 ± 2 °C.	Iacumin L, Jayasinghe AS, Pellegrini M, Comi G.	Biology (Basel)	10.3390/biology11020217	2022
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	Prevalence of plasmid-mediated AmpC beta-lactamases in Enterobacteria isolated from urban and rural folks in Uganda.	Najjuka CF, Kateete DP, Lodiongo DK, Mambo O, Mocktar C, Kayondo W, Baluku H, Kajumbula HM, Essack SY, Joloba ML.	AAS Open Res	10.12688/aasopenres.13165.1	2020
	Host and geographical factors influence the thermal niche of enteric bacteria isolated from native Australian mammals.	Okada S, Gordon DM.	Mol Ecol	10.1046/j.0962-1083.2001.01384.x	2001
	Multidrug-Resistant Escherichia albertii: Co-occurrence of beta-Lactamase and MCR-1 Encoding Genes.	Li Q, Wang H, Xu Y, Bai X, Wang J, Zhang Z, Liu X, Miao Y, Zhang L, Li X, Zou N, Yan G, Chen X, Zhang J, Fu S, Fan R, Xu J, Li J, Xiong Y.	Front Microbiol	10.3389/fmicb.2018.00258	2018
Enzymology	Detection of Morganella morganii, a prolific histamine former, by the polymerase chain reaction assay with 16S rDNA-targeted primers.	Kim SH, An H, Field KG, Wei CI, Velazquez JB, Ben-Gigirey B, Morrissey MT, Price RJ, Pitta TP.	J Food Prot	10.4315/0362-028x-66.8.1385	2003
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Enzymology	Insights to the Structural Basis for the Stereospecificity of the Escherichia coli Phytase, AppA.	Acquistapace IM, Thompson EJ, Kuhn I, Bedford MR, Brearley CA, Hemmings AM.	Int J Mol Sci	10.3390/ijms23116346	2022
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	A multicenter, double-blind, randomized, comparison study of the efficacy and safety of tigecycline to imipenem/cilastatin to treat complicated intra-abdominal infections in hospitalized subjects in China.	Chen Y, Zhu D, Zhang Y, Zhao Y, Chen G, Li P, Xu L, Yan P, Hickman MA, Xu X, Tawadrous M, Wible M.	Ther Clin Risk Manag	10.2147/tcrm.s171821	2018
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Genetics	Extremophile Metal Resistance: Plasmid-Encoded Functions in Streptomyces mirabilis.	Brangsch H, Holler M, Kraube T, Waqas M, Schroeckh V, Brakhage AA, Bunk B, Sproer C, Overmann J, Kothe E.	Appl Environ Microbiol	10.1128/aem.00085-22	2022
Phylogeny	Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies.	Dauga C.	Int J Syst Evol Microbiol	10.1099/00207713-52-2-531	2002
Phylogeny	Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance.	Luo L, Wang H, Payne MJ, Liang C, Bai L, Zheng H, Zhang Z, Zhang L, Zhang X, Yan G, Zou N, Chen X, Wan Z, Xiong Y, Lan R, Li Q.	Microb Genom	10.1099/mgen.0.000710	2021
Biotechnology	Minimum growth temperatures of Hafnia alvei and other Enterobacteriaceae isolated from refrigerated meat determined with a temperature gradient incubator.	Ridell J, Korkeala H.	Int J Food Microbiol	10.1016/s0168-1605(96)01248-2	1997
	Use of matrix-assisted laser desorption/ionisation-time of flight mass spectrometry analyser in a diagnostic microbiology laboratory in a developing country.	Bulane A, Hoosen A.	Afr J Lab Med	10.4102/ajlm.v6i1.598	2017
	Characterization of CMY-2-type beta-lactamase-producing Escherichia coli isolated from chicken carcasses and human infection in a city of South Brazil.	Koga VL, Maluta RP, da Silveira WD, Ribeiro RA, Hungria M, Vespero EC, Nakazato G, Kobayashi RKT.	BMC Microbiol	10.1186/s12866-019-1550-3	2019
Pathogenicity	Rapid Detection of Polymyxin Resistance in Enterobacteriaceae.	Nordmann P, Jayol A, Poirel L.	Emerg Infect Dis	10.3201/eid2206.151840	2016
	Ceftazidime-Avibactam Resistance Mediated by the N³⁴⁶Y Substitution in Various AmpC beta-Lactamases.	Compain F, Debray A, Adjadj P, Dorchene D, Arthur M.	Antimicrob Agents Chemother	10.1128/aac.02311-19	2020
Enzymology	Cyclic Analogs of Desferrioxamine E Siderophore for ⁶⁸Ga Nuclear Imaging: Coordination Chemistry and Biological Activity in Staphylococcus aureus.	Mular A, Shanzer A, Kozlowski H, Hubmann I, Misslinger M, Krzywik J, Decristoforo C, Gumienna-Kontecka E.	Inorg Chem	10.1021/acs.inorgchem.1c02453	2021
	Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults.	Lewis JM, Mphasa M, Banda R, Beale MA, Heinz E, Mallewa J, Jewell C, Faragher B, Thomson NR, Feasey NA.	Nat Microbiol	10.1038/s41564-022-01216-7	2022
