Strain identifier
BacDive ID: 4938
Type strain:
Species: Hafnia alvei
Strain history: CIP <- 1957, NCTC <- 1950, C.A. Stuart, Rhode Island
NCBI tax ID(s): 910996 (strain), 569 (species)
General
@ref: 9173
BacDive-ID: 4938
DSM-Number: 30163
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile, human pathogen
description: Hafnia alvei DSM 30163 is a facultative anaerobe, mesophilic, motile human pathogen that was isolated from Unknown source.
NCBI tax id
NCBI tax id | Matching level |
---|---|
569 | species |
910996 | strain |
strain history
@ref | history |
---|---|
9173 | <- ATCC <- NCTC <- C.A. Stuart, type 32011 |
67770 | Y. Kosako 82061 <-- R. Sakazaki 286 <-- ATCC 13337 <-- NCTC 8105 <-- C. A. Stuart (type 32011). |
116316 | CIP <- 1957, NCTC <- 1950, C.A. Stuart, Rhode Island |
doi: 10.13145/bacdive4938.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Hafniaceae
- genus: Hafnia
- species: Hafnia alvei
- full scientific name: Hafnia alvei Møller 1954 (Approved Lists 1980)
@ref: 9173
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Hafniaceae
genus: Hafnia
species: Hafnia alvei
full scientific name: Hafnia alvei Møller 1954
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 96.771 | ||
69480 | 99.981 | negative | ||
116316 | yes | negative | rod-shaped |
multimedia
- @ref: 9173
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_30163.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9173 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
9173 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
41708 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
116316 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9173 | positive | growth | 30 | mesophilic |
41708 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
116316 | positive | growth | 10-41 | |
116316 | no | growth | 5 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116316
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.15 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | - | hydrolysis |
116316 | 29864 | mannitol | + | fermentation |
116316 | 16947 | citrate | - | carbon source |
116316 | 17234 | glucose | + | fermentation |
116316 | 17716 | lactose | - | fermentation |
116316 | 17632 | nitrate | + | reduction |
116316 | 16301 | nitrite | - | reduction |
116316 | 15792 | malonate | + | assimilation |
116316 | 132112 | sodium thiosulfate | - | builds gas from |
116316 | 17234 | glucose | + | degradation |
antibiotic resistance
- @ref: 116316
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
116316 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
116316 | 15688 | acetoin | + | ||
116316 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
116316 | oxidase | - | |
116316 | beta-galactosidase | + | 3.2.1.23 |
116316 | alcohol dehydrogenase | - | 1.1.1.1 |
116316 | gelatinase | - | |
116316 | catalase | + | 1.11.1.6 |
116316 | lysine decarboxylase | + | 4.1.1.18 |
116316 | ornithine decarboxylase | + | 4.1.1.17 |
116316 | tryptophan deaminase | - | |
116316 | urease | + | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116316 | - | + | + | - | - | + | - | - | - | - | + | + | - | + | - | + | + | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9173 | + | - | + | + | + | - | + | - | - | + | - | + | + | - | - | + | - | - | + | + | - |
9173 | + | - | + | + | + | - | + | - | - | + | - | + | + | - | - | + | - | - | + | + | - |
9173 | + | - | + | + | + | - | + | - | - | + | - | + | + | - | - | + | - | - | + | + | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116316 | + | + | + | + | + | - | - | - | - | + | + | - | - | - | - | - | + | + | + | + | + | + | - | + | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | + | + | - | - | + | + | + | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | + | + | - | + | - | - | - | + | - | - | + | + | + | + | + | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 116316
- sample type: Unknown source
- isolation date: 1919
taxonmaps
- @ref: 69479
- File name: preview.99_934.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_106;97_324;98_734;99_934&stattab=map
- Last taxonomy: Yersiniaceae
- 16S sequence: AB519795
- Sequence Identity:
- Total samples: 27485
- soil counts: 2075
- aquatic counts: 4333
- animal counts: 18887
- plant counts: 2190
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
9173 | yes | yes | 2 | Risk group (German classification) |
