Name: Corynebacterium diphtheriae 48255
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3151

Type strain:

Species: Corynebacterium diphtheriae

Strain Designation: 48255

Culture col. no.: CCUG 33629, DSM 43988, ATCC 11913, JCM 1310, BCRC 10654, IMSNU 12007, KCCM 40413, KCTC 3075

Strain history: K. Suzuki CNF 017 <-- AJ 1414 <-- ATCC 11913 <-- J. M. Coffey 48255.

NCBI tax ID(s): 1206106 (strain), 1717 (species)

SI-ID 35440

ATCC 11913, CCUG 33629, DSM 43988, JCM 1310, CCRC 10654, KCTC 3075, BCRC 10654, CCT 1345

Special Collections

Other strains from Corynebacterium diphtheriae

Section

Corynebacterium diphtheriae 48255 is a Gram-positive bacterium that was isolated from throat culture.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium diphtheriae**
	Full Scientific Name (LPSN)	Corynebacterium diphtheriae (Kruse 1886) Lehmann and Neumann 1896 (Approved Lists 1980)

Synonym

"Bacillus diphtheriae"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.625

[Ref.: #69480]	Motility	no Confidence in %92

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11438]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #11438]

Culture medium growth

[Ref.: #11438]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11438]

Culture medium composition

expand / minimize

[Ref.: #11438]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #11438]

Culture medium growth

[Ref.: #11438]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #11438]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #11438]	4295	+	-	-	-	-	-	+/-	-	-	-	-	-	+	+	-	-	+	-	-	-	+
[Ref.: #51645]	1163	+	-	-	-	-	-	+	-	-	-	-	-	+	+	-	-	+	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11438]	Sample type/isolated from	throat culture

[Ref.: #51645]	Sample type/isolated from	Human throat

[Ref.: #67770]	Sample type/isolated from	Throat culture
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Host Body-Site	#Oral cavity and airways	#Throat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC102487 (>99% sequence identity) for Corynebacterium diphtheriae from Microbeatlas

Aquatic Samples	4794
Soil Samples	3296
Animal Samples	29947
Plant Samples	1078
Total Samples	39115

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11438]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium diphtheriae gene for 16S ribosomal RNA, partial sequence, strain: JCM 1310	LC102487	1380	GenBank ENA	1717 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium diphtheriae DSM 43988	GCA_000455785	contig	GenBank ENA	1206106 tax ID
[Ref.: #66792]	Corynebacterium diphtheriae DSM 43988	1206106.3	wgs	PATRIC	1206106 tax ID	*
[Ref.: #66792]	Corynebacterium diphtheriae DSM 43988	2541047477	draft	JGI IMG/M	1206106 tax ID	*
[Ref.: #66792]	Corynebacterium diphtheriae strain FDAARGOS_1552	1717.766	complete	PATRIC	1717 tax ID	*
[Ref.: #66792]	Corynebacterium diphtheriae strain FDAARGOS_1552	1717.762	complete	PATRIC	1717 tax ID	*

[Ref.: #67770]

GC-content

52.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium diphtheriae DSM 43988 PATRIC: 1206106.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium diphtheriae strain FDAARGOS_1552 PATRIC: 1717.766
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.625	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.776	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	79.293	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	58.28	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92	no

Availability in culture collections External links

[Ref.: #11438]

Culture collection no.

CCUG 33629, DSM 43988, ATCC 11913, JCM 1310, BCRC 10654, IMSNU 12007, KCCM 40413, KCTC 3075

[Ref.: #72667]

SI-ID 35440

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Identification and functional characterization of the NanH extracellular sialidase from Corynebacterium diphtheriae.	Kim S, Oh DB, Kwon O, Kang HA	J Biochem	10.1093/jb/mvp198	2009	*
Metabolism	Corynebacterium diphtheriae: identification and characterization of a channel-forming protein in the cell wall.	Schiffler B, Barth E, Daffe M, Benz R	J Bacteriol	10.1128/JB.00864-07	2007	*

References

#11438

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43988

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#51645 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33629

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72667

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35440.1 )

* These data were automatically processed and therefore are not curated

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Corynebacterium diphtheriae DSM 43988

Corynebacterium diphtheriae strain FDAARGOS_1552

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