Name: Hafnia alvei WS 10209
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4936

Type strain:

Species: Hafnia alvei

Strain Designation: WS 10209

Culture col. no.: DSM 30098

Strain history: <- Bakteriologisches Institut der Sueddeutschen Versuchs- und Forschungsanstalt fuer Milchwirtschaft, Freising-Weihenstephan, Germany; WS 10209

NCBI tax ID(s): 569 (species)

SI-ID 49691

DSM 30098

Special Collections

DSMZ

Other strains from Hafnia alvei

Section

Hafnia alvei WS 10209 is a Gram-negative human pathogen that was isolated from raw milk.

Gram-negative
human pathogen
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Hafniaceae*
	Genus	*Hafnia*
	Species	**Hafnia alvei**
	Full Scientific Name (LPSN)	Hafnia alvei Møller 1954 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.485

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9131]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #9131]

Culture medium growth

[Ref.: #9131]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9131]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9131]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9131]	Sample type/isolated from	raw milk
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Milk
#Host	#Mammals	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9131]	Pathogenicity (human)	yes
[Ref.: #9131]	Pathogenicity (animal)	yes
[Ref.: #9131]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hafnia alvei DSM 30098	GCA_000818795	contig	GenBank ENA	569 tax ID	*
[Ref.: #66792]	Hafnia alvei strain DSM 30098	569.27	wgs	PATRIC	569 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hafnia alvei strain DSM 30098 PATRIC: 569.27
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hafnia alvei strain DSM 30098 PATRIC: 569.27
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.485	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.546	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.953	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	61.398	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	74.105	no

Availability in culture collections External links

[Ref.: #9131]

Culture collection no.

DSM 30098

[Ref.: #74432]

SI-ID 49691

References

#9131

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30098

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74432

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49691.1 )

* These data were automatically processed and therefore are not curated

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Hafnia alvei strain DSM 30098

Hafnia alvei strain DSM 30098

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