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	In vitro antibacterial activity of thymol and carvacrol and their effects on broiler chickens challenged with Clostridium perfringens.	Du E, Gan L, Li Z, Wang W, Liu D, Guo Y.	J Anim Sci Biotechnol	10.1186/s40104-015-0055-7	2015
	Study of Enterobacteriaceae during the manufacture and ripening of San Simon cheese	Tornadijo ME, Garcia MC, Fresno JM, Carballo J.	Food Microbiol	10.1006/fmic.2001.0423	2001
	Persistence of nasal colonization with human pathogenic bacteria and associated antimicrobial resistance in the German general population.	Kock R, Werner P, Friedrich AW, Fegeler C, Becker K, Prevalence of Multiresistant Microorganisms (PMM) Study Group, Prevalence of Multiresistant Microorganisms PMM Study Group.	New Microbes New Infect	10.1016/j.nmni.2015.11.004	2016
Enzymology	Therapeutic and biotechnological applications of substrate specific microbial aminopeptidases.	Nandan A, Nampoothiri KM.	Appl Microbiol Biotechnol	10.1007/s00253-020-10641-9	2020
	A note on Escherichia coli O157:H7 serotype in Turkish meat products.	Noveir MR, Dogan HB, Kadir Halkman A.	Meat Sci	10.1016/s0309-1740(00)00058-9	2000
	Environmental gut bacteria in European honey bees (Apis mellifera) from Australia and their relationship to the chalkbrood disease.	Khan S, Somerville D, Frese M, Nayudu M.	PLoS One	10.1371/journal.pone.0238252	2020
Phylogeny	Effect of the Manufacturing Process on the Microbiota, Organoleptic Properties and Volatilome of Three Salmon-Based Products.	Wiernasz N, Gigout F, Cardinal M, Cornet J, Rohloff J, Courcoux P, Vigneau E, Skirnisdottir S, Passerini D, Pilet MF, Leroi F.	Foods	10.3390/foods10112517	2021
	Evaluation of the FilmArray^® Pneumonia Plus Panel for Rapid Diagnosis of Hospital-Acquired Pneumonia in Intensive Care Unit Patients.	Cremet L, Gaborit B, Bouras M, Drumel T, Guillotin F, Poulain C, Persyn E, Lakhal K, Rozec B, Vibet MA, Roquilly A, Gibaud S.	Front Microbiol	10.3389/fmicb.2020.02080	2020
	Structure of the O-polysaccharide from the LPS of a Hafnia alvei strain isolated from a patient with suspect yersinosis.	Karlsson C, Jansson PE, Wollin R.	Carbohydr Res	10.1016/s0008-6215(97)00045-1	1997
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	Evidence of temporal postdischarge decontamination of bacteria by gliding electric discharges: application to Hafnia alvei.	Kamgang-Youbi G, Herry JM, Bellon-Fontaine MN, Brisset JL, Doubla A, Naitali M.	Appl Environ Microbiol	10.1128/aem.00120-07	2007
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Phylogeny	Enterohemorrhagic Escherichia coli O157 in milk and dairy products from Libya: Isolation and molecular identification by partial sequencing of 16S rDNA.	Garbaj AM, Awad EM, Azwai SM, Abolghait SK, Naas HT, Moawad AA, Gammoudi FT, Barbieri I, Eldaghayes IM.	Vet World	10.14202/vetworld.2016.1184-1189	2016
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Enzymology	An analysis of human pathogens found in horse/mule manure along the John Muir Trail in Kings Canyon and Sequoia and Yosemite National Parks.	Derlet RW, Carlson JR.	Wilderness Environ Med	10.1580/1080-6032(2002)013[0113:aaohpf]2.0.co;2	2002
	Upper respiratory tract colonization by gram-negative rods in patients with chronic lymphocytic leukemia: analysis of risk factors.	Korona-Glowniak I, Grywalska E, Chudzik B, Bojarska-Junak A, Malm A, Rolinski J, Rolinski J.	ScientificWorldJournal	10.1100/2012/617218	2012
	Lactobacillus reuteri Surface Mucus Adhesins Upregulate Inflammatory Responses Through Interactions With Innate C-Type Lectin Receptors.	Bene KP, Kavanaugh DW, Leclaire C, Gunning AP, MacKenzie DA, Wittmann A, Young ID, Kawasaki N, Rajnavolgyi E, Juge N.	Front Microbiol	10.3389/fmicb.2017.00321	2017
Pathogenicity	Antibacterial effect of protamine in combination with EDTA and refrigeration.	Hansen LT, Austin JW, Gill TA.	Int J Food Microbiol	10.1016/s0168-1605(01)00428-7	2001
	Selection of Multidrug-Resistant Bacteria in Medicated Animal Feeds.	Brown EEF, Cooper A, Carrillo C, Blais B.	Front Microbiol	10.3389/fmicb.2019.00456	2019
