Strain identifier
BacDive ID: 4120
Type strain: 
Species: Desulfovibrio simplex
Strain Designation: XVI
Strain history: DSM 4141 <-- G. Zellner strain XVI.
NCBI tax ID(s): 54565 (species)
version 8.1 (current version)
General
@ref: 1602
BacDive-ID: 4120
DSM-Number: 4141
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfovibrio simplex XVI is an anaerobe, mesophilic bacterium that was isolated from mesophilic, anaerobic whey digestor.
NCBI tax id
- NCBI tax id: 54565
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1602 | <- G. Zellner, XVI |
| 67770 | DSM 4141 <-- G. Zellner strain XVI. |
doi: 10.13145/bacdive4120.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Desulfovibrio
- species: Desulfovibrio simplex
- full scientific name: Desulfovibrio simplex Zellner et al. 1990
@ref: 1602
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfovibrio
species: Desulfovibrio simplex
full scientific name: Desulfovibrio simplex Zellner et al. 1990
strain designation: XVI
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1602
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1602 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 1602
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 1602 | mesophilic, anaerobic whey digestor | Regensburg | Germany | DEU | Europe |
| 67770 | Anaerobic sour whey digester |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | |
| #Engineered | #Food production | #Dairy product |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_24656.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_139;96_2534;97_3095;98_18547;99_24656&stattab=map
- Last taxonomy: Desulfovibrio simplex
- 16S sequence: FR733678
- Sequence Identity:
- Total samples: 987
- soil counts: 17
- aquatic counts: 688
- animal counts: 256
- plant counts: 26
Safety information
risk assessment
- @ref: 1602
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Desulfovibrio simplex gene for 16S rRNA, partial sequence, strain: JCM 16812 | AB603520 | 1502 | ena | 54565 |
| 1602 | Desulfovibrio simplex partial 16S rRNA gene, type strain DSM4141T | FR733678 | 1539 | ena | 54565 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 1602 | 47.5 | |
| 67770 | 47.5 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 1602
culture collection no.: DSM 4141, JCM 16812
straininfo link
- @ref: 73623
- straininfo: 47798
literature
- topic: Metabolism
- Pubmed-ID: 9385139
- title: Evidence for a tungsten-stimulated aldehyde dehydrogenase activity of Desulfovibrio simplex that oxidizes aliphatic and aromatic aldehydes with flavins as coenzymes.
- authors: Zellner G, Jargon A
- journal: Arch Microbiol
- DOI: 10.1007/s002030050525
- year: 1997
- mesh: Aldehyde Dehydrogenase/*drug effects/*metabolism, Aldehydes/*metabolism, Desulfovibrio/*enzymology/growth & development/metabolism, Enzyme Activation/drug effects, Flavin Mononucleotide/*metabolism, Flavin-Adenine Dinucleotide/*metabolism, Oxidation-Reduction, Radioisotopes/metabolism, Subcellular Fractions/enzymology, Tungsten/*pharmacology, Tungsten Compounds/metabolism
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1602 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4141) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4141 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73623 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47798.1 | StrainInfo: A central database for resolving microbial strain identifiers |