Name: Hafnia alvei WS 10209
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4936

Type strain:

Species: Hafnia alvei

Strain Designation: WS 10209

Culture col. no.: DSM 30098

Strain history: <- Bakteriologisches Institut der Sueddeutschen Versuchs- und Forschungsanstalt fuer Milchwirtschaft, Freising-Weihenstephan, Germany; WS 10209

NCBI tax ID(s): 569 (species)

SI-ID 49691

DSM 30098

Other strains from Hafnia alvei

H. alvei DSM 30163, ATCC 13337, CIP 57.31, ... (type strain)
H. alvei 1004, DSM 24119
H. alvei 5-5, DSM 15533
H. alvei type 32011, DSM 30097, ATCC 11604
H. alvei 21183, DSM 30101
H. alvei WS 20745, DSM 30099
H. alvei FB1, DSM 102038
H. alvei mutant 11, CIP 66.52
H. alvei mutant 2, CIP 66.41
H. alvei mutant 14, CIP 66.48
H. alvei mutant 15, CIP 66.49
H. alvei CIP 66.53
H. alvei CIP A250
H. alvei mutant 7, CIP 66.44
H. alvei mutant 17, CIP 66.50
H. alvei CIP 66.51
H. alvei 1, CIP 106815
H. alvei CIP 66.40
H. alvei mutant 4, CIP 66.42
H. alvei mutant 6, CIP 66.43
H. alvei mutant 8, CIP 66.45
H. alvei mutant 9, CIP 66.46
H. alvei mutant 12, CIP 66.47
H. alvei 5632-72, CIP 104949, ATCC 29926
H. alvei CCUG 497
H. alvei CCUG 6330, NCTC 8106
H. alvei CCUG 28135
H. alvei CCUG 29511
H. alvei CCUG 29513
H. alvei CCUG 29545
H. alvei CCUG 30329
H. alvei CCUG 30687
H. alvei CCUG 30716
H. alvei CCUG 31269
H. alvei CCUG 31437
H. alvei CCUG 32973
H. alvei CCUG 35918
H. alvei CCUG 37955
H. alvei CCUG 41540
H. alvei CCUG 41637
H. alvei CCUG 42414
H. alvei CCUG 45642
H. alvei CCUG 46053
H. alvei CCUG 59411
H. alvei CCUG 59789
H. alvei JCM 24184, ATCC 9760, NCTC 6578
H. alvei CIMB 05-1105, CRBIP17.81

Section

Hafnia alvei WS 10209 is a mesophilic, motile human pathogen that was isolated from raw milk.

motile
human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Hafniaceae*
	Genus	*Hafnia*
	Species	**Hafnia alvei**
	Full Scientific Name (LPSN)	Hafnia alvei Møller 1954 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.98

[Ref.: #69480]	Motility	yes Confidence in %98.036

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9131]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #9131]

Culture medium growth

[Ref.: #9131]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9131]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9131]			growth	30 °C

[Ref.: #9131]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %98.806

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9131]	Sample type/isolated from	raw milk
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Milk
#Host	#Mammals	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9131]	Pathogenicity (human)	yes
[Ref.: #9131]	Pathogenicity (animal)	yes
[Ref.: #9131]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hafnia alvei DSM 30098	GCA_000818795	contig	GenBank	569 tax ID	*
[Ref.: #66792]	Hafnia alvei strain DSM 30098	569.27	wgs	PATRIC	569 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hafnia alvei strain DSM 30098 PATRIC: 569.27
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hafnia alvei strain DSM 30098 PATRIC: 569.27
[Ref.: #69480]	gram-positive	no	98.068	no
[Ref.: #69480]	anaerobic	no	95.872	no
[Ref.: #69480]	halophile	no	92.568	no
[Ref.: #69480]	spore-forming	no	95.245	no
[Ref.: #69480]	glucose-util	yes	94.477	no
[Ref.: #69480]	thermophile	no	98.949	yes
[Ref.: #69480]	flagellated	no	50.887	no
[Ref.: #69480]	motile	yes	89.175	no
[Ref.: #69480]	aerobic	yes	85.77	no
[Ref.: #69480]	glucose-ferment	yes	93.184	no

Availability in culture collections External links

[Ref.: #9131]

Culture collection no.

DSM 30098

[Ref.: #74432]

SI-ID 49691

References

#9131

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30098

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74432

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49691.1 )

* These data were automatically processed and therefore are not curated

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Hafnia alvei strain DSM 30098

Hafnia alvei strain DSM 30098

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