Corynebacterium epidermidicanis (DSM 45586, CCUG 60915, LMG 26322)

Name: Corynebacterium epidermidicanis (DSM 45586, CCUG 60915, LMG 26322)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3243

Type strain

Strain Designation 410

Culture col. no. DSM 45586 CCUG 60915 LMG 26322 410 JCM 18955

NCBI tax ID(s) 1050174

Special Collections DSMZ CCUG JCM Literature strains

History <- H.-J. Busse, Universität Wien; 410 <- A. Knoll LMG 26322 <-- H.-J. Busse 410 <-- A. Knoll.

Links

Corynebacterium epidermidicanis 410 is a facultative aerobe, Gram-positive, ovoid-shaped bacterium that was isolated from skin of a dog suffering from pruritus.

Gram-positive ovoid-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376202

LMG 26322,CCUG 60915,DSM 45586,JCM 18955

@ref 20215

Last LPSN update 2026-02-09 11:18:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium epidermidicanis

Full scientific name Corynebacterium epidermidicanis Frischmann et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
30435	positive	ovoid-shaped
125438			92.5
125438	positive		93
125439			94.1
125439	positive		91.6

Pigmentation

30435

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17732	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17732	positive	growth	37
30435	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30435	facultative aerobe
125439	microaerophile	97.1

Spore formation

@ref	Spore formation	Confidence
125439		93.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30435	30089 ChEBI	acetate	+	carbon source
30435	35391 ChEBI	aspartate	+	carbon source
30435	27570 ChEBI	histidine	+	carbon source
30435	17272 ChEBI	propionate	+	carbon source
30435	17822 ChEBI	serine	+	carbon source
30435	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30435	alkaline phosphatase	+	3.1.3.1
30435	catalase	+	1.11.1.6
30435	pyrazinamidase	+	3.5.1.B15

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	methylglyoxal degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	starch degradation	100	10 of 10
66794	vitamin K metabolism	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	ethanol fermentation	100	2 of 2
66794	hydrogen production	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	denitrification	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	phenylalanine metabolism	92.31	12 of 13
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	propanol degradation	85.71	6 of 7
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	vitamin B12 metabolism	82.35	28 of 34
66794	pentose phosphate pathway	81.82	9 of 11
66794	metabolism of disaccharids	81.82	9 of 11
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	leucine metabolism	76.92	10 of 13
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	NAD metabolism	72.22	13 of 18
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	purine metabolism	70.21	66 of 94
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	tryptophan metabolism	68.42	26 of 38
66794	enterobactin biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	sulfate reduction	61.54	8 of 13
66794	oxidative phosphorylation	61.54	56 of 91
66794	lipid metabolism	58.06	18 of 31
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	glutathione metabolism	57.14	8 of 14
66794	lysine metabolism	57.14	24 of 42
66794	d-mannose degradation	55.56	5 of 9
66794	urea cycle	53.85	7 of 13
66794	methionine metabolism	53.85	14 of 26
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	butanoate fermentation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	phenol degradation	50	10 of 20
66794	cysteine metabolism	50	9 of 18
66794	arginine metabolism	50	12 of 24
66794	cholesterol biosynthesis	45.45	5 of 11
66794	carotenoid biosynthesis	45.45	10 of 22
66794	molybdenum cofactor biosynthesis	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine metabolism	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	vitamin B6 metabolism	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	nitrate assimilation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	Entner Doudoroff pathway	30	3 of 10
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	degradation of sugar alcohols	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	degradation of pentoses	25	7 of 28
66794	arachidonic acid metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Organ	#Skin, Nail, Hair

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17732	skin of a dog suffering from pruritus	Vienna	Austria	AUT	Europe
67770	Skin of a dog suffering from pruritus		Austria	AUT	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
17732	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM102102v1 assembly for Corynebacterium epidermidicanis DSM 45586	complete	GCA_001021025	1050174.4	2615840652	1050174	99.47

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17732	Corynebacterium epidermidicanis partial 16S rRNA gene, type strain DSM 45586T, isolate 410	FR874223	1439		1050174

GC content

@ref	GC-content (mol%)	Method
67770	58.06	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium epidermidicanis strain DSM 45586
PATRIC: 1050174.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	97.10	no
125439	gram_stain	BacteriaNetⓘ	positive	91.60	no
125439	motility	BacteriaNetⓘ	no	94.10	no
125439	spore_formation	BacteriaNetⓘ	no	93.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium epidermidicanis DSM 45586
NCBI: GCA_001021025.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.00	no
125438	anaerobic	anaerobicⓘ	no	92.09	no
125438	aerobic	aerobicⓘ	no	52.34	yes
125438	spore-forming	spore-formingⓘ	no	78.96	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	92.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Phylogenomic Characterization of a Novel Corynebacterium Species Associated with Fatal Diphtheritic Stomatitis in Endangered Yellow-Eyed Penguins.	Saunderson SC, Nouioui I, Midwinter AC, Wilkinson DA, Young MJ, McInnes KM, Watts J, Sangal V.	mSystems	10.1128/msystems.00320-21	2021
	Phylogenomic Reappraisal of Fatty Acid Biosynthesis, Mycolic Acid Biosynthesis and Clinical Relevance Among Members of the Genus Corynebacterium.	Dover LG, Thompson AR, Sutcliffe IC, Sangal V.	Front Microbiol	10.3389/fmicb.2021.802532	2021
Metabolism	MsrR is a thiol-based oxidation-sensing regulator of the XRE family that modulates C. glutamicum oxidative stress resistance.	Si M, Chen C, Zhong J, Li X, Liu Y, Su T, Yang G.	Microb Cell Fact	10.1186/s12934-020-01444-8	2020
Genetics	Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.	Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M.	F1000Res	10.12688/f1000research.9416.3	2016
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Genetics	Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus.	Ruckert C, Eimer J, Winkler A, Tauch A	Genome Announc	10.1128/genomeA.00959-15	2015
	Corynebacterium mendelii sp. nov., a novel bacterium isolated from Adélie penguin oral cavity.	Koublova V, Sedlar K, Sedlacek I, Musilova J, Stankova E, Kralova S, Koudelkova S, Krsek D, Svec P.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006244	2024
Phylogeny	Classification of three corynebacterial strains isolated from the Northern Bald Ibis (Geronticus eremita): proposal of Corynebacterium choanae sp. nov., Corynebacterium pseudopelargi sp. nov., and Corynebacterium gerontici sp. nov.	Busse HJ, Kleinhagauer T, Glaeser SP, Spergser J, Kampfer P, Ruckert C.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003580	2019
Phylogeny	Corynebacterium epidermidicanis sp. nov., isolated from skin of a dog.	Frischmann A, Knoll A, Hilbert F, Zasada AA, Kampfer P, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.036061-0	2011

References

#17732	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45586
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26771	IJSEM 2194 2012 ( DOI 10.1099/ijs.0.036061-0 , PubMed 22081710 )
#30435	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26771
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Corynebacterium epidermidicanis (DSM 45586, CCUG 60915, LMG 26322)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001021025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media