	beta -Lactamase-Producing Multidrug-Resistant Bacterial Pathogens from Tracheal Aspirates of Intensive Care Unit Patients at National Institute of Neurological and Allied Sciences, Nepal.	Khanal S, Joshi DR, Bhatta DR, Devkota U, Pokhrel BM.	ISRN Microbiol	10.1155/2013/847569	2013
Metabolism	Source and identification of histamine-producing bacteria from fresh and temperature-abused albacore.	Kim SH, Field KG, Morrissey MT, Price RJ, Wei CI, An H.	J Food Prot	10.4315/0362-028x-64.7.1035	2001
	Associations of Nutritional Behavior and Gut Microbiota with the Risk of COVID-19 in Healthy Young Adults in Poland.	Jagielski P, Luszczki E, Wnek D, Micek A, Boleslawska I, Piorecka B, Kawalec P.	Nutrients	10.3390/nu14020350	2022
Enzymology	Prolyl aminopeptidase is also present in Enterobacteriaceae: cloning and sequencing of the Hafnia alvei enzyme-gene and characterization of the expressed enzyme.	Kitazono A, Kitano A, Kabashima T, Ito K, Yoshimoto T.	J Biochem	10.1093/oxfordjournals.jbchem.a021265	1996
Enzymology	Bacteriological quality of aquacultured freshwater fish portions in prepackaged trays stored at 3 degrees C.	Gonzalez-Rodriguez MN, Sanz JJ, Santos JA, Otero A, Garcia-Lopez ML.	J Food Prot	10.4315/0362-028x-64.9.1399	2001
Pathogenicity	Prevalence of virulence and resistance to antibiotics in pathogenic enterococci isolated from mastitic cows.	Wu X, Hou S, Zhang Q, Ma Y, Zhang Y, Kan W, Zhao X.	J Vet Med Sci	10.1292/jvms.15-0718	2016
Phylogeny	Lactate dehydrogenase release assay from Vero cells to distinguish verotoxin producing Escherichia coli from non-verotoxin producing strains.	Roberts PH, Davis KC, Garstka WR, Bhunia AK.	J Microbiol Methods	10.1016/s0167-7012(00)00222-0	2001
	Absidia Corymbifera in an immune competent accident victim with multiple abdominal injuries: case report.	Belfiori R, Terenzi A, Marchesini L, Repetto A.	BMC Infect Dis	10.1186/1471-2334-7-46	2007
Metabolism	Chlorhexidine decontamination of sputum for culturing Mycobacterium tuberculosis.	Asmar S, Drancourt M.	BMC Microbiol	10.1186/s12866-015-0479-4	2015
Enzymology	Clinical significance of extraintestinal Hafnia alvei isolates from 61 patients and review of the literature.	Gunthard H, Pennekamp A.	Clin Infect Dis	10.1093/clinids/22.6.1040	1996
	3-Deoxy-octulosonic-acid-containing hexasaccharide fragment of unusual core type isolated from Hafnia alvei 2 lipopolysaccharide.	Ravenscroft N, Gamian A, Romanowska E.	Eur J Biochem	10.1111/j.1432-1033.1995.tb20215.x	1995
	The prevalence and risk of urinary tract infection in malnourished children: a systematic review and meta-analysis.	Uwaezuoke SN, Ndu IK, Eze IC.	BMC Pediatr	10.1186/s12887-019-1628-y	2019
Enzymology	The distribution of enteric bacteria from Australian mammals: host and geographical effects.	Gordon DM, FitzGibbon F.	Microbiology (Reading)	10.1099/00221287-145-10-2663	1999
Phylogeny	The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae.	Sproer C, Mendrock U, Swiderski J, Lang E, Stackebrandt E.	Int J Syst Bacteriol	10.1099/00207713-49-4-1433	1999
Enzymology	Hafnia alvei. Respiratory tract isolates in a community hospital over a three-year period and a literature review.	Klapholz A, Lessnau KD, Huang B, Talavera W, Boyle JF.	Chest	10.1378/chest.105.4.1098	1994
	Intestinal Microbiota in Colorectal Cancer Surgery.	Koliarakis I, Athanasakis E, Sgantzos M, Mariolis-Sapsakos T, Xynos E, Chrysos E, Souglakos J, Tsiaoussis J.	Cancers (Basel)	10.3390/cancers12103011	2020
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Phylogeny	Evaluating the occurrence of Escherichia albertii in chicken carcass rinses by PCR, Vitek analysis, and sequencing of the rpoB gene.	Lindsey RL, Fedorka-Cray PJ, Abley M, Turpin JB, Meinersmann RJ.	Appl Environ Microbiol	10.1128/aem.03681-14	2015
Enzymology	Structural analysis of the lipid A isolated from Hafnia alvei 32 and PCM 1192 lipopolysaccharides.	Lukasiewicz J, Jachymek W, Niedziela T, Kenne L, Lugowski C.	J Lipid Res	10.1194/jlr.m001362	2010
	Important aspects of the colonization of central venous catheter.	Andreoli-Pinto TJ, Graziano KU.	Boll Chim Farm		1999
