Corynebacterium otitidis (CCUG 32254, DSM 8821, ATCC 51513)

Name: Corynebacterium otitidis (CCUG 32254, DSM 8821, ATCC 51513)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3245

Type strain

Strain Designation GF 234/92

Culture col. no. CCUG 32254 DSM 8821 ATCC 51513 GF 234/92 NBRC 106139 5 more

NCBI tax ID(s) 883169 29321

Special Collections DSMZ CCUG JCM CIP Wink compendium Literature strains

Links

Corynebacterium otitidis GF 234/92 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from middle ear fluid from otitis media patient.

Gram-positive microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13111

LMG 19071,ATCC 51513,CIP 104075,DSM 8821,CCUG 32254,CCM 4568,JCM 12146,NBRC 106139

@ref 20215

Last LPSN update 2025-12-16 09:47:30

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium otitidis

Full scientific name Corynebacterium otitidis (Funke et al. 1994) Baek et al. 2018

Synonyms (1)

Turicella otitidis

BacDive ID	Other strains from **Corynebacterium otitidis** (11)	Type strain
136247	C. otitidis Florian, CIP 103957, ATCC 51308
136270	C. otitidis GF 272/92, CIP 104076, ATCC 51514
137257	C. otitidis GF 388/92, CIP 104077
137834	C. otitidis 713.84, CIP 101111
139207	C. otitidis CIP 101723
144579	C. otitidis CCUG 25801
146877	C. otitidis CCUG 32344
152161	C. otitidis CCUG 45934
152162	C. otitidis CCUG 45935
153068	C. otitidis CCUG 48414
174972	C. otitidis 115101, DSM 115101

Morphology

Cell morphology

@ref	Gram stain	Motility
23103	positive
121468	positive
125439	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
20211	Ivory (1014)	10-14 days	ISP 2
20211	Ivory (1014)	10-14 days	ISP 3
20211		10-14 days	ISP 4
20211		10-14 days	ISP 5
20211		10-14 days	ISP 6
20211		10-14 days	ISP 7
23103	creamy	2 days	sheep blood agar
50933		3 days
121468

Multicellular morphology

@ref	Forms multicellular complex	Medium name
20211		ISP 2
20211		ISP 3
20211		ISP 4
20211		ISP 5
20211		ISP 6
20211		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3416	BHI/1 MEDIUM (DSMZ Medium 216)	Medium recipe at MediaDive	Name: BHI/1 MEDIUM (DSMZ Medium 216) Composition: Brain heart infusion 37.0 g/l Yeast extract 2.0 g/l Distilled water
20211	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20211	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20211	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20211	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20211	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20211	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
23103	Columbia agar base (Becton Dickinson, Cockeysville, Md.)		supplemented with 5% sheep blood
23103	sheep blood agar
36396	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
3416	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
3416	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
121468	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3416	positive	growth	37	mesophilic
20211	positive	optimum	37	mesophilic
36396	positive	growth	37	mesophilic
50933	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
121468	negative	growth	30
121468	negative	growth	15
121468	negative	growth	10
121468	positive	growth	37	mesophilic
121468	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
50933	microaerophile
121468	obligate aerobe
125439	facultative anaerobe

Spore formation

23103

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
20211	NaCl	positive	maximum	7.5 %
23103	NaCl	positive	growth	6.5 %
121468	NaCl		growth	0 %
121468	NaCl		growth	2 %
121468	NaCl		growth	4 %
121468	NaCl		growth	6 %
121468	NaCl		growth	8 %

Murein

@ref	Murein short key	Type
3416	A31	A1gamma m-Dpm-direct

Observation

67770

Observationquinones: MK-10, MK-11

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
20211	22599 ChEBI	arabinose	-
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
20211	62968 ChEBI	cellulose	-
121468	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
23103	17634 ChEBI	D-glucose	-	builds acid from
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
23103	4853 ChEBI	esculin	-	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
121468	4853 ChEBI	esculin	-	hydrolysis
20211	28757 ChEBI	fructose	-
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
20211	17234 ChEBI	glucose	-
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	+	hydrolysis	from API rID32STR
121468	606565 ChEBI	hippurate	+	hydrolysis
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68381	17306 ChEBI	maltose	-	builds acid from	from API rID32STR
20211	29864 ChEBI	mannitol	-
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
20211	17268 ChEBI	myo-inositol	-
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
23103	17632 ChEBI	nitrate	-	reduction
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
121468	17632 ChEBI	nitrate	-	reduction
121468	17632 ChEBI	nitrate	-	respiration
121468	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
20211	16634 ChEBI	raffinose	-
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
20211	26546 ChEBI	rhamnose	-
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
20211	17992 ChEBI	sucrose	-
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68381	27082 ChEBI	trehalose	-	builds acid from	from API rID32STR
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
23103	16199 ChEBI	urea	-	hydrolysis
68381	16199 ChEBI	urea	+	hydrolysis	from API rID32STR
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
20211	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68381	15688 ChEBI	acetoin	from API rID32STR
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
23103	35581 ChEBI	indole
121468	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	-	from API rID32STR
121468	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-	from API 20E
121468	17234 ChEBI	glucose
68368	35581 ChEBI	indole		from API 20E

