Name: Desulfovibrio simplex XVI
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4120

Type strain:

Species: Desulfovibrio simplex

Strain Designation: XVI

Culture col. no.: DSM 4141, JCM 16812

Strain history: DSM 4141 <-- G. Zellner strain XVI.

NCBI tax ID(s): 54565 (species)

SI-ID 47798

DSM 4141, JCM 16812

Special Collections

DSMZ
JCM

Section

Desulfovibrio simplex XVI is an anaerobe bacterium that was isolated from mesophilic, anaerobic whey digestor.

anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Desulfovibrio*
	Species	**Desulfovibrio simplex**
	Full Scientific Name (LPSN)	Desulfovibrio simplex Zellner et al. 1990

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1602]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #1602]

Culture medium growth

[Ref.: #1602]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1602]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1602]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1602]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1602]	Sample type/isolated from	mesophilic, anaerobic whey digestor
[Ref.: #1602]	Geographic location (country and/or sea, region)	Regensburg
[Ref.: #1602]	Country	Germany
[Ref.: #1602]	Country ISO 3 Code	DEU
[Ref.: #1602]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Anaerobic sour whey digester
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	-
#Engineered	#Food production	#Dairy product
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733678 (>99% sequence identity) for Desulfovibrio simplex from Microbeatlas

Aquatic Samples	688
Soil Samples	17
Animal Samples	256
Plant Samples	26
Total Samples	987

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1602]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1602]	Desulfovibrio simplex partial 16S rRNA gene, type strain DSM4141T	FR733678	1539	GenBank ENA	54565 tax ID
[Ref.: #20218]	Desulfovibrio simplex gene for 16S rRNA, partial sequence, strain: JCM 16812	AB603520	1502	GenBank ENA	54565 tax ID	*

[Ref.: #1602]	GC-content	47.5 mol%
[Ref.: #67770]	GC-content	47.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #1602]

Culture collection no.

DSM 4141, JCM 16812

[Ref.: #73623]

SI-ID 47798

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Evidence for a tungsten-stimulated aldehyde dehydrogenase activity of Desulfovibrio simplex that oxidizes aliphatic and aromatic aldehydes with flavins as coenzymes.	Zellner G, Jargon A	Arch Microbiol	10.1007/s002030050525	1997	*

References

#1602

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4141

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73623

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47798.1 )

* These data were automatically processed and therefore are not curated

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