Metabolism	Multivariate Optimization of the FLC-dc-APGD-Based Reaction-Discharge System for Continuous Production of a Plasma-Activated Liquid of Defined Physicochemical and Anti-Phytopathogenic Properties.	Dzimitrowicz A, Jamroz P, Pohl P, Babinska W, Terefinko D, Sledz W, Motyka-Pomagruk A.	Int J Mol Sci	10.3390/ijms22094813	2021
	Molecular Characterization of a Novel N-Acetylneuraminate Lyase from a Deep-Sea Symbiotic Mycoplasma.	Wang SL, Li YL, Han Z, Chen X, Chen QJ, Wang Y, He LS.	Mar Drugs	10.3390/md16030080	2018
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Metabolism	Inhibition of Low-Grade Inflammation by Anthocyanins after Microbial Fermentation in Vitro.	Kuntz S, Kunz C, Domann E, Wurdemann N, Unger F, Rompp A, Rudloff S.	Nutrients	10.3390/nu8070411	2016
Enzymology	Evaluation of the Amplidiag CarbaR+VRE Kit for Accurate Detection of Carbapenemase-Producing Bacteria.	Oueslati S, Girlich D, Dortet L, Naas T.	J Clin Microbiol	10.1128/jcm.01092-17	2018
Enzymology	Characteristics of alcohol dehydrogenases of certain aerobic bacteria representing human colonic flora.	Nosova T, Jousimies-Somer H, Kaihovaara P, Jokelainen K, Heine R, Salaspuro M.	Alcohol Clin Exp Res	10.1111/j.1530-0277.1997.tb03795.x	1997
Metabolism	Amino acid decarboxylase capability of microorganisms isolated in Spanish fermented meat products.	Santos MH.	Int J Food Microbiol	10.1016/s0168-1605(97)00129-3	1998
Enzymology	[The characteristics of the causative agents of suppurative-inflammatory complications in hemophiliacs].	Fedorovskaia EA, Nemirovskaia LN, Skachkova NK.	Mikrobiol Z		1998
Enzymology	Acid-base chemical mechanism of aspartase from Hafnia alvei.	Yoon MY, Thayer-Cook KA, Berdis AJ, Karsten WE, Schnackerz KD, Cook PF.	Arch Biochem Biophys	10.1006/abbi.1995.1348	1995
	Comparison of the microflora isolated from spoiled cold-smoked salmon from three smokehouses	Hansen LT, Huss HH.	Food Res Int	10.1016/s0963-9969(99)00049-6	1998
Metabolism	A New Ligand-Based Method for Purifying Active Human Plasma-Derived Ficolin-3 Complexes Supports the Phenomenon of Crosstalk between Pattern-Recognition Molecules and Immunoglobulins.	Man-Kupisinska A, Michalski M, Maciejewska A, Swierzko AS, Cedzynski M, Lugowski C, Lukasiewicz J.	PLoS One	10.1371/journal.pone.0156691	2016
Enzymology	Genetic environment of acquired bla(ACC-1) beta-lactamase gene in Enterobacteriaceae isolates.	Doloy A, Verdet C, Gautier V, Decre D, Ronco E, Hammami A, Philippon A, Arlet G.	Antimicrob Agents Chemother	10.1128/aac.00619-06	2006
	3-Deoxy-octulosonic acid-containing trisaccharide fragment of an unusual core type of some Hafnia alvei lipopolysaccharides.	Katzenellenbogen E, Gamian A, Romanowska E, Dabrowski U, Dabrowski J.	Biochem Biophys Res Commun	10.1006/bbrc.1993.1929	1993
	Histamine production by Raoultella ornithinolytica in mahi-mahi meat at various storage temperatures.	Lin CS, Kung HF, Lin CM, Tsai HC, Tsai YH.	J Food Drug Anal	10.1016/j.jfda.2014.06.010	2016
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	Topical antibiotics on tracheostoma prevents exogenous colonization and infection of lower airways in children.	Morar P, Makura Z, Jones A, Baines P, Selby A, Hughes J, van Saene R.	Chest	10.1378/chest.117.2.513	2000
Biotechnology	Soleris®Enterobacteriaceae for the Detection of Enterobacteriaceae in Select Foods: AOAC Performance Tested MethodSM 121901.	Alles S, Roman B, Betts G, Jordan S, Everis L, Montei C, Biswas P, Mozola M, Donofrio R.	J AOAC Int	10.1093/jaoacint/qsaa001	2020
Metabolism	Are there acyl-homoserine lactones within mammalian intestines?	Swearingen MC, Sabag-Daigle A, Ahmer BM.	J Bacteriol	10.1128/jb.01341-12	2013
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	Rapid diagnosis of bloodstream infections with PCR followed by mass spectrometry.	Jordana-Lluch E, Carolan HE, Gimenez M, Sampath R, Ecker DJ, Quesada MD, Modol JM, Armestar F, Blyn LB, Cummins LL, Ausina V, Martro E.	PLoS One	10.1371/journal.pone.0062108	2013
Pathogenicity	Rapid testing using the Verigene Gram-negative blood culture nucleic acid test in combination with antimicrobial stewardship intervention against Gram-negative bacteremia.	Bork JT, Leekha S, Heil EL, Zhao L, Badamas R, Johnson JK.	Antimicrob Agents Chemother	10.1128/aac.04259-14	2015
