Strain identifier

BacDive ID: 4119

Type strain: Yes

Species: Pseudodesulfovibrio halophilus

Strain Designation: SL 8903

Strain history: <- P. Caumette, SL 8903

NCBI tax ID(s): 1121450 (strain), 45629 (species)

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General

@ref: 2150

BacDive-ID: 4119

DSM-Number: 5663

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Pseudodesulfovibrio halophilus SL 8903 is an anaerobe, mesophilic bacterium that was isolated from anoxic benthic microbial mat.

NCBI tax id

NCBI tax idMatching level
45629species
1121450strain

strain history

  • @ref: 2150
  • history: <- P. Caumette, SL 8903

doi: 10.13145/bacdive4119.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Pseudodesulfovibrio
  • species: Pseudodesulfovibrio halophilus
  • full scientific name: Pseudodesulfovibrio halophilus (Caumette et al. 1991) Waite et al. 2020

  • synonyms

    @refsynonym
    20215Salidesulfovibrio halophilus
    20215Desulfovibrio halophilus

@ref: 2150

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Pseudodesulfovibrio

species: Pseudodesulfovibrio halophilus

full scientific name: Pseudodesulfovibrio halophilus (Caumette et al. 1991) Waite et al. 2020

strain designation: SL 8903

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2150
  • name: DESULFOVIBRIO HALOPHILUS MEDIUM (DSMZ Medium 496)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/496
  • composition: Name: PSEUDODESULFOVIBRIO MEDIUM (DSMZ Medium 496) Composition: NaCl 69.7907 g/l Na2SO4 2.99102 g/l MgCl2 x 6 H2O 2.99102 g/l Na-L-lactate 2.49252 g/l Na2CO3 0.997009 g/l KCl 0.498505 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299102 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 2150
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2150
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2150
  • sample type: anoxic benthic microbial mat
  • geographic location: Sinai, Solar Lake
  • country: Egypt
  • origin.country: EGY
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Microbial community#Microbial mat
#Condition#Anoxic (anaerobic)

Safety information

risk assessment

  • @ref: 2150
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218D.halophilus 16S rRNA geneX992371502ena45629
2150Desulfovibrio halophilus 16S ribosomal RNA geneU482431547ena45629

Genome sequences

  • @ref: 66792
  • description: Desulfovibrio halophilus DSM 5663
  • accession: 2571042916
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1121450

GC content

  • @ref: 2150
  • GC-content: 60.7

External links

@ref: 2150

culture collection no.: DSM 5663, ATCC 51179

straininfo link

  • @ref: 73622
  • straininfo: 42847

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2150Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5663)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5663
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
73622Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42847.1StrainInfo: A central database for resolving microbial strain identifiers