Corynebacterium deserti (DSM 45689, CCTCC AB 2010341, NRRL B-59552)

Name: Corynebacterium deserti (DSM 45689, CCTCC AB 2010341, NRRL B-59552)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3242

Type strain

Strain Designation GIMN1.010

Culture col. no. DSM 45689 CCTCC AB 2010341 NRRL B-59552 GIMN1.010

NCBI tax ID(s) 1408191

Special Collections DSMZ

History DSMZ <- J. Sweezy, NRRL; NRRL B-59552

Links

Corynebacterium deserti GIMN1.010 is a bacterium that was isolated from desert sand.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402439

DSM 45689

@ref 20215

Last LPSN update 2026-05-29 08:25:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium deserti

Full scientific name Corynebacterium deserti Zhou et al. 2012

Morphology

Cell morphology

@ref	Motility	Confidence
125438		91
125439		95.6

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18077	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
18077	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18077	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	91.238

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Sandy
#Condition	#Xerophilic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18077	desert sand	western China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18077	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM127799v1 assembly for Corynebacterium deserti GIMN1.010	complete	GCA_001277995	2654588031	931089	99.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18077	Corynebacterium deserti strain GIMN1.010 16S ribosomal RNA gene, partial sequence	HQ612241	1478		931089

GC content

@ref	GC-content (mol%)	Method
18077	61.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM127799v1 assembly for Corynebacterium deserti GIMN1.010
NCBI: GCA_001277995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.24	no
125439	gram_stain	BacteriaNetⓘ	positive	71.78	no
125439	motility	BacteriaNetⓘ	no	95.60	no
125439	spore_formation	BacteriaNetⓘ	no	73.75	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium deserti GIMN1.010 GIMN1.010
NCBI: GCA_001277995.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.04	no
125438	anaerobic	anaerobicⓘ	no	95.15	no
125438	aerobic	aerobicⓘ	yes	76.39	no
125438	spore-forming	spore-formingⓘ	no	77.90	no
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium defluvii sp. nov., isolated from Sewage.	Yu QL, Yan ZF, He X, Tian FH, Jia CW, Li CT	J Microbiol	10.1007/s12275-017-6592-3	2017
Phylogeny	Corynebacterium crudilactis sp. nov., isolated from raw cow's milk.	Zimmermann J, Ruckert C, Kalinowski J, Lipski A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001509	2016
Phylogeny	Corynebacterium deserti sp. nov., isolated from desert sand.	Zhou Z, Yuan M, Tang R, Chen M, Lin M, Zhang W	Int J Syst Evol Microbiol	10.1099/ijs.0.030429-0	2011

References

#18077	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45689
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium deserti (DSM 45689, CCTCC AB 2010341, NRRL B-59552)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001277995

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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