Enzymology	Risk factors for wound infection in health care facilities in Buea, Cameroon: aerobic bacterial pathogens and antibiogram of isolates.	Kihla AJ, Ngunde PJ, Evelyn MS, Gerard N, Ndip RN.	Pan Afr Med J	10.11604/pamj.2014.18.6.2304	2014
	The Escherichia coli ldcC gene encodes another lysine decarboxylase, probably a constitutive enzyme.	Yamamoto Y, Miwa Y, Miyoshi K, Furuyama J, Ohmori H.	Genes Genet Syst	10.1266/ggs.72.167	1997
Enzymology	Plasmid-encoded ACC-4, an extended-spectrum cephalosporinase variant from Escherichia coli.	Papagiannitsis CC, Tzouvelekis LS, Tzelepi E, Miriagou V.	Antimicrob Agents Chemother	10.1128/aac.00389-07	2007
	Sharing of virulence-associated properties at the phenotypic and genetic levels between enteropathogenic Escherichia coli and Hafnia alvei.	Albert MJ, Faruque SM, Ansaruzzaman M, Islam MM, Haider K, Alam K, Kabir I, Robins-Browne R.	J Med Microbiol	10.1099/00222615-37-5-310	1992
Metabolism	Electrochemical measurement of trace concentrations of biological hydrogen produced by Enterobacteriaceae.	Podesta JJ, Gutierrez-Navarro AM, Estrella CN, Esteso MA.	Res Microbiol	10.1016/s0923-2508(97)81904-3	1997
Pathogenicity	Carriage of antibiotic-resistant Gram-negative bacteria after discontinuation of selective decontamination of the digestive tract (SDD) or selective oropharyngeal decontamination (SOD).	de Jonge E, de Wilde RBP, Juffermans NP, Oostdijk EAN, Bernards AT, van Essen EHR, Kuijper EJ, Visser CE, Kesecioglu J, Bonten MJM.	Crit Care	10.1186/s13054-018-2170-2	2018
	[Hafnia alvei septicemia with shock and DIC in an adult with postoperative lung cancer].	Masaki H, Ide M, Mochinaga S, Kawachi Y, Fukuda K, Tsukamoto N, Watanabe K, Takahashi A, Nagatake T, Matsumoto K.	Kansenshogaku Zasshi	10.11150/kansenshogakuzasshi1970.65.1205	1991
	The structure of a glycerol teichoic acid-like O-specific polysaccharide of Hafnia alvei 1205.	Katzenellenbogen E, Romanowska E, Kocharova NA, Knirel YA, Shashkov AS, Kochetkov NK.	Carbohydr Res	10.1016/0008-6215(92)84023-l	1992
Enzymology	L-prolineaminopeptidase activity as a tool for identification and differentiation of Serratia marcescens, Serratia liquefaciens and Hafnia alvei strains.	Fanghanel S, Reissbrodt R, Giesecke H.	Zentralbl Bakteriol	10.1016/s0934-8840(11)80763-2	1991
	Heterogeneity of AmpC cephalosporinases of Hafnia alvei clinical isolates expressing inducible or constitutive ceftazidime resistance phenotypes.	Girlich D, Naas T, Bellais S, Poirel L, Karim A, Nordmann P.	Antimicrob Agents Chemother	10.1128/aac.44.11.3220-3223.2000	2000
Metabolism	EspE, a novel secreted protein of attaching and effacing bacteria, is directly translocated into infected host cells, where it appears as a tyrosine-phosphorylated 90 kDa protein.	Deibel C, Kramer S, Chakraborty T, Ebel F.	Mol Microbiol	10.1046/j.1365-2958.1998.00798.x	1998
Pathogenicity	New Insights into the Antibacterial Activity of Hydroxycoumarins against Ralstonia solanacearum.	Yang L, Ding W, Xu Y, Wu D, Li S, Chen J, Guo B.	Molecules	10.3390/molecules21040468	2016
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	Biogenic hydrogen and methane production from Chlorella vulgaris and Dunaliella tertiolecta biomass.	Lakaniemi AM, Hulatt CJ, Thomas DN, Tuovinen OH, Puhakka JA.	Biotechnol Biofuels	10.1186/1754-6834-4-34	2011
	Gut Microbiota as Potential Biomarker and/or Therapeutic Target to Improve the Management of Cancer: Focus on Colibactin-Producing Escherichia coli in Colorectal Cancer.	Veziant J, Villeger R, Barnich N, Bonnet M.	Cancers (Basel)	10.3390/cancers13092215	2021
	Metabolic Engineering for Valorization of Agri- and Aqua-Culture Sidestreams for Production of Nitrogenous Compounds by Corynebacterium glutamicum.	Wendisch VF, Nampoothiri KM, Lee JH.	Front Microbiol	10.3389/fmicb.2022.835131	2022
	Serological characterization of lipopolysaccharides of Hafnia alvei 1, 17, 31, 32, 38 and 39.	Romanowska A.	Arch Immunol Ther Exp (Warsz)		1991
Enzymology	Enterobacteriaceae found in high numbers in fish, minced meat and pasteurised milk or cream and the presence of toxin encoding genes.	Lindberg AM, Ljungh A, Ahrne S, Lofdahl S, Molin G.	Int J Food Microbiol	10.1016/s0168-1605(97)00104-9	1998
