Name: Achromobacter xylosoxidans subsp. xylosoxidans DSM 26050
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 300

Type strain:

Species: Achromobacter xylosoxidans subsp. xylosoxidans

Culture col. no.: DSM 26050, CCUG 48584

Strain history: <- CCUG; CCUG 48584 <- C. Wennerås, PHLS, Göteborg, Sweden

NCBI tax ID(s): 85698 (species)

SI-ID 214640

CCUG 48584, DSM 26050

Special Collections

DSMZ
CCUG

Other strains from Achromobacter xylosoxidans subsp. xylosoxidans

Section

Achromobacter xylosoxidans subsp. xylosoxidans DSM 26050 is an aerobe, Gram-negative bacterium that was isolated from human sputum, cystic fibrosis , 29-year-old woman.

Gram-negative
aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	Achromobacter xylosoxidans subsp. xylosoxidans
	Full Scientific Name (LPSN)	Achromobacter xylosoxidans subsp. xylosoxidans (Yabuuchi and Yano 1981 ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

Synonym

Alcaligenes xylosoxidans subsp. xylosoxidans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.828

[Ref.: #18151]	Type of hemolysis	gamma
[Ref.: #18151]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18151]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #18151]

Culture medium growth

[Ref.: #18151]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18151]

Culture medium composition

expand / minimize

[Ref.: #18151]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #18151]

Culture medium growth

[Ref.: #18151]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18151]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18151]			growth	30 °C
[Ref.: #58241]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #58241]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %90.793

[Ref.: #69481]

Ability of spore formation

no Confidence in %97

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #18151]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #18151]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #18151]	23911	+	-	-	-	-	-	-	-	+	+/-	+	+/-	+/-	+/-	+	+	+	+	+	+	not determinedn.d.
[Ref.: #58241]	8190	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #58241]	4207	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18151]	Sample type/isolated from	human sputum, cystic fibrosis , 29-year-old woman
[Ref.: #18151]	Geographic location (country and/or sea, region)	Göteborg
[Ref.: #18151]	Country	Sweden
[Ref.: #18151]	Country ISO 3 Code	SWE
[Ref.: #18151]	Continent	Europe

[Ref.: #58241]	Sample type/isolated from	Human sputum,cystic fibrosis,29-yr-old woman
[Ref.: #58241]	Sampling date	2003-12-01
[Ref.: #58241]	Geographic location (country and/or sea, region)	Göteborg
[Ref.: #58241]	Country	Sweden
[Ref.: #58241]	Country ISO 3 Code	SWE
[Ref.: #58241]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	#Cystic fibrosis
#Host	#Human	#Female
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18151]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter xylosoxidans strain FDAARGOS_984	85698.299	complete	PATRIC	85698 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Achromobacter xylosoxidans strain FDAARGOS_984 strain Not applicable PATRIC: 85698.299
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	97	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Achromobacter xylosoxidans strain FDAARGOS_984 strain Not applicable PATRIC: 85698.299
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.828	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.857	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.793	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.165	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.997	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.652	no

Availability in culture collections External links

[Ref.: #18151]

Culture collection no.

DSM 26050, CCUG 48584

[Ref.: #69982]

SI-ID 214640

References

#18151

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26050

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#58241 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48584

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69982

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID214640.1 )

* These data were automatically processed and therefore are not curated

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Achromobacter xylosoxidans strain FDAARGOS_984 strain Not applicable

Achromobacter xylosoxidans strain FDAARGOS_984 strain Not applicable

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