Hafnia alvei (DSM 30099, WS 20745)

Name: Hafnia alvei (DSM 30099, WS 20745)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23928

Type strain

Strain Designation WS 20745

Culture col. no. DSM 30099 WS 20745

NCBI tax ID(s) 569

Special Collections DSMZ

History <- Bakteriologisches Institut der Sueddeutschen Versuchs- und Forschungsanstalt fuer Milchwirtschaft, Freising-Weihenstephan, Germany; WS 20745

Links

Hafnia alvei WS 20745 is a mesophilic human pathogen that was isolated from minced meat.

mesophilic human pathogen genome sequence

Name and taxonomic classification

SI-ID 113630

DSM 30099

@ref 20215

Last LPSN update 2025-12-16 09:52:45

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Hafniaceae

Genus Hafnia

Species Hafnia alvei

Full scientific name Hafnia alvei Møller 1954 (Approved Lists 1980)

BacDive ID	Other strains from **Hafnia alvei** (48)	Type strain
4938	H. alvei Type 32011, DSM 30163, ATCC 13337, CIP 57.31, ... (type strain)
130955	H. alvei 1004, DSM 24119
4934	H. alvei 5-5, DSM 15533
4935	H. alvei type 32011, DSM 30097, ATCC 11604
4936	H. alvei WS 10209, DSM 30098
4937	H. alvei 21183, DSM 30101
131728	H. alvei FB1, DSM 102038
134802	H. alvei mutant 11, CIP 66.52
134803	H. alvei mutant 2, CIP 66.41
135651	H. alvei mutant 14, CIP 66.48
135652	H. alvei mutant 15, CIP 66.49
135774	H. alvei CIP 66.53
135815	H. alvei CIP A250
137092	H. alvei mutant 7, CIP 66.44
137118	H. alvei mutant 17, CIP 66.50
137119	H. alvei CIP 66.51
137727	H. alvei 1, CIP 106815
138463	H. alvei CIP 66.40
138919	H. alvei mutant 4, CIP 66.42
138921	H. alvei mutant 6, CIP 66.43
138922	H. alvei mutant 8, CIP 66.45
138923	H. alvei mutant 9, CIP 66.46
138924	H. alvei mutant 12, CIP 66.47
139255	H. alvei 5632-72, CIP 104949, ATCC 29926
141268	H. alvei CCUG 497
141755	H. alvei CCUG 6330, NCTC 8106
145307	H. alvei CCUG 28135
145757	H. alvei CCUG 29511
145758	H. alvei CCUG 29513
145769	H. alvei CCUG 29545
146069	H. alvei CCUG 30329
146238	H. alvei CCUG 30687
146257	H. alvei CCUG 30716
146483	H. alvei CCUG 31269
146560	H. alvei CCUG 31437
147162	H. alvei CCUG 32973
148768	H. alvei CCUG 35918
149558	H. alvei CCUG 37955
150541	H. alvei CCUG 41540
150573	H. alvei CCUG 41637
150811	H. alvei CCUG 42414
152052	H. alvei CCUG 45642
152201	H. alvei CCUG 46053
155828	H. alvei CCUG 59411
155960	H. alvei CCUG 59789
163286	H. alvei JCM 24184, ATCC 9760, NCTC 6578
171064	H. alvei CIMB 05-1105, CRBIP17.81
174475	H. alvei 115327, DSM 115327

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.985
125439	negative	95.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20594	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20594	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.135
125439		97.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Meat

Isolation

20594

Sample typeminced meat

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
20594			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM1934489v1 assembly for Hafnia alvei FDAARGOS_1439	contig	GCA_019344895	569.199	569	77.56
66792	ASM81880v2 assembly for Hafnia alvei DSM 30099	contig	GCA_000818805	569.28	569	68.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hafnia alvei DSM 30099
NCBI: GCA_000818805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.80	no
125439	motility	BacteriaNetⓘ	yes	68.20	no
125439	gram_stain	BacteriaNetⓘ	negative	95.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	81.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hafnia alvei strain DSM 30099
PATRIC: 569.28

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.99	no
125438	anaerobic	anaerobicⓘ	no	95.05	no
125438	spore-forming	spore-formingⓘ	no	90.14	no
125438	aerobic	aerobicⓘ	no	61.49	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	75.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of a commensal bacterium, Hafnia alvei CBA7124, isolated from human feces.	Song HS, Kim JY, Kim YB, Jeong MS, Kang J, Rhee JK, Kwon J, Kim JS, Choi JS, Choi HJ, Nam YD, Roh SW.	Gut Pathog	10.1186/s13099-017-0190-0	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20594	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30099
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hafnia alvei (DSM 30099, WS 20745)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019344895

Genome-based predictions

Predictions

Literature

Literature

References

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