Metabolism	O-specific polysaccharide of Hafnia alvei lipopolysaccharide isolated from strain 1211. Structural study using chemical methods, gas-liquid chromatography/mass spectrometry and NMR spectroscopy.	Katzenellenbogen E, Romanowska E, Dabrowski U, Dabrowski J.	Eur J Biochem	10.1111/j.1432-1033.1991.tb16198.x	1991
Enzymology	Reassessment of the Role of Rapid Antigen Detection Tests in Diagnosis of Invasive Group A Streptococcal Infections.	Gazzano V, Berger A, Benito Y, Freydiere AM, Tristan A, Boisset S, Carricajo A, Poyart C, Vandenesch F, Descours G.	J Clin Microbiol	10.1128/jcm.02516-15	2016
	Two Kdo-heptose regions identified in Hafnia alvei 32 lipopolysaccharide: the complete core structure and serological screening of different Hafnia O serotypes.	Lukasiewicz J, Niedziela T, Jachymek W, Kenne L, Lugowski C.	J Bacteriol	10.1128/jb.00891-08	2009
Metabolism	Cloning and characterization of short-chain N-acyl homoserine lactone-producing Enterobacter asburiae strain L1 from lettuce leaves.	Lau YY, How KY, Yin WF, Chan KG.	Microbiologyopen	10.1002/mbo3.610	2018
Biotechnology	Study of Enterobacteriaceae throughout the manufacturing and ripening of hard goats' cheese.	Tornadijo E, Fresno JM, Carballo J, Martin-Sarmiento R.	J Appl Bacteriol	10.1111/j.1365-2672.1993.tb02772.x	1993
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Metabolism	Hydrolytic activity determination of Tail Tubular Protein A of Klebsiella pneumoniae bacteriophages towards saccharide substrates.	Brzozowska E, Pyra A, Pawlik K, Janik M, Gorska S, Urbanska N, Drulis-Kawa Z, Gamian A.	Sci Rep	10.1038/s41598-017-18096-1	2017
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	Inhibition of microbial growth in chub-packed ground beef by refrigeration (2 degrees C) and medium-dose (2.2 to 2.4 kGy) irradiation.	Gamage SD, Faith NG, Luchansky JB, Buege DR, Ingham SC.	Int J Food Microbiol	10.1016/s0168-1605(97)00073-1	1997
Enzymology	Relationship between the composition of the intestinal microbiota and the tracheal and intestinal colonization by opportunistic pathogens in intensive care patients.	Fontaine C, Armand-Lefevre L, Magnan M, Nazimoudine A, Timsit JF, Ruppe E.	PLoS One	10.1371/journal.pone.0237260	2020
Enzymology	Identification of the bacterium associated with haemorrhagic septicaemia in rainbow trout as Hafnia alvei.	Gelev I, Gelev E, Steigerwalt AG, Carter GP, Brenner DJ.	Res Microbiol	10.1016/0923-2508(90)90021-h	1990
Enzymology	Multinational evaluation of the BioFire® FilmArray® Pneumonia plus Panel as compared to standard of care testing.	Ginocchio CC, Garcia-Mondragon C, Mauerhofer B, Rindlisbacher C, and the EME Evaluation Program Collaborative.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-021-04195-5	2021
	Selective detection of carbohydrates and their peptide conjugates by ESI-MS using synthetic quaternary ammonium salt derivatives of phenylboronic acids.	Kijewska M, Kuc A, Kluczyk A, Waliczek M, Man-Kupisinska A, Lukasiewicz J, Stefanowicz P, Szewczuk Z.	J Am Soc Mass Spectrom	10.1007/s13361-014-0857-4	2014
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	Defining the Genetic Features of O-Antigen Biosynthesis Gene Cluster and Performance of an O-Antigen Serotyping Scheme for Escherichia albertii.	Wang H, Zheng H, Li Q, Xu Y, Wang J, Du P, Li X, Liu X, Zhang L, Zou N, Yan G, Zhang Z, Jing H, Xu J, Xiong Y.	Front Microbiol	10.3389/fmicb.2017.01857	2017
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Biotechnology	Quorum sensing in the context of food microbiology.	Skandamis PN, Nychas GJ.	Appl Environ Microbiol	10.1128/aem.00468-12	2012
Phylogeny	Re-speciation of the original reference strains of serovars in the Citrobacter freundii (Bethesda-Ballerup group) antigenic scheme of West and edwards.	Miki K, Tamura K, Sakazaki R, Kosako Y.	Microbiol Immunol	10.1111/j.1348-0421.1996.tb01160.x	1996
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Enzymology	Esp3I--a novel type IIs restriction endonuclease from Hafnia alvei that recognizes the sequence 5'-CGTCTC(N)1/5-3'.	Bitinaite J, Grigaite R, Maneliene Z, Butkus V, Janulaitis A.	Nucleic Acids Res	10.1093/nar/19.18.5076	1991
	Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing.	Poirier S, Rue O, Peguilhan R, Coeuret G, Zagorec M, Champomier-Verges MC, Loux V, Chaillou S.	PLoS One	10.1371/journal.pone.0204629	2018
Enzymology	The near-quantitative sampling of genomic DNA from various food-borne Eubacteria.	Irwin P, Nguyen L, He Y, Paoli G, Gehring A, Chen CY.	BMC Microbiol	10.1186/s12866-014-0326-z	2014
Phylogeny	The Changing Face of the Family Enterobacteriaceae (Order: "Enterobacterales"): New Members, Taxonomic Issues, Geographic Expansion, and New Diseases and Disease Syndromes.	Janda JM, Abbott SL.	Clin Microbiol Rev	10.1128/cmr.00174-20	2021
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Pathogenicity	Direct comparison of the BD phoenix system with the MicroScan WalkAway system for identification and antimicrobial susceptibility testing of Enterobacteriaceae and nonfermentative gram-negative organisms.	Snyder JW, Munier GK, Johnson CL.	J Clin Microbiol	10.1128/jcm.00075-08	2008
Pathogenicity	Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment.	Terrisse S, Derosa L, Iebba V, Ghiringhelli F, Vaz-Luis I, Kroemer G, Fidelle M, Christodoulidis S, Segata N, Thomas AM, Martin AL, Sirven A, Everhard S, Aprahamian F, Nirmalathasan N, Aarnoutse R, Smidt M, Ziemons J, Caldas C, Loibl S, Denkert C, Durand S, Iglesias C, Pietrantonio F, Routy B, Andre F, Pasolli E, Delaloge S, Zitvogel L.	Cell Death Differ	10.1038/s41418-021-00784-1	2021
Biotechnology	Attributes of microbial associations of meat growing as xenic batch cultures in a meat juice at 4 degrees C.	Drosinos EH, Board RG.	Int J Food Microbiol	10.1016/0168-1605(94)00131-o	1995
Enzymology	Hafnia alvei lipopolysaccharides: isolation, sugar composition and SDS-PAGE analysis.	Romanowska A, Katzenellenbogen E, Kulakowska M, Gamian A, Witkowska D, Mulczyk M, Romanowska E.	FEMS Microbiol Immunol	10.1111/j.1574-6968.1988.tb02368.x	1988
	Hafnia alvei septicemia in an infant with necrotizing enterocolitis.	Ginsberg HG, Goldsmith JP.	J Perinatol		1988
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	Modulating Gut Microbiota: An Emerging Approach in the Prevention and Treatment of Multiple Sclerosis.	Ullah H, Tovchiga O, Daglia M, Khan H.	Curr Neuropharmacol	10.2174/1570159x19666210217084827	2021
Metabolism	Neurotransmitter modulation by the gut microbiota.	Strandwitz P.	Brain Res	10.1016/j.brainres.2018.03.015	2018
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	The interplay between microbiota and brain-gut axis in epilepsy treatment.	Zhu H, Wang W, Li Y.	Front Pharmacol	10.3389/fphar.2024.1276551	2024
	Exercise-induced stress behavior, gut-microbiota-brain axis and diet: a systematic review for athletes.	Clark A, Mach N.	J Int Soc Sports Nutr	10.1186/s12970-016-0155-6	2016
	Minireview: Gut microbiota: the neglected endocrine organ.	Clarke G, Stilling RM, Kennedy PJ, Stanton C, Cryan JF, Dinan TG.	Mol Endocrinol	10.1210/me.2014-1108	2014
Metabolism	The Multifaceted Role of Serotonin in Intestinal Homeostasis.	Koopman N, Katsavelis D, Hove AST, Brul S, Jonge WJ, Seppen J.	Int J Mol Sci	10.3390/ijms22179487	2021
Genetics	Novel Aeromonas Phage Ahy-Yong1 and Its Protective Effects against Aeromonas hydrophila in Brocade Carp (Cyprinus aka Koi).	Pan L, Li D, Lin W, Liu W, Qu C, Qian M, Cai R, Zhou Q, Wang F, Tong Y.	Viruses	10.3390/v14112498	2022
Pathogenicity	A New Pipeline for Designing Phage Cocktails Based on Phage-Bacteria Infection Networks.	Molina F, Simancas A, Ramirez M, Tabla R, Roa I, Rebollo JE.	Front Microbiol	10.3389/fmicb.2021.564532	2021
Enzymology	Development of a PCR assay for detection of Yersinia ruckeri in tissues of inoculated and naturally infected trout.	Gibello A, Blanco MM, Moreno MA, Cutuli MT, Domenech A, Dominguez L, Fernandez-Garayzabal JF.	Appl Environ Microbiol	10.1128/aem.65.1.346-350.1999	1999
Phylogeny	Development of a combined selection and enrichment PCR procedure for Clostridium botulinum Types B, E, and F and its use to determine prevalence in fecal samples from slaughtered pigs.	Dahlenborg M, Borch E, Radstrom P.	Appl Environ Microbiol	10.1128/aem.67.10.4781-4788.2001	2001
