Name: Corynebacterium deserti GIMN1.010
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3242

Type strain:

Species: Corynebacterium deserti

Strain Designation: GIMN1.010

Culture col. no.: DSM 45689, CCTCC AB 2010341, NRRL B-59552

Strain history: <- J. Sweezy, NRRL; NRRL B-59552

NCBI tax ID(s): 1408191 (species)

SI-ID 402439

DSM 45689

Special Collections

DSMZ

Section

Corynebacterium deserti GIMN1.010 is a Gram-positive bacterium that was isolated from desert sand.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium deserti**
	Full Scientific Name (LPSN)	Corynebacterium deserti Zhou et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %91

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18077]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #18077]

Culture medium growth

[Ref.: #18077]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18077]

Culture medium composition

expand / minimize

[Ref.: #18077]

Culture medium

TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)

[Ref.: #18077]

Culture medium growth

[Ref.: #18077]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18077]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18077]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18077]	Sample type/isolated from	desert sand
[Ref.: #18077]	Geographic location (country and/or sea, region)	western China
[Ref.: #18077]	Country	China
[Ref.: #18077]	Country ISO 3 Code	CHN
[Ref.: #18077]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Sandy
#Condition	#Xerophilic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18077]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18077]	Corynebacterium deserti strain GIMN1.010 16S ribosomal RNA gene, partial sequence	HQ612241	1478	GenBank ENA	931089 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium deserti GIMN1.010	GCA_001277995	complete	GenBank ENA	931089 tax ID	*
[Ref.: #66792]	Corynebacterium deserti GIMN1.010	931089.4	complete	PATRIC	931089 tax ID	*
[Ref.: #66792]	Corynebacterium deserti GIMN1.010	931089.7	plasmid	PATRIC	931089 tax ID	*
[Ref.: #66792]	Corynebacterium deserti GIMN1.010	931089.6	plasmid	PATRIC	931089 tax ID	*
[Ref.: #66792]	Corynebacterium deserti GIMN1.010	2654588031	complete	JGI IMG/M	931089 tax ID	*

[Ref.: #18077]

GC-content

61.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium deserti GIMN1.010 PATRIC: 931089.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium deserti GIMN1.010 GIMN1.010 NCBI: GCA_001277995.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.043	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.147	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.392	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	77.899	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #18077]

Culture collection no.

DSM 45689, CCTCC AB 2010341, NRRL B-59552

[Ref.: #72755]

SI-ID 402439

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium defluvii sp. nov., isolated from Sewage.	Yu QL, Yan ZF, He X, Tian FH, Jia CW, Li CT	J Microbiol	10.1007/s12275-017-6592-3	2017	*
Phylogeny	Corynebacterium crudilactis sp. nov., isolated from raw cow's milk.	Zimmermann J, Ruckert C, Kalinowski J, Lipski A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001509	2016	*
Phylogeny	Corynebacterium deserti sp. nov., isolated from desert sand.	Zhou Z, Yuan M, Tang R, Chen M, Lin M, Zhang W	Int J Syst Evol Microbiol	10.1099/ijs.0.030429-0	2011	*

References

#18077

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45689

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72755

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402439.1 )

* These data were automatically processed and therefore are not curated

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Corynebacterium deserti GIMN1.010

Corynebacterium deserti GIMN1.010 GIMN1.010

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