Hafnia alvei (NCTC 6578, ATCC 9760, JCM 24184)

Name: Hafnia alvei (NCTC 6578, ATCC 9760, JCM 24184)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163286

Type strain

Culture col. no. NCTC 6578 ATCC 9760 JCM 24184

NCBI tax ID(s) 569

Special Collections JCM

History R. Sakazaki 287 <-- ATCC 9760 <-- Parke, Davis & Co.; 04414 <-- NCTC 6578 <-- E. F. Gale strain Cadaveris.

Links

Hafnia alvei JCM 24184 is a bacterium of the family Hafniaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 35124

ATCC 9760,NCTC 6578,NCIMB 6578,CECT157,IFO3731,NCDO1518,CCM 2831,CCRC 10906,NCFB 1518,NCCB 46028,LMD 46.28,NCIB 6578,NBRC 3731,BCRC 10906,NCIM 2351,NRRL B-1653,CGMCC 1.2712,CGMCC 1.1009

@ref 20215

Last LPSN update 2026-02-09 11:39:35

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Hafniaceae

Genus Hafnia

Species Hafnia alvei

Full scientific name Hafnia alvei Møller 1954 (Approved Lists 1980)

BacDive ID	Other strains from **Hafnia alvei** (48)	Type strain
4938	H. alvei Type 32011, DSM 30163, ATCC 13337, CIP 57.31, ... (type strain)
130955	H. alvei 1004, DSM 24119
4934	H. alvei 5-5, DSM 15533
4935	H. alvei type 32011, DSM 30097, ATCC 11604
4936	H. alvei WS 10209, DSM 30098
4937	H. alvei 21183, DSM 30101
23928	H. alvei WS 20745, DSM 30099
131728	H. alvei FB1, DSM 102038
134802	H. alvei mutant 11, CIP 66.52
134803	H. alvei mutant 2, CIP 66.41
135651	H. alvei mutant 14, CIP 66.48
135652	H. alvei mutant 15, CIP 66.49
135774	H. alvei CIP 66.53
135815	H. alvei CIP A250
137092	H. alvei mutant 7, CIP 66.44
137118	H. alvei mutant 17, CIP 66.50
137119	H. alvei CIP 66.51
137727	H. alvei 1, CIP 106815
138463	H. alvei CIP 66.40
138919	H. alvei mutant 4, CIP 66.42
138921	H. alvei mutant 6, CIP 66.43
138922	H. alvei mutant 8, CIP 66.45
138923	H. alvei mutant 9, CIP 66.46
138924	H. alvei mutant 12, CIP 66.47
139255	H. alvei 5632-72, CIP 104949, ATCC 29926
141268	H. alvei CCUG 497
141755	H. alvei CCUG 6330, NCTC 8106
145307	H. alvei CCUG 28135
145757	H. alvei CCUG 29511
145758	H. alvei CCUG 29513
145769	H. alvei CCUG 29545
146069	H. alvei CCUG 30329
146238	H. alvei CCUG 30687
146257	H. alvei CCUG 30716
146483	H. alvei CCUG 31269
146560	H. alvei CCUG 31437
147162	H. alvei CCUG 32973
148768	H. alvei CCUG 35918
149558	H. alvei CCUG 37955
150541	H. alvei CCUG 41540
150573	H. alvei CCUG 41637
150811	H. alvei CCUG 42414
152052	H. alvei CCUG 45642
152201	H. alvei CCUG 46053
155828	H. alvei CCUG 59411
155960	H. alvei CCUG 59789
171064	H. alvei CIMB 05-1105, CRBIP17.81
174475	H. alvei 115327, DSM 115327

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.985

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		97
125438		90.135

Enzymes

@ref	Value	Ec
67770	lysine decarboxylase	4.1.1.18

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	52363_E02 assembly for Hafnia alvei NCTC6578	contig	GCA_900451125	569.80	2835273707	569	76.94

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Hafnia alvei gene for 16S rRNA, partial sequence, strain: JCM 24184	AB435601	512		569
124043	Hafnia alvei strain ATCC 9760 16S ribosomal RNA gene, partial sequence.	FJ971884	797		569

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hafnia alvei NCTC6578
NCBI: GCA_900451125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	yes	69.70	no
125439	gram_stain	BacteriaNetⓘ	negative	86.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	87.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hafnia alvei strain NCTC6578
PATRIC: 569.80

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.99	no
125438	anaerobic	anaerobicⓘ	no	95.87	no
125438	spore-forming	spore-formingⓘ	no	90.14	no
125438	aerobic	aerobicⓘ	no	61.77	no
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	flagellated	motile2+ⓘ	yes	74.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative genomic analysis of the Hafnia genus reveals an explicit evolutionary relationship between the species alvei and paralvei and provides insights into pathogenicity.	Yin Z, Yuan C, Du Y, Yang P, Qian C, Wei Y, Zhang S, Huang D, Liu B.	BMC Genomics	10.1186/s12864-019-6123-1	2019
	Biochemical and Molecular Characterization of Obesumbacterium proteus, a Common Contaminant of Brewing Yeasts.	Prest AG, Hammond JR, Stewart GS.	Appl Environ Microbiol	10.1128/aem.60.5.1635-1640.1994	1994
	The genus Hafnia: from soup to nuts.	Janda JM, Abbott SL.	Clin Microbiol Rev	10.1128/cmr.19.1.12-28.2006	2006
	Bacterial characteristics determining the potential host range of bacteriophage T4.	Dawes J.	J Bacteriol	10.1128/jb.127.2.1024-1025.1976	1976
	Test reproducibility of the API (20E), Enterotube, and Pathotec systems.	Holmes B, Willcox WR, Lapage SP, Malnick H.	J Clin Pathol	10.1136/jcp.30.4.381	1977
	Complete Genome Sequence of a Novel Hafnia alvei Bacteriophage.	Bullen A, Grahe A, Kassolis P, Singleton DR.	Microbiol Resour Announc	10.1128/mra.00049-22	2022
	Shotgun Proteomics Analysis, Functional Networks, and Peptide Biomarkers for Seafood-Originating Biogenic-Amine-Producing Bacteria.	Abril AG, Calo-Mata P, Bohme K, Villa TG, Barros-Velazquez J, Pazos M, Carrera M.	Int J Mol Sci	10.3390/ijms24097704	2023
	High-Resolution Comparative and Quantitative Proteomics of Biogenic-Amine-Producing Bacteria and Virulence Factors Present in Seafood.	Abril AG, Calo-Mata P, Villa TG, Bohme K, Barros-Velazquez J, Sanchez-Perez A, Pazos M, Carrera M.	J Agric Food Chem	10.1021/acs.jafc.3c06607	2024
Phylogeny	Identification of Hafnia alvei with the MicroScan WalkAway system.	Rodriguez LA, Vivas J, Gallardo CS, Acosta F, Barbeyto L, Real F.	J Clin Microbiol	10.1128/jcm.37.12.4186-4188.1999	1999

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hafnia alvei (NCTC 6578, ATCC 9760, JCM 24184)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Enzymes

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900451125

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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