Strain identifier
BacDive ID: 4121
Type strain: 
Species: Paucidesulfovibrio longus
Strain history: <- M. Magot, SEBR 2582
NCBI tax ID(s): 1121456 (strain), 889 (species)
version 9.1 (current version)
General
@ref: 2795
BacDive-ID: 4121
DSM-Number: 6739
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative
description: Paucidesulfovibrio longus DSM 6739 is an anaerobe, Gram-negative bacterium that was isolated from oil-producing well.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121456 | strain |
| 889 | species |
strain history
- @ref: 2795
- history: <- M. Magot, SEBR 2582
doi: 10.13145/bacdive4121.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Paucidesulfovibrio
- species: Paucidesulfovibrio longus
- full scientific name: Paucidesulfovibrio longus (Magot et al. 1992) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Desulfovibrio longus
@ref: 2795
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Paucidesulfovibrio
species: Paucidesulfovibrio longus
full scientific name: Paucidesulfovibrio longus (Magot et al. 1992) Waite et al. 2020
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 95.343
colony morphology
- @ref: 2795
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 2795
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 2795
- growth: positive
- type: growth
- temperature: 35
Physiology and metabolism
oxygen tolerance
- @ref: 2795
- oxygen tolerance: anaerobe
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 2795
- sample type: oil-producing well
- geographic location: Paris basin
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Engineered product |
| #Engineered | #Industrial | #Oil reservoir |
taxonmaps
- @ref: 69479
- File name: preview.99_140485.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_428;96_1980;97_2381;98_93368;99_140485&stattab=map
- Last taxonomy: Desulfovibrio longus subclade
- 16S sequence: AY359867
- Sequence Identity:
- Total samples: 14
- soil counts: 2
- aquatic counts: 12
Safety information
risk assessment
- @ref: 2795
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2795
- description: Desulfovibrio longus strain DSM 6739 16S ribosomal RNA gene, partial sequence
- accession: AY359867
- length: 1416
- database: nuccore
- NCBI tax ID: 889
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paucidesulfovibrio longus DSM 6739 | GCA_000420485 | scaffold | ncbi | 1121456 |
| 66792 | Desulfovibrio longus DSM 6739 | 1121456.3 | wgs | patric | 1121456 |
| 66792 | Desulfovibrio longus DSM 6739 | 2523533522 | draft | img | 1121456 |
GC content
- @ref: 2795
- GC-content: 62.3
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 95.343 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 78.72 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 82.841 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.023 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 84.754 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 80.079 | no |
External links
@ref: 2795
culture collection no.: DSM 6739, ATCC 51456, SEBR 2582
straininfo link
- @ref: 73624
- straininfo: 42996
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 1380287 | Desulfovibrio longus sp. nov., a sulfate-reducing bacterium isolated from an oil-producing well. | Magot M, Caumette P, Desperrier JM, Matheron R, Dauga C, Grimont F, Carreau L | Int J Syst Bacteriol | 10.1099/00207713-42-3-398 | 1992 | Base Composition, Base Sequence, DNA, Bacterial/chemistry, Desulfovibrio/*classification/cytology/isolation & purification/physiology, Microscopy, Electron, Molecular Sequence Data, *Petroleum, Phylogeny, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/*chemistry, Sequence Homology, Nucleic Acid, Water Microbiology | Genetics |
| Pathogenicity | 16022535 | Synthesis, characterization, biocide and toxicological activities of di-n-butyl- and diphenyl-tin(IV)-salicyliden-beta-amino alcohol derivatives. | Zamudio-Rivera LS, George-Tellez R, Lopez-Mendoza G, Morales-Pacheco A, Flores E, Hopfl H, Barba V, Fernandez FJ, Cabirol N, Beltran HI | Inorg Chem | 10.1021/ic048628o | 2005 | Amino Alcohols/chemical synthesis/*chemistry, Crystallography, X-Ray, Microbial Sensitivity Tests, Models, Molecular, Molecular Conformation, *Organometallic Compounds/chemical synthesis/chemistry/toxicity, Photobacterium/drug effects, Structure-Activity Relationship, Tin/*chemistry |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2795 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6739) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6739 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 73624 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42996.1 | StrainInfo: A central database for resolving microbial strain identifiers |