	Bacterial Isolates Associated with Mortality Events in Brown Trout (Salmo trutta) Restocking Farms in Spain: A Descriptive Field Study.	Vargas-Gonzalez A, Barajas M, Perez-Sanchez T.	Animals (Basel)	10.3390/ani15172532	2025
	Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste.	Mathews SL, Epps MJ, Blackburn RK, Goshe MB, Grunden AM, Dunn RR.	R Soc Open Sci	10.1098/rsos.180748	2019
Phylogeny	Immunochemical studies of the lipopolysaccharides of Hafnia alvei PCM 1219 and other strains with the O-antigens containing D-glucose 1-phosphate and 2-deoxy-2-[(R)-3-hydroxybutyramido]-D-glucose.	Katzenellenbogen E, Kocharova NA, Korzeniowska-Kowal A, Gamian A, Bogulska M, Szostko B, Shashkov AS, Knirel YA	Arch Immunol Ther Exp (Warsz)	10.1007/s00005-008-0034-1	2008
Phylogeny	Identification of two distinct hybridization groups in the genus Hafnia by 16S rRNA gene sequencing and phenotypic methods.	Janda JM, Abbott SL, Bystrom S, Probert WS	J Clin Microbiol	10.1128/JCM.43.7.3320-3323.2005	2005
Metabolism	Phenotypic and genotypic properties of the genus Hafnia.	Janda JM, Abbott SL, Khashe S, Probert W	J Med Microbiol	10.1099/0022-1317-51-7-575	2002
Genetics	Reinvestigation of the O-specific polysaccharides of Hafnia alvei lipopolysaccharides isolated from strains ATCC 13337 and 1187.	Gamian A, Katzenellenbogen E, Romanowska E, Grosskurth H, Dabrowski J	Carbohydr Res	10.1016/s0008-6215(98)00035-4	1998
Genetics	Lipopolysaccharide core region of Hafnia alvei: structure elucidation using chemical methods, gas chromatography-mass spectrometry, and NMR spectroscopy.	Gamian A, Katzenellenbogen E, Romanowska E, Dabrowski U, Dabrowski J	Carbohydr Res	10.1016/0008-6215(94)00266-i	1995
Genetics	Lipopolysaccharide core region of Hafnia alvei: serological characterization.	Lugowski C, Jachymek W, Niedziela T, Romanowska A, Witkowska D, Romanowska E	FEMS Immunol Med Microbiol	10.1111/j.1574-695X.1995.tb00020.x	1995
Genetics	Structural and serological characterization of Hafnia alvei lipopolysaccharide core region.	Lugowski C, Niedziela T, Jachymek W, Klonowska A, Czarny A, Rowinski S, Petersson C, Kenne L	Acta Biochim Pol		1995
Genetics	Serological and structural features of Hafnia alvei lipopolysaccharides containing D-3-hydroxybutyric acid.	Romanowska A, Gamian A, Witkowska D, Katzenellenbogen E, Romanowska E	FEMS Immunol Med Microbiol	10.1111/j.1574-695X.1994.tb00429.x	1994
Phylogeny	Structural studies on Hafnia alvei 114-60 O-antigen.	Katzenellenbogen E, Romanowska E, Witkowska D, Bogulska M, Dabrowski J	Arch Immunol Ther Exp (Warsz)		1990
Genetics	O-specific polysaccharides of Hafnia alvei lipopolysaccharides isolated from two serologically related strains: ATCC 13337 and 1187. A serological and structural study using chemical methods, gas chromatography/mass spectrometry and NMR spectroscopy at 500 MHz.	Gamian A, Romanowska E, Opferkuch HJ, Hauck M, Dabrowski J	Eur J Biochem	10.1111/j.1432-1033.1989.tb15251.x	1989
Phylogeny	Gram-negative bacteria associated with brewery yeasts: reclassification of Obesumbacterium proteus biogroup 2 as Shimwellia pseudoproteus gen. nov., sp. nov., and transfer of Escherichia blattae to Shimwellia blattae comb. nov.	Priest FG, Barker M.	Int J Syst Evol Microbiol	10.1099/ijs.0.013458-0	2010
Phylogeny	Escherichia albertii sp. nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children.	Huys G, Huys G, Cnockaert M, Janda JM, Swings J.	Int J Syst Evol Microbiol	10.1099/ijs.0.02475-0	2003
Phylogeny	Hafnia psychrotolerans sp. nov., isolated from lake water.	Gu Z, Liu Y, Shen L, Liu X, Xiao N, Jiao N, Liu H, Zhou Y, Zhang S	Int J Syst Evol Microbiol	10.1099/ijs.0.000049	2015
Phylogeny	Hafnia paralvei sp. nov., formerly known as Hafnia alvei hybridization group 2.	Huys G, Cnockaert M, Abbott SL, Janda JM, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.018606-0	2009

References

#9173	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30163
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41708	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116316	Collection of Institut Pasteur ; Curators of the CIP; CIP 57.31
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hafnia alvei (DSM 30163, ATCC 13337, CIP 57.31)

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