Strain identifier

BacDive ID: 300

Type strain: No

Species: Achromobacter xylosoxidans subsp. xylosoxidans

Strain history: <- CCUG; CCUG 48584 <- C. Wennerås, PHLS, Göteborg, Sweden

NCBI tax ID(s): 85698 (species)

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General

@ref: 18151

BacDive-ID: 300

DSM-Number: 26050

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Achromobacter xylosoxidans subsp. xylosoxidans DSM 26050 is an aerobe, mesophilic, motile bacterium that was isolated from human sputum, cystic fibrosis , 29-year-old woman.

NCBI tax id

  • NCBI tax id: 85698
  • Matching level: species

strain history

  • @ref: 18151
  • history: <- CCUG; CCUG 48584 <- C. Wennerås, PHLS, Göteborg, Sweden

doi: 10.13145/bacdive300.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter xylosoxidans subsp. xylosoxidans
  • full scientific name: Achromobacter xylosoxidans subsp. xylosoxidans (Yabuuchi and Yano 1981 ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

  • synonyms

    • @ref: 20215
    • synonym: Alcaligenes xylosoxidans subsp. xylosoxidans

@ref: 18151

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter xylosoxidans subsp. xylosoxidans

full scientific name: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes96.152
6948099.997negative

colony morphology

  • @ref: 18151
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18151NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
18151CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18151positivegrowth30mesophilic
58241positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58241
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no97
69480no99.878

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
18151catalase+1.11.1.6
18151cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
58241-++--+----+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
18151+-------++/-++/-+/-+/-++++++
58241+-------+-----+++++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
18151human sputum, cystic fibrosis , 29-year-old womanGöteborgSwedenSWEEurope
58241Human sputum,cystic fibrosis,29-yr-old womanGöteborgSwedenSWEEurope2003-12-01

isolation source categories

Cat1Cat2Cat3
#Infection#Disease#Cystic fibrosis
#Host#Human#Female
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

  • @ref: 18151
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Achromobacter xylosoxidans strain FDAARGOS_984
  • accession: 85698.299
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 85698

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno97no
motileyes85.772no
flagellatedno73.296no
gram-positiveno98.427no
anaerobicno98.359yes
halophileno90.599no
spore-formingno93.642no
thermophileno99.627yes
glucose-utilyes65.533yes
aerobicyes87.223yes
glucose-fermentno92.231yes

External links

@ref: 18151

culture collection no.: DSM 26050, CCUG 48584

straininfo link

  • @ref: 69982
  • straininfo: 214640

Reference

@idauthorscataloguedoi/urltitle
18151Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26050)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26050
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
58241Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48584)https://www.ccug.se/strain?id=48584
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69982Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID214640.1StrainInfo: A central database for resolving microbial strain identifiers