116316 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Hafnia alvei ATCC 13337 16S ribosomal RNA gene, partial sequence | M59155 | 1488 | ena | 910996 |
20218 | Hafnia alvei gene for 16S ribosomal RNA, partial sequence | AB519795 | 1473 | ena | 569 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Hafnia alvei ATCC 13337 | 910996.5 | wgs | patric | 910996 |
66792 | Hafnia alvei ATCC 13337 | 910996.3 | wgs | patric | 910996 |
66792 | Hafnia alvei strain NCTC8105 | 569.79 | wgs | patric | 569 |
66792 | Hafnia alvei Stuart 32011, ATCC 13337 | 2588253788 | draft | img | 910996 |
67770 | Hafnia alvei ATCC 13337 | GCA_000735375 | contig | ncbi | 910996 |
67770 | Hafnia alvei ATCC 13337 | GCA_003668715 | contig | ncbi | 910996 |
67770 | Hafnia alvei NCTC8105 | GCA_900451105 | contig | ncbi | 569 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 87.592 | no |
flagellated | yes | 57.29 | no |
gram-positive | no | 97.784 | no |
anaerobic | no | 95.831 | no |
halophile | no | 92.006 | no |
spore-forming | no | 94.675 | no |
thermophile | no | 99.173 | yes |
glucose-util | yes | 94.43 | no |
aerobic | yes | 85.613 | no |
glucose-ferment | yes | 92.62 | no |
External links
@ref: 9173
culture collection no.: DSM 30163, ATCC 13337, CIP 57.31, NCDC 434-68, NCTC 8105, WDCM 00095, JCM 1666, CCUG 15720, CCUG 41547, CECT 158, CGMCC 1.2026, HAMBI 1876, LMG 10392, NBRC 105685, NCIMB 11999, NCIMB 13060, NRRL B-4260, VTT E-022142, VTT E-991294
straininfo link
- @ref: 74434
- straininfo: 92428
literature
topic | Pubmed-ID | title | authors | journal | year | mesh | topic2 | DOI |
---|---|---|---|---|---|---|---|---|
Phylogeny | 1718234 | Structural studies on Hafnia alvei 114-60 O-antigen. | Katzenellenbogen E, Romanowska E, Witkowska D, Bogulska M, Dabrowski J | Arch Immunol Ther Exp (Warsz) | 1990 | Antigens, Bacterial/*chemistry, Carbohydrate Sequence, Cross Reactions, Enterobacteriaceae/classification/*immunology, Lipopolysaccharides/chemistry/immunology, Magnetic Resonance Spectroscopy, Methylation, Molecular Sequence Data, Molecular Structure, O Antigens, Species Specificity | Genetics | |
Genetics | 2606108 | O-specific polysaccharides of Hafnia alvei lipopolysaccharides isolated from two serologically related strains: ATCC 13337 and 1187. A serological and structural study using chemical methods, gas chromatography/mass spectrometry and NMR spectroscopy at 500 MHz. | Gamian A, Romanowska E, Opferkuch HJ, Hauck M, Dabrowski J | Eur J Biochem | 1989 | Carbohydrate Conformation, Carbohydrate Sequence, Enterobacteriaceae/*immunology, Gas Chromatography-Mass Spectrometry, *Lipopolysaccharides, Magnetic Resonance Spectroscopy, Methylation, Molecular Sequence Data, Polysaccharides/*isolation & purification | Enzymology | 10.1111/j.1432-1033.1989.tb15251.x |
Genetics | 7535188 | Lipopolysaccharide core region of Hafnia alvei: structure elucidation using chemical methods, gas chromatography-mass spectrometry, and NMR spectroscopy. | Gamian A, Katzenellenbogen E, Romanowska E, Dabrowski U, Dabrowski J | Carbohydr Res | 1995 | Carbohydrate Sequence, Enterobacteriaceae/*chemistry/immunology, Lipopolysaccharides/*chemistry, Magnetic Resonance Spectroscopy, Methylation, Molecular Sequence Data, O Antigens, Phosphorylation, Polysaccharides, Bacterial/*chemistry | 10.1016/0008-6215(94)00266-i | |
Genetics | 7653161 | Structural and serological characterization of Hafnia alvei lipopolysaccharide core region. | Lugowski C, Niedziela T, Jachymek W, Klonowska A, Czarny A, Rowinski S, Petersson C, Kenne L | Acta Biochim Pol | 1995 | Carbohydrate Sequence, Chromatography, Gel, Enterobacteriaceae/*chemistry, Gas Chromatography-Mass Spectrometry, Glucose/chemistry, Heptoses/chemistry, Lipopolysaccharides/*chemistry/*immunology, Magnetic Resonance Spectroscopy, Mannose/chemistry, Methylation, Molecular Sequence Data, Oxidation-Reduction, Tetanus Toxoid/immunology | ||
Genetics | 7719279 | Lipopolysaccharide core region of Hafnia alvei: serological characterization. | Lugowski C, Jachymek W, Niedziela T, Romanowska A, Witkowska D, Romanowska E | FEMS Immunol Med Microbiol | 1995 | Animals, Carbohydrate Sequence, Enterobacteriaceae/*immunology, Immune Sera/immunology, Immunoblotting, Lipopolysaccharides/*immunology, Molecular Sequence Data, Oligosaccharides/immunology, Rabbits | 10.1111/j.1574-695X.1995.tb00020.x | |
