Pseudodesulfovibrio halophilus (DSM 5663, ATCC 51179, SL 8903)

Name: Pseudodesulfovibrio halophilus (DSM 5663, ATCC 51179, SL 8903)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4119

Type strain

Strain Designation SL 8903

Culture col. no. DSM 5663 ATCC 51179 SL 8903

NCBI tax ID(s) 1121450 45629

Special Collections DSMZ

Links

Pseudodesulfovibrio halophilus SL 8903 is an anaerobe, mesophilic prokaryote that was isolated from anoxic benthic microbial mat.

anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 42847

ATCC 51179,DSM 5663

@ref 20215

Last LPSN update 2025-12-16 09:47:44

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Pseudodesulfovibrio

Species Pseudodesulfovibrio halophilus

Full scientific name Pseudodesulfovibrio halophilus (Caumette et al. 1991) Waite et al. 2020

Synonyms (2)

"Salidesulfovibrio halophilus"
Desulfovibrio halophilus

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2150	PSEUDODESULFOVIBRIO MEDIUM (DSMZ Medium 496)		Medium recipe at MediaDive	Name: PSEUDODESULFOVIBRIO MEDIUM (DSMZ Medium 496) Composition: NaCl 69.7907 g/l Na2SO4 2.99102 g/l MgCl2 x 6 H2O 2.99102 g/l Na-L-lactate 2.49252 g/l Na2CO3 0.997009 g/l KCl 0.498505 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299102 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2150	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

2150

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic
#Environmental	#Microbial community
#Condition	#Anoxic (anaerobic)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2150	anoxic benthic microbial mat	Sinai, Solar Lake	Egypt	EGY	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2150	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score
66792	Desulfovibrio halophilus DSM 5663	complete	2571042916	1121450	96.68

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	D.halophilus 16S rRNA gene	X99237	1502		45629
2150	Desulfovibrio halophilus 16S ribosomal RNA gene	U48243	1547		45629

GC content

2150

GC-content (mol%)60.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulfovibrio halophilus DSM 5663
IMG: 2571042916

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	yes	81.70	no
125439	gram_stain	BacteriaNetⓘ	negative	98.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	72.80	no

Literature

Title	Authors	Journal	DOI	Year
Rapid shift in greenhouse forcing of emerging arctic peatlands.	Christensen TR, Scheller J, Scheel M, Rudd DA, Jackowicz-Korczynski M, Mastepanov M, Lopez-Blanco E.	Sci Rep	10.1038/s41598-023-29859-4	2023
Bioinformatics Investigations of Universal Stress Proteins from Mercury-Methylating Desulfovibrionaceae.	Isokpehi RD, McInnis DS, Destefano AM, Johnson GS, Walker AD, Hall YA, Mapp BW, Johnson MO, Simmons SS.	Microorganisms	10.3390/microorganisms9081780	2021
Methanogenic Archaea Can Produce Methane in Deliquescence-Driven Mars Analog Environments.	Maus D, Heinz J, Schirmack J, Airo A, Kounaves SP, Wagner D, Schulze-Makuch D.	Sci Rep	10.1038/s41598-019-56267-4	2020

References

#2150	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5663
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudodesulfovibrio halophilus (DSM 5663, ATCC 51179, SL 8903)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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