Name: Paucidesulfovibrio longus DSM 6739
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4121

Type strain:

Species: Paucidesulfovibrio longus

Culture col. no.: DSM 6739, ATCC 51456, SEBR 2582

Strain history: <- M. Magot, SEBR 2582

NCBI tax ID(s): 1121456 (strain), 889 (species)

SI-ID 42996

ATCC 51456, DSM 6739

Special Collections

DSMZ

Section

Paucidesulfovibrio longus DSM 6739 is an anaerobe, Gram-negative bacterium that was isolated from oil-producing well.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Paucidesulfovibrio*
	Species	**Paucidesulfovibrio longus**
	Full Scientific Name (LPSN)	Paucidesulfovibrio longus (Magot et al. 1992) Waite et al. 2020

Synonym

Desulfovibrio longus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.343

[Ref.: #2795]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2795]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #2795]

Culture medium growth

[Ref.: #2795]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2795]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2795]			growth	35 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2795]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2795]	Sample type/isolated from	oil-producing well
[Ref.: #2795]	Geographic location (country and/or sea, region)	Paris basin
[Ref.: #2795]	Country	France
[Ref.: #2795]	Country ISO 3 Code	FRA
[Ref.: #2795]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Oil reservoir

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY359867 (>99% sequence identity) for Desulfovibrio longus subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	14

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2795]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2795]	Desulfovibrio longus strain DSM 6739 16S ribosomal RNA gene, partial sequence	AY359867	1416	GenBank ENA	889 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paucidesulfovibrio longus DSM 6739	GCA_000420485	scaffold	GenBank ENA	1121456 tax ID	*
[Ref.: #66792]	Desulfovibrio longus DSM 6739	1121456.3	wgs	PATRIC	1121456 tax ID	*
[Ref.: #66792]	Desulfovibrio longus DSM 6739	2523533522	draft	JGI IMG/M	1121456 tax ID	*

[Ref.: #2795]

GC-content

62.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio longus DSM 6739 DSM 6739 NCBI: GCA_000420485.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio longus DSM 6739 DSM 6739 NCBI: GCA_000420485.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.343	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	78.72	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	82.841	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.023	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	84.754	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.079	no

Availability in culture collections External links

[Ref.: #2795]

Culture collection no.

DSM 6739, ATCC 51456, SEBR 2582

[Ref.: #73624]

SI-ID 42996

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Synthesis, characterization, biocide and toxicological activities of di-n-butyl- and diphenyl-tin(IV)-salicyliden-beta-amino alcohol derivatives.	Zamudio-Rivera LS, George-Tellez R, Lopez-Mendoza G, Morales-Pacheco A, Flores E, Hopfl H, Barba V, Fernandez FJ, Cabirol N, Beltran HI	Inorg Chem	10.1021/ic048628o	2005	*
Phylogeny	Desulfovibrio longus sp. nov., a sulfate-reducing bacterium isolated from an oil-producing well.	Magot M, Caumette P, Desperrier JM, Matheron R, Dauga C, Grimont F, Carreau L	Int J Syst Bacteriol	10.1099/00207713-42-3-398	1992	*

References

#2795

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6739

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73624

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42996.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paucidesulfovibrio longus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Desulfovibrio longus DSM 6739 DSM 6739

Desulfovibrio longus DSM 6739 DSM 6739

Change proposal

Change proposal