Strain identifier

BacDive ID: 3244

Type strain: Yes

Species: Corynebacterium aquatimens

Strain Designation: clone 1-1491, L-2012475

Strain history: CCUG 61574 <-- A. F. Yassin IMMIB L-2475 <-- M. Aravena-Román.

NCBI tax ID(s): 1190508 (species)

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General

@ref: 17933

BacDive-ID: 3244

DSM-Number: 45632

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen

description: Corynebacterium aquatimens clone 1-1491 is a microaerophile, mesophilic human pathogen that was isolated from blood culture of a man with septicemia.

NCBI tax id

  • NCBI tax id: 1190508
  • Matching level: species

strain history

@refhistory
17933<- A. F. Yassin, Univ. Bonn, Germany; IMMIB L-2475
67770CCUG 61574 <-- A. F. Yassin IMMIB L-2475 <-- M. Aravena-Román.

doi: 10.13145/bacdive3244.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium aquatimens
  • full scientific name: Corynebacterium aquatimens Aravena-Román et al. 2012

@ref: 17933

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium aquatimens

full scientific name: Corynebacterium aquatimens Aravena-Román et al. 2012

strain designation: clone 1-1491, L-2012475

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 17933
  • name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535a
  • composition: Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17933positivegrowth37mesophilic
62658positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62658
  • oxygen tolerance: microaerophile

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
17933blood culture of a man with septicemiaCity of PerthAustraliaAUSAustralia and Oceania
62658Human bloodPerthAustraliaAUSAustralia and Oceania2011-05-01
67770Blood cultures (30-year-old man with septicemia)Perth, Western AustraliaAustraliaAUSAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Patient
#Infection#Patient#Blood culture

Safety information

risk assessment

  • @ref: 17933
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17933
  • description: Corynebacterium aquatimens partial 16S rRNA gene, type strain IMMIB L-2475T, clone 1-1491
  • accession: HE575405
  • length: 1491
  • database: ena
  • NCBI tax ID: 1190508

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium aquatimens DSM 45632GCA_015752125contigncbi1190508
66792Corynebacterium aquatimens strain DSM 456321190508.3wgspatric1190508
66792Corynebacterium aquatimens DSM 456322880529280draftimg1190508

GC content

  • @ref: 17933
  • GC-content: 60.8
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.49no
gram-positiveyes95.621no
anaerobicno98.791yes
aerobicno72.84no
halophileyes65.168no
spore-formingno92.782no
flagellatedno97.802no
glucose-utilyes77.694no
thermophileno91.153yes
glucose-fermentno79.432no

External links

@ref: 17933

culture collection no.: DSM 45632, CCUG 61574, JCM 19112, IMMIB L-2012475 No.1, IMMIB L-2475, IMMIB L-2012475 No.1, clone 1-1491

straininfo link

  • @ref: 72757
  • straininfo: 401782

literature

  • topic: Phylogeny
  • Pubmed-ID: 22858450
  • title: Corynebacterium aquatimens sp. nov., a lipophilic Corynebacterium isolated from blood cultures of a patient with bacteremia.
  • authors: Aravena-Roman M, Sproer C, Siering C, Inglis T, Schumann P, Yassin AF
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2012.06.008
  • year: 2012
  • mesh: Adult, Bacteremia/blood/*microbiology, Bacterial Proteins/genetics, Base Composition, Corynebacterium/chemistry/classification/genetics/*isolation & purification, Corynebacterium Infections/blood/*microbiology, DNA, Bacterial/genetics, Humans, Male, Molecular Sequence Data, Mycolic Acids/chemistry, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Ribotyping, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitle
17933Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45632)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45632
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
62658Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 61574)https://www.ccug.se/strain?id=61574
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
72757Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401782.1StrainInfo: A central database for resolving microbial strain identifiers