Corynebacterium aquatimens (DSM 45632, CCUG 61574, JCM 19112)

Name: Corynebacterium aquatimens (DSM 45632, CCUG 61574, JCM 19112)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3244

Type strain

Strain Designation clone 1-1491, L-2012475

Culture col. no. DSM 45632 CCUG 61574 JCM 19112 IMMIB L-2012475 No.1 clone 1-1491 3 more

NCBI tax ID(s) 1190508

Special Collections DSMZ CCUG JCM

History DSMZ <- A. F. Yassin, Univ. Bonn, Germany; IMMIB L-2475 JCM <-- CCUG 61574 <-- A. F. Yassin IMMIB L-2475 <-- M. Aravena-Román.

Links

Corynebacterium aquatimens clone 1-1491 is a microaerophile bacterium that was isolated from blood culture of a man with septicemia.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401782

JCM 19112,DSM 45632,CCUG 61574

@ref 20215

Last LPSN update 2026-05-29 08:25:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium aquatimens

Full scientific name Corynebacterium aquatimens Aravena-Román et al. 2012

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	93.5
125438	92.111	positive
125439	95.804

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17933	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17933	positive	growth	37
62658	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62658	microaerophile
125439	facultative anaerobe	90.943

Spore formation

@ref	Spore formation	Confidence
125439		95.048

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Infection	#Patient	-
#Infection	#Patient	#Blood culture

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
17933	blood culture of a man with septicemia	Homo sapiens		City of Perth	Australia	AUS	Australia and Oceania
62658	Human blood	Homo sapiens	2011-05-01	Perth	Australia	AUS	Australia and Oceania
67770	Blood cultures (30-year-old man with septicemia)	Homo sapiens		Perth, Western Australia	Australia	AUS	Australia and Oceania

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
17933	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3040839v1 assembly for Corynebacterium aquatimens DSM 45632	complete	GCA_030408395	1190508.8	8049417764	1190508	97.83
66792	ASM1575212v1 assembly for Corynebacterium aquatimens DSM 45632	contig	GCA_015752125	1190508.3	2880529280	1190508	77.74
124043	ASM4265224v1 assembly for Corynebacterium aquatimens CCUG 61574	scaffold	GCA_042652245			1190508	64.15
124043	ASM5076881v1 assembly for Corynebacterium aquatimens CCUG 61574	contig	GCA_050768815			1190508	62.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17933	Corynebacterium aquatimens partial 16S rRNA gene, type strain IMMIB L-2475T, clone 1-1491	HE575405	1491		1190508

GC content

@ref	GC-content (mol%)	Method
17933	60.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3040839v1 assembly for Corynebacterium aquatimens DSM 45632
NCBI: GCA_030408395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.94	no
125439	gram_stain	BacteriaNetⓘ	positive	68.65	no
125439	motility	BacteriaNetⓘ	no	95.80	no
125439	spore_formation	BacteriaNetⓘ	no	95.05	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium aquatimens strain DSM 45632
PATRIC: 1190508.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.11	no
125438	anaerobic	anaerobicⓘ	no	92.73	no
125438	spore-forming	spore-formingⓘ	no	78.90	no
125438	aerobic	aerobicⓘ	no	56.26	yes
125438	thermophilic	thermophileⓘ	no	92.48	no
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Phylogenomic Reappraisal of Fatty Acid Biosynthesis, Mycolic Acid Biosynthesis and Clinical Relevance Among Members of the Genus Corynebacterium.	Dover LG, Thompson AR, Sutcliffe IC, Sangal V.	Front Microbiol	10.3389/fmicb.2021.802532	2021
	Antagonistic Effects of Corynebacterium pseudodiphtheriticum 090104 on Respiratory Pathogens.	Ortiz Moyano R, Dentice Maidana S, Imamura Y, Elean M, Namai F, Suda Y, Nishiyama K, Melnikov V, Kitazawa H, Villena J.	Microorganisms	10.3390/microorganisms12071295	2024
	Corynebacterium genitalium sp. nov., nom. rev. and Corynebacterium pseudogenitalium sp. nov., nom. rev., two old species of the genus Corynebacterium described from clinical and environmental samples.	Jaen-Luchoro D, Al-Shaer S, Pineiro-Iglesias B, Gonzales-Siles L, Cardew S, Jensie-Markopolous S, Ohlen M, Inganas E, Neumann-Schaal M, Wolf J, Moore ERB.	Res Microbiol	10.1016/j.resmic.2022.103987	2023
Phylogeny	Corynebacterium aquatimens sp. nov., a lipophilic Corynebacterium isolated from blood cultures of a patient with bacteremia.	Aravena-Roman M, Sproer C, Siering C, Inglis T, Schumann P, Yassin AF	Syst Appl Microbiol	10.1016/j.syapm.2012.06.008	2012

References

#17933	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45632
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62658	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61574
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Corynebacterium aquatimens (DSM 45632, CCUG 61574, JCM 19112)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030408395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media