Cite this strain

Hafnia alvei (DSM 24119, 1004)

Name: Hafnia alvei (DSM 24119, 1004)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130955

Type strain

Strain Designation 1004

Culture col. no. DSM 24119 1004

NCBI tax ID(s) 569

Special Collections DSMZ

History <- M. Jünger, Universitätsmedizin Göttingen, Abt. Anaesthesiologie, Georg-August-Universität,Germany; 1004 <- Abt. Medizinische Mikrobiologie

Links

Hafnia alvei 1004 is a human pathogen that was isolated from tracheal aspirate.

human pathogen genome sequence Bacteria

Name and taxonomic classification

SI-ID 404921

DSM 24119

@ref 20215

Last LPSN update 2026-02-09 11:31:21

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Hafniaceae

Genus Hafnia

Species Hafnia alvei

Full scientific name Hafnia alvei Møller 1954 (Approved Lists 1980)

BacDive ID	Other strains from **Hafnia alvei** (48)	Type strain
4938	H. alvei Type 32011, DSM 30163, ATCC 13337, CIP 57.31, ... (type strain)
4934	H. alvei 5-5, DSM 15533
4935	H. alvei type 32011, DSM 30097, ATCC 11604
4936	H. alvei WS 10209, DSM 30098
4937	H. alvei 21183, DSM 30101
23928	H. alvei WS 20745, DSM 30099
131728	H. alvei FB1, DSM 102038
134802	H. alvei mutant 11, CIP 66.52
134803	H. alvei mutant 2, CIP 66.41
135651	H. alvei mutant 14, CIP 66.48
135652	H. alvei mutant 15, CIP 66.49
135774	H. alvei CIP 66.53
135815	H. alvei CIP A250
137092	H. alvei mutant 7, CIP 66.44
137118	H. alvei mutant 17, CIP 66.50
137119	H. alvei CIP 66.51
137727	H. alvei 1, CIP 106815
138463	H. alvei CIP 66.40
138919	H. alvei mutant 4, CIP 66.42
138921	H. alvei mutant 6, CIP 66.43
138922	H. alvei mutant 8, CIP 66.45
138923	H. alvei mutant 9, CIP 66.46
138924	H. alvei mutant 12, CIP 66.47
139255	H. alvei 5632-72, CIP 104949, ATCC 29926
141268	H. alvei CCUG 497
141755	H. alvei CCUG 6330, NCTC 8106
145307	H. alvei CCUG 28135
145757	H. alvei CCUG 29511
145758	H. alvei CCUG 29513
145769	H. alvei CCUG 29545
146069	H. alvei CCUG 30329
146238	H. alvei CCUG 30687
146257	H. alvei CCUG 30716
146483	H. alvei CCUG 31269
146560	H. alvei CCUG 31437
147162	H. alvei CCUG 32973
148768	H. alvei CCUG 35918
149558	H. alvei CCUG 37955
150541	H. alvei CCUG 41540
150573	H. alvei CCUG 41637
150811	H. alvei CCUG 42414
152052	H. alvei CCUG 45642
152201	H. alvei CCUG 46053
155828	H. alvei CCUG 59411
155960	H. alvei CCUG 59789
163286	H. alvei JCM 24184, ATCC 9760, NCTC 6578
171064	H. alvei CIMB 05-1105, CRBIP17.81
174475	H. alvei 115327, DSM 115327

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.6
125438	negative	99.5

Multimedia

@ref:	22247
multimedia content:	DSM_24119.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_24119.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22247	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22247	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	92.8

Spore formation

@ref	Spore formation	Confidence
125439		93.3

Compound production

22247

Compoundvolatile organic compounds

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Trachea
#Host Body Product	#Fluids	#Aspirate

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22247	tracheal aspirate	Göttingen	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
22247			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	Hafnia paralvei strain FDAARGOS_1502	complete		546367.116	546367	98.63
66792	Hafnia paralvei strain FDAARGOS_1502	complete		546367.115	546367	98.63
66792	ASM2045028v1 assembly for Hafnia paralvei FDAARGOS_1502	complete	GCA_020450285	546367.114	546367	73.48

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hafnia paralvei strain FDAARGOS_1502
PATRIC: 546367.114

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.30	no
125439	motility	BacteriaNetⓘ	yes	72.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hafnia paralvei strain FDAARGOS_1502 strain Not applicable
PATRIC: 546367.114

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	96.02	no
125438	spore-forming	spore-formingⓘ	no	88.79	no
125438	aerobic	aerobicⓘ	no	60.29	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	73.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Ion mobility spectrometry for microbial volatile organic compounds: a new identification tool for human pathogenic bacteria.	Junger M, Vautz W, Kuhns M, Hofmann L, Ulbricht S, Baumbach JI, Quintel M, Perl T.	Appl Microbiol Biotechnol	10.1007/s00253-012-3924-4	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22247	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24119
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Hafnia alvei (DSM 24119, 1004)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_020450285

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media