Enzymes

@ref	Value	Activity	Ec
23103	acid phosphatase	+	3.1.3.2
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
121468	alcohol dehydrogenase	-	1.1.1.1
23103	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121468	amylase	-
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
121468	beta-galactosidase	-	3.2.1.23
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
121468	caseinase	-	3.4.21.50
23103	catalase	+	1.11.1.6
121468	catalase	+	1.11.1.6
68379	catalase	+	1.11.1.6	from API Coryne
23103	cytochrome oxidase	-	1.9.3.1
121468	DNase	-
68382	esterase lipase (C 8)	+		from API zym
121468	gamma-glutamyltransferase	-	2.3.2.2
121468	gelatinase	-
68379	gelatinase	-		from API Coryne
68368	gelatinase	-		from API 20E
68381	glycyl tryptophan arylamidase	+		from API rID32STR
121468	lecithinase	+/-
23103	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
121468	lipase	-
68382	lipase (C 14)	-		from API zym
121468	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121468	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
121468	oxidase	-
121468	phenylalanine ammonia-lyase	-	4.3.1.24
121468	protease	-
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68382	trypsin	-	3.4.21.4	from API zym
121468	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
121468	tween esterase	-
121468	urease	-	3.5.1.5
68381	urease	+	3.5.1.5	from API rID32STR
68368	urease	+	3.5.1.5	from API 20E

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	phenylmercury acetate degradation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	vitamin B1 metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	vitamin K metabolism	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	NAD metabolism	72.22	13 of 18
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	purine metabolism	70.21	66 of 94
66794	phenylalanine metabolism	69.23	9 of 13
66794	pyrimidine metabolism	68.89	31 of 45
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	histidine metabolism	65.52	19 of 29
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	citric acid cycle	64.29	9 of 14
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	methylglyoxal degradation	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	oxidative phosphorylation	58.24	53 of 91
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	alanine metabolism	55.17	16 of 29
66794	lipid metabolism	54.84	17 of 31
66794	arginine metabolism	54.17	13 of 24
66794	tryptophan metabolism	52.63	20 of 38
66794	butanoate fermentation	50	2 of 4
66794	propionate fermentation	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	Entner Doudoroff pathway	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	lysine metabolism	50	21 of 42
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	suberin monomers biosynthesis	50	1 of 2
66794	methionine metabolism	50	13 of 26
66794	non-pathway related	47.37	18 of 38
66794	urea cycle	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	propanol degradation	42.86	3 of 7
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	carotenoid biosynthesis	36.36	8 of 22
66794	tyrosine metabolism	35.71	5 of 14
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	sulfoquinovose degradation	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	ubiquinone biosynthesis	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	degradation of sugar alcohols	25	4 of 16
66794	glycogen biosynthesis	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	CMP-KDO biosynthesis	25	1 of 4
66794	vitamin B12 metabolism	20.59	7 of 34

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
20211	-	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20211	-	-	-	+	-	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.
3416	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
50933	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20211	not determinedn.d.	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-
50933	-	+	-	+	-	+	-	+	-	-	-	+	-	-	-	-	-	-	-	-
121468	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
50933	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease
#Infection	#Patient
#Host Body-Site	#Organ
#Host Body Product	#Fluids

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
3416	middle ear fluid from otitis media patient	Zürich	Switzerland	CHE	Europe	47.3687	8.5392 47.3687/8.5392
50933	Human otitis media	Zürich	Switzerland	CHE	Europe
67770	Middle ear fluid from a patient with otitis media treated	Zurich	Switzerland	CHE	Europe
121468	Human, Middle ear effusion	Zurich	Switzerland	CHE	Europe

Taxonmaps

69479

Global distribution of 16S sequence X73976 (>99% sequence identity) for Corynebacterium otitidis subclade from Microbeatlas

Aquatic Samples	1368
Soil Samples	786
Animal Samples	10139
Plant Samples	607
Total Samples	12900

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3416	2	Risk group (German classification) According to TRBA 466
20211	2	German classification According to TRBA 466
121468	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score
66792	Corynebacterium otitidis DSM 8821 Genome sequencing	complete	2623620536	29321	99.52
67770	Turi_otit_ATCC_51513_V1 assembly for Corynebacterium otitidis ATCC 51513	scaffold	2537561797	883169	60.2
67770	ASM29779v2 assembly for Corynebacterium otitidis ATCC 51513	scaffold	2600255151	883169	27.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	C.otitidis gene for 16S rRNA	X73976	1461		29321

GC content

@ref	GC-content (mol%)	Method
3416	65	thermal denaturation, midpoint method (Tm)
23103	65.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium otitidis DSM 8821 Genome sequencing
IMG: 2623620536

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	66.50	no
125439	motility	BacteriaNetⓘ	no	82.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Turicella otitidis ATCC 51513, isolated from middle ear fluid from a child with otitis media.	Brinkrolf K, Schneider J, Knecht M, Ruckert C, Tauch A	J Bacteriol	10.1128/JB.01412-12	2012
Phylogeny	Turicella otitidis gen. nov., sp. nov., a coryneform bacterium isolated from patients with otitis media.	Funke G, Stubbs S, Altwegg M, Carlotti A, Collins MD	Int J Syst Bacteriol	10.1099/00207713-44-2-270	1994

References

#3416	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8821
#20211	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23103	Guido Funke,Simon Stubbs,Martin Altwegg,Arnaud Carlotti,Matthew D. Collins: Turicella otitidis gen. nov., sp. nov., a Coryneform Bacterium Isolated from Patients with Otitis Media. IJSEM 44: 270 - 273 1994 ( DOI 10.1099/00207713-44-2-270 , PubMed 8186090 )
#36396	; Curators of the CIP;
#50933	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32254
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68379	Automatically annotated from API Coryne .
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121468	Collection of Institut Pasteur ; Curators of the CIP; CIP 104075
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium otitidis (CCUG 32254, DSM 8821, ATCC 51513)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20E

API coryne

API zym

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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