Genetics | 8156055 | Serological and structural features of Hafnia alvei lipopolysaccharides containing D-3-hydroxybutyric acid. | Romanowska A, Gamian A, Witkowska D, Katzenellenbogen E, Romanowska E | FEMS Immunol Med Microbiol | 1994 | 3-Hydroxybutyric Acid, Animals, Antibodies, Bacterial/immunology, Antigens, Bacterial/*chemistry/immunology, Carbohydrate Sequence, Cross Reactions, Enterobacteriaceae/*chemistry/immunology, Hydroxybutyrates/*chemistry/immunology, Immunoblotting, Immunoelectrophoresis, Lipopolysaccharides/*chemistry/immunology, Molecular Sequence Data, Rabbits | Enzymology | 10.1111/j.1574-695X.1994.tb00429.x |
Genetics | 9658571 | Reinvestigation of the O-specific polysaccharides of Hafnia alvei lipopolysaccharides isolated from strains ATCC 13337 and 1187. | Gamian A, Katzenellenbogen E, Romanowska E, Grosskurth H, Dabrowski J | Carbohydr Res | 1998 | Carbohydrate Conformation, Carbohydrate Sequence, Enterobacteriaceae/*chemistry/immunology, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, O Antigens/*chemistry/isolation & purification, Oligosaccharides/chemistry | Enzymology | 10.1016/s0008-6215(98)00035-4 |
Metabolism | 12132774 | Phenotypic and genotypic properties of the genus Hafnia. | Janda JM, Abbott SL, Khashe S, Probert W | J Med Microbiol | 2002 | Adhesins, Bacterial/genetics, Animals, Arabinose/metabolism, Arbutin/metabolism, Bacterial Typing Techniques, Bangladesh, Benzyl Alcohols/metabolism, Carrier Proteins/genetics, Diarrhea/*microbiology, Electrophoresis, Gel, Pulsed-Field, Escherichia coli/classification/genetics, *Escherichia coli Proteins, Esculin/metabolism, Fermentation, Genes, Bacterial, Genotype, Glucosides, Hafnia alvei/*classification/*genetics, Humans, Hydrolysis, Phenotype, RNA, Ribosomal, 16S/genetics, beta-Glucosidase/metabolism | Phylogeny | 10.1099/0022-1317-51-7-575 |
Phylogeny | 16000455 | Identification of two distinct hybridization groups in the genus Hafnia by 16S rRNA gene sequencing and phenotypic methods. | Janda JM, Abbott SL, Bystrom S, Probert WS | J Clin Microbiol | 2005 | Bacterial Typing Techniques, DNA, Bacterial/*analysis, Enterobacteriaceae Infections/microbiology, Genes, rRNA, Hafnia/*classification/*genetics, Hafnia alvei/classification/genetics, Humans, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/*genetics, *Sequence Analysis, DNA | Pathogenicity | 10.1128/JCM.43.7.3320-3323.2005 |
Phylogeny | 18836891 | Immunochemical studies of the lipopolysaccharides of Hafnia alvei PCM 1219 and other strains with the O-antigens containing D-glucose 1-phosphate and 2-deoxy-2-[(R)-3-hydroxybutyramido]-D-glucose. | Katzenellenbogen E, Kocharova NA, Korzeniowska-Kowal A, Gamian A, Bogulska M, Szostko B, Shashkov AS, Knirel YA | Arch Immunol Ther Exp (Warsz) | 2008 | Antigens, Bacterial/analysis/*immunology, Glucose/*analogs & derivatives/chemistry, Glucosephosphates/*chemistry, Glycosylation, Hafnia alvei/classification/*metabolism, Nuclear Magnetic Resonance, Biomolecular, O Antigens/chemistry/*immunology, Polysaccharides, Bacterial/chemistry/*immunology, Stereoisomerism | Metabolism | 10.1007/s00005-008-0034-1 |
Phylogeny | 19734282 | Hafnia paralvei sp. nov., formerly known as Hafnia alvei hybridization group 2. | Huys G, Cnockaert M, Abbott SL, Janda JM, Vandamme P | Int J Syst Evol Microbiol | 2009 | Bacterial Proteins/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Enterobacteriaceae Infections/microbiology, Feces/microbiology, Hafnia/*classification/enzymology/genetics/*isolation & purification, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, beta-Glucosidase/metabolism | Metabolism | 10.1099/ijs.0.018606-0 |
Phylogeny | 25563917 | Hafnia psychrotolerans sp. nov., isolated from lake water. | Gu Z, Liu Y, Shen L, Liu X, Xiao N, Jiao N, Liu H, Zhou Y, Zhang S | Int J Syst Evol Microbiol | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hafnia/*genetics/growth & development/isolation & purification, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics | 10.1099/ijs.0.000049 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9173 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30163) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30163 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41708 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/9616 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
74434 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92428.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116316 | Curators of the CIP | Collection of Institut Pasteur (CIP 57.31) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2057.31 |