Achromobacter xylosoxidans subsp. xylosoxidans (DSM 26051, CCUG 48684)

Name: Achromobacter xylosoxidans subsp. xylosoxidans (DSM 26051, CCUG 48684)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 301

Type strain

Culture col. no. DSM 26051 CCUG 48684

NCBI tax ID(s) 85698

Special Collections DSMZ CCUG

History <- CCUG; CCUG 48684 <- L. Lind, PHLS, Göteborg, Sweden

Links

Achromobacter xylosoxidans subsp. xylosoxidans DSM 26051 is a bacterium that was isolated from human sputum,30-year-old woman, cystic fibrosis.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 214752

CCUG 48684,DSM 26051

@ref 20215

Last LPSN update 2026-02-09 11:17:50

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter xylosoxidans subsp. xylosoxidans

Full scientific name Achromobacter xylosoxidans subsp. xylosoxidans (Yabuuchi and Yano 1981 ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

Synonyms (1)

Alcaligenes xylosoxidans subsp. xylosoxidans

BacDive ID	Other strains from Achromobacter xylosoxidans subsp. xylosoxidans (8)	Type strain
297	A. xylosoxidans subsp. xylosoxidans KM543, DSM 2402, ATCC 27061, DSM 10346, NRRL ... (type strain)
300	A. xylosoxidans subsp. xylosoxidans DSM 26050, CCUG 48584
302	A. xylosoxidans subsp. xylosoxidans R-9501, DSM 26088, CCUG 42363
304	A. xylosoxidans subsp. xylosoxidans DSM 26073, CCUG 48386
305	A. xylosoxidans subsp. xylosoxidans DSM 26089, CCUG 45179
306	A. xylosoxidans subsp. xylosoxidans DSM 26101, CCUG 41513
307	A. xylosoxidans subsp. xylosoxidans DSM 26102, CCUG 56600
308	A. xylosoxidans subsp. xylosoxidans DSM 26161, CCUG 48331

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.828

Colony morphology

@ref	Type of hemolysis	Incubation period
18152	gamma	1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18152	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
18152	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18152	positive	growth	30
58291	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.793

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
18152	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
18152	cytochrome-c oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
58291	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
58291	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	+	+
18152	+	-	-	-	-	-	-	-	+	-	+	-	-	+/-	+	+	+	+	+	+	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	#Cystic fibrosis
#Host	#Human	#Female
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
18152	human sputum,30-year-old woman, cystic fibrosis		Göteborg	Sweden	SWE	Europe
58291	Human sputum,30-yr-old woman,cystic fibrosis	2004-01-19	Göteborg	Sweden	SWE	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18152	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1672882v1 assembly for Achromobacter xylosoxidans FDAARGOS_1091	complete	GCA_016728825	85698.301	8120369991	85698	95.45

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter xylosoxidans strain FDAARGOS_1091 strain Not applicable
PATRIC: 85698.301

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	no
125438	anaerobic	anaerobicⓘ	no	97.86	no
125438	aerobic	aerobicⓘ	yes	90.79	no
125438	spore-forming	spore-formingⓘ	no	87.17	no
125438	thermophilic	thermophileⓘ	no	99.00	no
125438	flagellated	motile2+ⓘ	yes	82.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Isolation and characterization of numerous novel phages targeting diverse strains of the ubiquitous and opportunistic pathogen Achromobacter xylosoxidans.	Wittmann J, Dreiseikelmann B, Rohde C, Rohde M, Sikorski J.	PLoS One	10.1371/journal.pone.0086935	2014

References

#18152	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26051
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#58291	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48684
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter xylosoxidans subsp. xylosoxidans (DSM 26051, CCUG 48684)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016728825

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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